Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: Solution
An amazing form solution
Papers that mentioned: 31
pypi: treemap
Treemap creator with interactive viewer - now with display of .coverage files
Papers that mentioned: 31
pypi: colorspace
A small collection of hex-colors.
Papers that mentioned: 31
pypi: Vertex
Divmod Vertex is the first implementation of the Q2Q protocol, which is a peer-to-peer communication protocol for establishing stream-based communication between named endpoints.
Papers that mentioned: 31
pypi: meme
Use the command line to generate memes on memegenerator.co
Papers that mentioned: 31
pypi: Pattern
Web mining module for Python.
Papers that mentioned: 31
pypi: CREDO
Package for benchmarking, profiling and analysis scientific modelling codes
Papers that mentioned: 31
pypi: mpi4py
Python bindings for MPI
Papers that mentioned: 31
pypi: mi
description
Papers that mentioned: 30
pypi: Babel
Internationalization utilities
Papers that mentioned: 30
pypi: alignment
Native Python library for generic sequence alignment.
Papers that mentioned: 30
pypi: auto
auto package
Papers that mentioned: 30
pypi: mass
Merge and Simplify Scripts: an automated tool for managing, combining and minifying javascript assets for web projects.
Papers that mentioned: 30
pypi: psy
psychometrics package, including structural equation model, confirmatory factor analysis, unidimensional item response theory, multidimensional item response theory, cognitive diagnosis model, factor analysis and adaptive testing.
Papers that mentioned: 30
pypi: OpenAlea
Component framework and visual programming environment
Papers that mentioned: 30
pypi: Plugins
Easily add hooks and plugins to your applications
Papers that mentioned: 30
pypi: process
Running processes in python.
Papers that mentioned: 30
pypi: edition
Creates beautiful HTML and Markdown editions of your documentation
Papers that mentioned: 30
pypi: PIL
Python Imaging Library
Papers that mentioned: 30
pypi: split
Functions to split or partition sequences.
Papers that mentioned: 30
pypi: jmp
JMP is a Mixed Precision library for JAX.
Papers that mentioned: 30
pypi: Robin
Robin is a project for fast and easy binding of python and C++ programs.
Papers that mentioned: 30
pypi: graphite
Papers that mentioned: 30
pypi: earth
All of it
Papers that mentioned: 30
pypi: mat
Manage your database versions with pure SQL
Papers that mentioned: 30
pypi: ipynb
Package / Module importer for importing code from Jupyter Notebook files (.ipynb)
Papers that mentioned: 30
pypi: GTC
The GUM Tree Calculator for Python
Papers that mentioned: 30
pypi: Profiles
Papers that mentioned: 30
pypi: ncbi
Python wrapper for the NCBI C++ Toolkit
Papers that mentioned: 30
pypi: Eureqa
Nutonian Eureqa API
Papers that mentioned: 29
pypi: packages

Papers that mentioned: 29
pypi: pyCRAC
Python NextGen sequencing data processing software
Papers that mentioned: 29
pypi: GPy
The Gaussian Process Toolbox
Papers that mentioned: 29
pypi: spaTyper
Typing of Staphylococcus aureus protein A from assemblies
Papers that mentioned: 29
pypi: Relief
datastructure validation
Papers that mentioned: 29
pypi: loo
LooMan Cli
Papers that mentioned: 29
pypi: mgm
Papers that mentioned: 29
pypi: rdp
Pure Python implementation of the Ramer-Douglas-Peucker algorithm
Papers that mentioned: 29
pypi: LHAPDF

Papers that mentioned: 29
pypi: skewer
Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29
pypi: iRep
calcualte iRep replication rates from metagenome sequencing
Papers that mentioned: 29
pypi: epi
Papers that mentioned: 29
pypi: Splice
Splice is a git-based wiki system
Papers that mentioned: 29
pypi: akima
Akima Interpolation
Papers that mentioned: 29
pypi: Inca
Python Distribution Utilities
Papers that mentioned: 29
pypi: pangolin
Papers that mentioned: 29
pypi: gap
Google App Engine project bootstrap
Papers that mentioned: 29
pypi: lars
A framework for converting web-logs into various formats
Papers that mentioned: 29
pypi: CPS
Advanced and full featured Open Source ECM framework
Papers that mentioned: 29
pypi: Zephyr
Python bindings for Zephyr, including a GUI client
Papers that mentioned: 28
pypi: stargazer
Nicely formatted regression reporting
Papers that mentioned: 28
pypi: CABS
CABS in python
Papers that mentioned: 28
pypi: Oz
A batteries-included web framework built on Tornado
Papers that mentioned: 28
pypi: Picasso
A simple web framework for Python.
Papers that mentioned: 28
pypi: sam
Time series anomaly detection and forecasting
Papers that mentioned: 28
pypi: c
Android battery history analyZer
Papers that mentioned: 28
pypi: mash
Python lib for converting dict to objects recursive
Papers that mentioned: 28
pypi: XY
XY manages document and spreadsheet formats as text.
Papers that mentioned: 28
pypi: micromanager
Policy enforcement tool for GCP
Papers that mentioned: 28
pypi: SALib
Tools for global sensitivity analysis. Contains Sobol', Morris, FAST, DGSM, PAWN, HDMR, Moment Independent and fractional factorial methods
Papers that mentioned: 28
pypi: ete3
A Python Environment for (phylogenetic) Tree Exploration
Papers that mentioned: 28
pypi: Imagery
A package which aims at providing the basic intial steps required to image related operations.
Papers that mentioned: 28
pypi: reader
A Python feed reader library.
Papers that mentioned: 28
pypi: Voice
A voting app for letting users request features.
Papers that mentioned: 28
pypi: mem
memorize tool
Papers that mentioned: 28
pypi: gsea
Papers that mentioned: 28
pypi: caller
Set a Python property using a function call
Papers that mentioned: 27
pypi: ISE
Python wrapper for Cisco ISE ERS API
Papers that mentioned: 27
pypi: core

Papers that mentioned: 27
pypi: flex
Swagger Schema validation.
Papers that mentioned: 27
pypi: emma
Emma -- Productivity analysis tool.
Papers that mentioned: 27
pypi: rdkit
A collection of chemoinformatics and machine-learning software written in C++ and Python
Papers that mentioned: 27
pypi: q2
A reinforcement learning framework and command line tool
Papers that mentioned: 27
pypi: FERG
Une bibliotheque pour Gerer - analyse les energies d'un maison individuelle
Papers that mentioned: 27
pypi: unix
Manage Unix-like systems.
Papers that mentioned: 27
pypi: intersect
Intersection Of two curves
Papers that mentioned: 27
pypi: Pack
Pack Reference Implementation
Papers that mentioned: 27
pypi: MN
Application software.
Papers that mentioned: 27
pypi: efmtool
Python wrapper for efmtool
Papers that mentioned: 27
pypi: Brian2
A clock-driven simulator for spiking neural networks
Papers that mentioned: 27
pypi: Fuzzy
Fast Python phonetic algorithms
Papers that mentioned: 27
pypi: jpeg
read/write jpeg COM, EXIF, IPTC medata
Papers that mentioned: 27
pypi: PyQt4
Python bindings for the Qt cross platform GUI toolkit
Papers that mentioned: 27
pypi: RG
Ryan's go-to Python functions
Papers that mentioned: 27
pypi: BitTorrent
UNKNOWN
Papers that mentioned: 26
pypi: BioGraph
Molecular graphs and the neural networks to embed them.
Papers that mentioned: 26
pypi: Fold
A binary encoding scheme (optionally keyed)
Papers that mentioned: 26
pypi: skimage
Dummy package that points to scikit-image
Papers that mentioned: 26
pypi: visualization
Visualization toolkit for the Berkeley AutoLab.
Papers that mentioned: 26
pypi: alt
Web API level tests and test runner
Papers that mentioned: 26
pypi: tidytext
Text processing with pandas DataFrames.
Papers that mentioned: 26
pypi: homer
Configuration manager for network devices
Papers that mentioned: 26
pypi: shapes
Tools for analyzing geometric morphometic shape
Papers that mentioned: 26
pypi: AHRS
Attitude and Heading Reference Systems.
Papers that mentioned: 26
pypi: CLAM
Turns command-line tools into fully-fledged RESTful webservices with an auto-generated web-interface for human end-users.
Papers that mentioned: 26
pypi: Chorus
Simple chemical structure modeling toolkit
Papers that mentioned: 26
pypi: CDF
This package handles files in NASA Common Data Format
Papers that mentioned: 26
pypi: seq2seq
Real valued sequence to sequence autoencoder
Papers that mentioned: 26
pypi: FishTaco
FishTaco: a metagenomic computational framework, aiming to identify the taxa that are driving functional shifts in microbiomes.
Papers that mentioned: 26
pypi: tsne
TSNE algorithms
Papers that mentioned: 26