pypi: rdp | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giz146

Systematic processing of ribosomal RNA gene amplicon sequencing data
Cited by: 45
Author(s): Julien Tremblay, Étienne Yergeau
Software Mentions: 10
Published: almost 5 years ago

Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority
Cited by: 47
Author(s): John K. Pearman, Matthieu Leray, Rodrigo Villalobos, Ryuji J. Machida, Michael L. Berumen, Nancy Knowlton, Susana Carvalho
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0250783

Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
Cited by: 12
Author(s): John K. Pearman, Georgia Thomson‐Laing, Jamie Howarth, Marcus J. Vandergoes, L. M. Thompson, Andrew Rees, Susanna A. Wood
Software Mentions: 7
Published: over 3 years ago

10.3389/fmicb.2020.01860

Seasonal and Spatial Variations in Bacterial Communities From Tetrodotoxin-Bearing and Non-tetrodotoxin-Bearing Clams
Cited by: 7
Author(s): Laura Biessy, John K. Pearman, Kirsty F. Smith, Ian Hawes, Susanna A. Wood
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.4283

A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas
Cited by: 47
Author(s): Abigail Cahill, John K. Pearman, Ángel Borja, Laura Carugati, Susana Carvalho, Roberto Danovaro, Sarah Dashfield, Romain David, Jean‐Pierre Féral, Sergej Olenin, Andrius Šiaulys, Paul J. Somerfield, Antoaneta Trayanova, María C. Uyarra, Anne Chenuil
Software Mentions: 6
Published: over 6 years ago

10.1099/vir.0.053686-0

Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types
Cited by: 166
Author(s): Chloe McIntyre, Nick J. Knowles, Peter Simmonds
Software Mentions: 6
Published: over 11 years ago

10.1111/1751-7915.12757

Relative abundance of ‘ <i>Candidatus</i> Tenderia electrophaga’ is linked to cathodic current in an aerobic biocathode community
Cited by: 25
Author(s): Anthony P. Malanoski, Baochuan Lin, Brian J. Eddie, Zheng Wang, W. Judson Hervey, Sarah M. Glaven
Software Mentions: 5
Published: over 7 years ago

10.1111/1751-7915.12337

Dynamic changes in microbiota and mycobiota during spontaneous ‘<scp>V</scp>ino <scp>S</scp>anto <scp>T</scp>rentino’ fermentation
Cited by: 41
Author(s): Irene Stefanini, Davide Albanese, A. Cavazza, Elena Franciosi, Carlotta De Filippo, Claudio Donati, Duccio Cavalieri
Software Mentions: 4
Published: almost 9 years ago

10.1111/1751-7915.12308

Functionally redundant but dissimilar microbial communities within biogas reactors treating maize silage in co‐fermentation with sugar beet silage
Cited by: 29
Author(s): Susanne Langer, Sharif Ahmed, Daniel Einfalt, Frank R. Bengelsdorf, Marian Kazda
Software Mentions: 4
Published: over 9 years ago

10.1111/ppa.13001

Analyses of seven new whole genome sequences of cassava brown streak viruses in Mozambique reveals two distinct clades: evidence for new species
Cited by: 8
Author(s): J. J. G. Amisse, Joseph Ndunguru, Fred Tairo, Elijah Ateka, Laura M. Boykin, Monica A. Kehoe, Nurbibi Cossa, Chrissie Rey, Peter Sseruwagi
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-015-0105-6

Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
Cited by: 72
Author(s): Oscar Franzén, Jianzhong Hu, Xiulong Bao, Steven H. Itzkowitz, Inga Peter, Ali Kashif Bashir
Software Mentions: 3
Published: about 9 years ago

10.1111/1574-6941.12142

Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic)
Cited by: 14
Author(s): Itziar Lekunberri, Eva Sintes, Daniele De Corte, Taichi Yokokawa, Gerhard J. Herndl
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0037068

The Impact of Human Conflict on the Genetics of Mastomys natalensis and Lassa Virus in West Africa
Cited by: 37
Author(s): Aude Lalis, Raphaël Leblois, Émilie Lecompte, Christiane Denys, Jan ter Meulen, Thierry Wirth
Software Mentions: 3
Published: over 12 years ago

10.1099/jgv.0.000338

First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses
Cited by: 31
Author(s): Paul A. Brown, Fabrice Touzain, François-Xavier Briand, A. M. Gouilh, Céline Courtillon, Chantal Allée, Evelyne Lemaitre, Claire de Boisséson, Yannick Blanchard, Nicolas Eterradossi
Software Mentions: 3
Published: almost 9 years ago

10.1128/mBio.01833-19

<i>Lotus japonicus</i> Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities
Cited by: 35
Author(s): Thorsten Thiergart, Rafal Zgadzaj, Zoltán Bozsóki, Ruben Garrido‐Oter, Simona Radutoiu, Paul Schulze‐Lefert
Software Mentions: 3
Published: about 5 years ago

10.1099/vir.0.2008/003590-0

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen
Cited by: 132
Author(s): Arvind Varsani, Dionne N. Shepherd, Adérito Luis Monjane, Betty E. Owor, Julia B. Erdmann, Edward P. Rybicki, Michel Peterschmitt, R. W. Briddon, P. G. Markham, Sunday Oluwafemi, Oliver P. Windram, Pierre Lefeuvre, Jean‐Michel Lett, Darren P. Martin
Software Mentions: 2
Published: about 16 years ago

10.3389/fmicb.2018.00851

Rearing Water Treatment Induces Microbial Selection Influencing the Microbiota and Pathogen Associated Transcripts of Cod (Gadus morhua) Larvae
Cited by: 28
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Per Winge, Keshuai Li, Yngvar Ôlsen, Atle M. Bones, Ôlav Vadstein, Ingrid Bakke
Software Mentions: 2
Published: over 6 years ago

10.1099/jmm.0.050658-0

Structure of rrn operons in pathogenic non-cultivable treponemes: sequence but not genomic position of intergenic spacers correlates with classification of Treponema pallidum and Treponema paraluiscuniculi strains
Cited by: 29
Author(s): Darina Čejková, Marie Zobaníková, Petra Pospíšilová, Michal Strouhal, Lenka Mikalová, George M. Weinstock, David Šmajs
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0194665

Plant growth-promoting rhizobacteria associated with avocado display antagonistic activity against Phytophthora cinnamomi through volatile emissions
Cited by: 66
Author(s): Alfonso Méndez-Bravo, Elvis Marian Cortazar-Murillo, Edgar Guevara-Avendaño, Oscar Ceballos-Luna, Benjamín Rodríguez-Haas, Ana L. Kiel-Martínez, Orlando Hernández-Cristóbal, José A. Guerrero‐Analco, Frédérique Reverchon
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/5378961

The Potential Effect of Chinese Herbal Formula Hongqijiangzhi Fang in Improving NAFLD: Focusing on NLRP3 Inflammasome and Gut Microbiota
Cited by: 9
Author(s): Liang Shen, Yupei Zhang, Yuxuan Deng, Yong He, Yubin Liang, Zien Liang, Yanning Chen, Kairui Tang, Runsen Chen, Qin Yang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.01934

Genomic GC-Content Affects the Accuracy of 16S rRNA Gene Sequencing Based Microbial Profiling due to PCR Bias
Cited by: 62
Author(s): Martin Frederik Laursen, Marlene Danner Dalgaard, Martin Iain Bahl
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2021.633075

Host Phylogeny and Diet Shape Gut Microbial Communities Within Bamboo-Feeding Insects
Cited by: 17
Author(s): Kuanguan Huang, Jie Wang, Junhao Huang, Shouke Zhang, Alfried P. Vogler, Quanquan Liu, Yongchun Li, Ming Yang, You Li, Xuguo Zhou
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2017.00095

Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation
Cited by: 114
Author(s): Clarissa Schwab, Hans‐Joachim Ruscheweyh, Věra Bunešová, Van T. Pham, Niko Beerenwinkel, Christophe Lacroix
Software Mentions: 1
Published: almost 8 years ago

10.1093/gbe/evu207

Signs of Neutralization in a Redundant Gene Involved in Homologous Recombination in Wolbachia Endosymbionts
Cited by: 10
Author(s): Myriam Badawi, Isabelle Giraud, Fabrice Vavre, Pierre Grève, Richard Cordaux
Software Mentions: 1
Published: about 10 years ago

10.1128/mSphere.00387-20

Identification of Simplified Microbial Communities That Inhibit Clostridioides difficile Infection through Dilution/Extinction
Cited by: 15
Author(s): Jennifer M. Auchtung, Eva C. Preisner, James W. Collins, Armando I. Lerma, Robert A. Britton
Software Mentions: 1
Published: about 4 years ago

10.1099/vir.0.83122-0

Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient
Cited by: 48
Author(s): John Aaskov, Katie Buzacott, Emma Field, Kym Lowry, Alain Berlioz-Arthaud, Edward C. Holmes
Software Mentions: 1
Published: almost 17 years ago

10.1099/vir.0.027110-0

Genetic characterization of Japanese encephalitis virus genotype II strains isolated from 1951 to 1978
Cited by: 17
Author(s): Amy J. Schuh, Robert B. Tesh, Alan D.T. Barrett
Software Mentions: 1
Published: almost 14 years ago

10.1099/vir.0.047506-0

Eight novel hepatitis C virus genomes reveal the changing taxonomic structure of genotype 6
Cited by: 17
Author(s): Hongren Wang, Zenan Yuan, Eleanor Barnes, Manqiong Yuan, Chunhua Li, Yongshui Fu, Xueshan Xia, Gang Li, Paul N. Newton, Manivanh Vongsouvath, Paul Klenerman, Oliver G. Pybus, Donald G. Murphy, Kenji Abe, Ling Lü
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-11-430

A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes
Cited by: 15
Author(s): Kerstin Röske, Mark F. Foecking, Shibu Yooseph, John I. Glass, Michael J. Calcutt, Kim S. Wise
Software Mentions: 1
Published: almost 15 years ago

Ecosyste.ms: Papers

Projects: pypi: rdp

Papers Mentioning rdp 29