Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
pypi projects 9,932
pypi: Facebook
Papers that mentioned: 3,274pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: scikit-learn
A set of python modules for machine learning and data miningPapers that mentioned: 2,431
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.Papers that mentioned: 2,125
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascriptPapers that mentioned: 1,819
pypi: car
Papers that mentioned: 1,651pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
pypi: STAMP
A graphical software package for analyzing taxonomic and functional profiles.Papers that mentioned: 1,190
pypi: of
The Optimal Framework is the fastest path to building any modern multi-user systemPapers that mentioned: 1,025
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)Papers that mentioned: 989
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSDPapers that mentioned: 918
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.Papers that mentioned: 893
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.Papers that mentioned: 848
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.Papers that mentioned: 827
pypi: NEURON
Empirically-based simulator for modeling neurons and networks of neuronsPapers that mentioned: 766
pypi: engine
Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.Papers that mentioned: 732
pypi: PsychoPy
PsychoPy provides easy, precise, flexible experiments in behavioural sciencesPapers that mentioned: 691
pypi: pandas
Powerful data structures for data analysis, time series, and statisticsPapers that mentioned: 640
pypi: Analyze
Analyze is a python library that provides comprehensive statistical analysis of a dataframe in 5 lines of code. It creates significant insight for data scientists, analysts and machine learning engineers, enabling quick understanding of a dataset.Papers that mentioned: 615
pypi: environment
This library provides parsing and validation of environment variables.Papers that mentioned: 569
pypi: Manager
Manager is the Components Manager package of Umbra, sIBL_GUI and sIBL_Reporter.Papers that mentioned: 524
pypi: 2
Papers that mentioned: 499pypi: and
A package to prevent Dependency Confusion attacks against Yandex.Papers that mentioned: 418
pypi: py
library with cross-python path, ini-parsing, io, code, log facilitiesPapers that mentioned: 403
pypi: system
Papers that mentioned: 393pypi: GeoDa
Papers that mentioned: 389pypi: Explorer
A module to control the Explorer HAT Raspberry Pi Addon BoardPapers that mentioned: 379
pypi: Archive
Simple library that provides a common interface for extracting zip and tar archives.Papers that mentioned: 363
pypi: pwr
This program helps you write html pages like documents in word processorsPapers that mentioned: 312
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.Papers that mentioned: 307
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306