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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

pypi projects 9,932

pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)
pypi: PyMOL
Papers that mentioned: 8,266
Very Likely Science (90)
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
Very Likely Science (90)
pypi: Facebook
Papers that mentioned: 3,274
Unlikely Science (0)
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
Very Likely Science (90)
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
Very Likely Science (65)
pypi: excel
This package name is reserved by Microsoft Corporation
Papers that mentioned: 2,995
Unlikely Science (5)
pypi: Zen
A simple way to access the ZenDesk v2 API via Python.
Papers that mentioned: 2,767
Very Likely Science (65)
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
Very Likely Science (100)
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
Very Likely Science (100)
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
Very Likely Science (65)
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
Very Likely Science (90)
pypi: Scaffold
Simple project scaffolding for Python
Papers that mentioned: 1,866
Very Likely Science (65)
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
Very Likely Science (65)
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690
Very Likely Science (90)
pypi: car
Papers that mentioned: 1,651
Unlikely Science (0)
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
Very Likely Science (100)
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
Very Likely Science (90)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
Very Likely Science (100)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: CellProfiler
An open-source application for biological image analysis
Papers that mentioned: 1,504
Very Likely Science (100)
pypi: custom
Custom self carry
Papers that mentioned: 1,363
Very Likely Science (65)
pypi: package
package is a package to package your package
Papers that mentioned: 1,300
Very Likely Science (65)
pypi: 0
0
Papers that mentioned: 1,265
Very Likely Science (65)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: for
Papers that mentioned: 1,226
Very Likely Science (65)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: STAMP
A graphical software package for analyzing taxonomic and functional profiles.
Papers that mentioned: 1,190
Very Likely Science (65)
pypi: QuantStudio
Quant Studio
Papers that mentioned: 1,164
Very Likely Science (65)
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
Very Likely Science (100)
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
Very Likely Science (100)
pypi: of
The Optimal Framework is the fastest path to building any modern multi-user system
Papers that mentioned: 1,025
Very Likely Science (65)
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
Very Likely Science (65)
pypi: house
A lib to persist blobs by their sha256
Papers that mentioned: 960
Very Likely Science (65)
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
Very Likely Science (65)
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
Very Likely Science (100)
pypi: PICOS
A Python interface to conic optimization solvers.
Papers that mentioned: 859
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
Very Likely Science (100)
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
Papers that mentioned: 827
Very Likely Science (75)
pypi: ggplot
ggplot for python
Papers that mentioned: 796
Very Likely Science (100)
pypi: NEURON
Empirically-based simulator for modeling neurons and networks of neurons
Papers that mentioned: 766
Very Likely Science (100)
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
Very Likely Science (100)
pypi: engine
Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.
Papers that mentioned: 732
Very Likely Science (65)
pypi: HyPhy
HyPhy package interface library
Papers that mentioned: 722
Very Likely Science (100)
pypi: meta
Byte-code and ast programming tools
Papers that mentioned: 706
Very Likely Science (80)
pypi: PsychoPy
PsychoPy provides easy, precise, flexible experiments in behavioural sciences
Papers that mentioned: 691
Very Likely Science (90)
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
Very Likely Science (75)
pypi: matlab
Matlab for python
Papers that mentioned: 666
Very Likely Science (65)
pypi: FAST
FAST: Framework for Agile Software Testing
Papers that mentioned: 651
Very Likely Science (80)
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
Very Likely Science (100)
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
Very Likely Science (65)
pypi: Analyze
Analyze is a python library that provides comprehensive statistical analysis of a dataframe in 5 lines of code. It creates significant insight for data scientists, analysts and machine learning engineers, enabling quick understanding of a dataset.
Papers that mentioned: 615
Very Likely Science (90)
pypi: perl
Perl as a Python package
Papers that mentioned: 604
Very Likely Science (65)
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
Very Likely Science (80)
pypi: script
Help for writing shell scripts in Python
Papers that mentioned: 575
Very Likely Science (65)
pypi: environment
This library provides parsing and validation of environment variables.
Papers that mentioned: 569
Very Likely Science (65)
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559
Very Likely Science (65)
pypi: Manager
Manager is the Components Manager package of Umbra, sIBL_GUI and sIBL_Reporter.
Papers that mentioned: 524
Very Likely Science (65)
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
Very Likely Science (65)
pypi: 2
Papers that mentioned: 499
Unlikely Science (0)
pypi: DataAnalysis
Pacote de pré-processamento de texto
Papers that mentioned: 493
Very Likely Science (65)
pypi: Library
Useful library package stuff.
Papers that mentioned: 489
Very Likely Science (65)
pypi: Calculator
Performs basic calculation operations
Papers that mentioned: 478
Very Likely Science (65)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)
pypi: imagej
Python wrapper for ImageJ
Papers that mentioned: 467
Very Likely Science (100)
pypi: mice
Multi-iteration Stochastic Estimator
Papers that mentioned: 455
Very Likely Science (80)
pypi: linux
Papers that mentioned: 450
Very Likely Science (65)
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
Likely Science (40)
pypi: T
H
Papers that mentioned: 437
Very Likely Science (65)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: language
Basic tools for working with natural language text data
Papers that mentioned: 427
Very Likely Science (65)
pypi: and
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 418
Very Likely Science (65)
pypi: M
M
Papers that mentioned: 418
Very Likely Science (65)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
Very Likely Science (100)
pypi: word2vec
Wrapper for Google word2vec
Papers that mentioned: 413
Very Likely Science (85)
pypi: BD
Bangladesh Details with postal code
Papers that mentioned: 404
Very Likely Science (65)
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
Very Likely Science (65)
pypi: plink
A full featured Tk-based knot and link editor
Papers that mentioned: 399
Very Likely Science (100)
pypi: system
Papers that mentioned: 393
Unlikely Science (0)
pypi: GeoDa
Papers that mentioned: 389
Unlikely Science (0)
pypi: Explorer
A module to control the Explorer HAT Raspberry Pi Addon Board
Papers that mentioned: 379
Very Likely Science (65)
pypi: Ion
Ion is an MVC Web Framework
Papers that mentioned: 368
Very Likely Science (65)
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
Very Likely Science (80)
pypi: Archive
Simple library that provides a common interface for extracting zip and tar archives.
Papers that mentioned: 363
Very Likely Science (65)
pypi: scripts
Various shell scripts
Papers that mentioned: 315
Very Likely Science (65)
pypi: pwr
This program helps you write html pages like documents in word processors
Papers that mentioned: 312
Very Likely Science (65)
pypi: Biology
Biological Analysis
Papers that mentioned: 311
Very Likely Science (90)
pypi: ms
ms
Papers that mentioned: 308
Very Likely Science (65)
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)
pypi: prism
PRISM: An alternative to MCMC for rapid analysis of models
Papers that mentioned: 301
Very Likely Science (100)
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
Very Likely Science (80)
pypi: PyRx
Rx schema and validation system
Papers that mentioned: 297
Very Likely Science (65)
pypi: TSA
Papers that mentioned: 293
Very Likely Science (65)
pypi: tool
A compact modular conf/web/console framework.
Papers that mentioned: 293
Very Likely Science (65)
pypi: Interface
Interface implementation
Papers that mentioned: 291
Very Likely Science (65)
pypi: drc
Django comment module using in reactJS
Papers that mentioned: 291
Very Likely Science (65)
pypi: suite
A better dictionary.
Papers that mentioned: 286
Very Likely Science (65)