Ecosyste.ms: Papers

10.1099/mgen.0.000524

BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access
Cited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pbio.3001319

A flexible framework for multi-particle refinement in cryo-electron tomography
Cited by: 29
Author(s): Alister Burt, Lorenzo Gaifas, Tom Dendooven, Irina Gutsche
Software Mentions: 10
Published: over 2 years ago

10.3389/fpsyg.2019.00458

Body Odor Disgust Sensitivity Predicts Moral Harshness Toward Moral Violations of Purity
Cited by: 13
Author(s): Marco Tullio Liuzza, Jonas Olofsson, Sebastian Cancino-Montecinos, Torun Lindholm
Software Mentions: 8
Published: about 5 years ago

10.1007/s00018-018-2898-5

Celiac disease biomarkers identified by transcriptome analysis of small intestinal biopsies
Cited by: 32
Author(s): Hanna Bragde, Ulf Jansson, Mats Fredrikson, Ewa Grodzinsky, Jan Söderman
Software Mentions: 8
Published: almost 6 years ago

10.3389/fninf.2016.00027

CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave
Cited by: 386
Author(s): Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby
Software Mentions: 7
Published: almost 8 years ago

10.1002/humu.23772

eDiVA—Classification and prioritization of pathogenic variants for clinical diagnostics
Cited by: 15
Author(s): Mattia Bosio, Oliver Drechsel, Rubayte Rahman, Francesc Muyas, Raquel Rabionet, Daniela Bezdan, Laura Domènech, Hyun‐Gyu Hor, Jean‐Jacques Schott, Francina Munell, Roger Colobran, Alfons Macaya, Xavier Estivill, Stephan Ossowski
Software Mentions: 7
Published: almost 5 years ago

10.1186/1471-2105-15-69

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data
Cited by: 15
Author(s): Gan Zhang, Jianwu Wang, Nathan Salomonis, Jennifer Stowe, Gabriel G. Haddad, Andrew D. McCulloch, Ilkay Altıntaş, Alexander C. Zambon
Software Mentions: 7
Published: about 10 years ago

10.1038/sdata.2017.35

A geographically-diverse collection of 418 human gut microbiome pathway genome databases
Cited by: 6
Author(s): Aria S. Hahn, Tomer Altman, Kishori M. Konwar, Niels W. Hanson, Dongjae Kim, David A. Relman, David L. Dill, Steven J. Hallam
Software Mentions: 6
Published: about 7 years ago

10.1007/s11306-016-1030-9

Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling
Cited by: 211
Author(s): Riccardo Di Guida, Jasper Engel, J. William Allwood, Ralf J. M. Weber, Steven J.M. Jones, Ulf Sommer, Mark R. Viant, Warwick B. Dunn
Software Mentions: 6
Published: about 8 years ago

10.3758/s13428-018-1042-7

The Schultz MIDI Benchmarking Toolbox for MIDI interfaces, percussion pads, and sound cards
Cited by: 9
Author(s): Benjamin G. Schultz
Software Mentions: 6
Published: about 6 years ago

10.15252/msb.20167058

Mechanism for microbial population collapse in a fluctuating resource environment
Cited by: 21
Author(s): Serdar Turkarslan, Arjun V. Raman, Anne Thompson, Christina E. Arens, Mark A. Gillespie, Frederick von Netzer, Kristina L. Hillesland, Sergey Stolyar, Adrián López García de Lomana, David J Reiss, Drew Gorman‐Lewis, Grant M. Zane, Jeffrey A. Ranish, Judy D. Wall, David A. Stahl, Nitin S. Baliga
Software Mentions: 5
Published: about 7 years ago

10.15252/emmm.201911115

Disease modeling of a mutation in α‐actinin 2 guides clinical therapy in hypertrophic cardiomyopathy
Cited by: 77
Author(s): Maksymilian Prondzynski, Marc D. Lemoine, Antonia T.L. Zech, András Horváth, Vittoria Di Mauro, Jussi T. Koivumäki, Nico Kresin, Josefine Busch, T. Krause, Elisabeth Krämer, Saskia Schlossarek, Michael Spohn, Felix W. Friedrich, Julia Münch, Sandra D. Laufer, Charles Redwood, Alexander E Volk, Arne Hansen, Giulia Mearini, Daniele Catalucci, Christian Meyer, Torsten Christ, Monica Patten, Thomas Eschenhagen, Lucie Carrier
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2172-9-8

Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
Cited by: 219
Author(s): Honghuang Lin, Surajit Ray, Songsak Tongchusak, Ellis L. Reinherz, Vladimir Brusic
Software Mentions: 5
Published: about 16 years ago

10.1002/hep4.1749

Meta‐analysis and Consolidation of Farnesoid X Receptor Chromatin Immunoprecipitation Sequencing Data Across Different Species and Conditions
Cited by: 4
Author(s): Emilian Jungwirth, Katrin Panzitt, Hanns‐Ulrich Marschall, Gerhard Thallinger, Martin Wagner
Software Mentions: 5
Published: almost 3 years ago

10.1186/s40168-017-0322-2

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
Cited by: 147
Author(s): Nina Dombrowski, Kiley W. Seitz, Andreas Teske, Brett J. Baker
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2105-15-158

KRLMM: an adaptive genotype calling method for common and low frequency variants
Cited by: 4
Author(s): Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie
Software Mentions: 4
Published: almost 10 years ago

10.1111/gcb.15439

Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
Cited by: 38
Author(s): Ryan M. Mushinski, Zachary Payne, Jonathan D. Raff, Matthew E. Craig, S. E. Pusede, Douglas B. Rusch, Jeffrey R. White, Richard P. Phillips
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1006760

Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data
Cited by: 6
Author(s): Vikash Pandey, Vassily Hatzimanikatis
Software Mentions: 4
Published: about 5 years ago

10.15252/msb.20209653

Single‐cell imaging of genome organization and dynamics
Cited by: 22
Author(s): Liangqi Xie, Zhe Liu
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0211854

The impact of the method of extracting metabolic signal from 1H-NMR data on the classification of samples: A case study of binning and BATMAN in lung cancer
Cited by: 7
Author(s): Trishanta Padayachee, Tatsiana Khamiakova, Evelyne Louis, Peter Adriaensens, Tomasz Burzykowski
Software Mentions: 4
Published: over 5 years ago

10.1186/2042-5783-2-3

Metagenomics - a guide from sampling to data analysis
Cited by: 673
Author(s): Torsten Thomas, Jack Gilbert, Patrick Meyer
Software Mentions: 4
Published: over 12 years ago

10.3389/fninf.2019.00056

Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform
Cited by: 7
Author(s): Raghu Sesha Iyengar, Madhav Vinodh Pithapuram, Amreek Singh, Madhusudan Raghavan
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2019.01206

Propionate-Producing Consortium Restores Antibiotic-Induced Dysbiosis in a Dynamic in vitro Model of the Human Intestinal Microbial Ecosystem
Cited by: 70
Author(s): Racha El Hage, Emma Hernandez-Sanabria, Marta Calatayud, Ruben Props, Tom Van de Wiele
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of <i>Mollicutes</i> Associated with the Eastern Oyster, <i>Crassostrea virginica</i>
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: almost 3 years ago

10.1002/gepi.22346

Fine‐mapping and QTL tissue‐sharing information improves the reliability of causal gene identification
Cited by: 25
Author(s): Alvaro N. Barbeira, Owen Melia, Yanyu Liang, Rodrigo Bonazzola, Gao Wang, Heather E. Wheeler, François Aguet, Kristin Ardlie, Xiaoquan Wen, Hae Kyung Im
Software Mentions: 4
Published: over 3 years ago

10.1002/acm2.13384

Effect of computed tomography value error on dose calculation in adaptive radiotherapy with Elekta X‐ray volume imaging cone beam computed tomography
Cited by: 1
Author(s): Tetsuo Taniguchi, Takanori Hara, Tomohiro Shimozato, Fuminori Hyodo, Kousei Ono, Shuto Nakaya, Yoshifumi Noda, Hiroki Kato, Osamu Tanaka, Masayuki Matsuo
Software Mentions: 3
Published: almost 3 years ago

10.1371/journal.pgen.1008625

A homozygous missense variant in CACNB4 encoding the auxiliary calcium channel beta4 subunit causes a severe neurodevelopmental disorder and impairs channel and non-channel functions
Cited by: 15
Author(s): Pierre Costé de Bagneaux, Leonie von Elsner, Tatjana Bierhals, Marta Campiglio, Jessika Johannsen, Gerald J. Obermair, Maja Hempel, Bernhard E. Flucher, Kerstin Kutsche
Software Mentions: 3
Published: about 4 years ago

10.1042/BCJ20200715

Current data processing strategies for cryo-electron tomography and subtomogram averaging
Cited by: 35
Author(s): Euan Pyle, Giulia Zanetti
Software Mentions: 3
Published: about 3 years ago

10.1186/s13059-015-0596-2

Bridger: a new framework for de novo transcriptome assembly using RNA-seq data
Cited by: 246
Author(s): Zheng Chang, Guojun Li, Juntao Liu, Yu Zhang, Cody Ashby, De Li Liu, Carole L. Cramer, Xiuzhen Huang
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2017.02022

Rhizosphere Microbiome Recruited from a Suppressive Compost Improves Plant Fitness and Increases Protection against Vascular Wilt Pathogens of Tomato
Cited by: 72
Author(s): Anastasis Antoniou, Maria-Dimitra Tsolakidou, Ioannis A. Stringlis, Iakovos S. Pantelides
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0249326

An effort-based social feedback paradigm reveals aversion to popularity in socially anxious participants and increased motivation in adolescents
Cited by: 5
Author(s): Dienke J. Bos, Emily D. Barnes, Benjamin M. Silver, Eliana L. Ajodan, Elysha Clark-Whitney, Matthew A. Scult, Jonathan D. Power, Rebecca M. Jones
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0249970

Psychometric properties of a screening tool for autism in the community—The Indian Autism Screening Questionnaire (IASQ)
Cited by: 5
Author(s): Surajit Chakraborty, Triptish Bhatia, Vikas Kumar Sharma, Nitin Antony, Dhritishree Das, Sushree Sahu, Surya Prakash Sharma, Vandana Shriharsh, Jaspreet S. Brar, Satish Iyengar, Ravinder Singh, Vishwajit L. Nimgaonkar, Smita N. Deshpande
Software Mentions: 3
Published: about 3 years ago

10.1186/s12859-017-1597-9

M-AMST: an automatic 3D neuron tracing method based on mean shift and adapted minimum spanning tree
Cited by: 8
Author(s): Wan Zhang, Yishan He, Ming Hao, Jian Yang, Ning Zhong
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0215396

Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting
Cited by: 17
Author(s): Natalia Maria Silva, Aline Márcia Silva Araújo de Oliveira, Stefania Pegorin, Camila Escandura Giusti, Vitor Baptista Ferrari, Deibs Barbosa, Luciane Martins, Carlos L. Morais, João Carlos Setúbal, Suzan Pantaroto de Vasconcellos, da Silva, Júlio Cézar Franco de Oliveira, Renata C. Pascon, Cristina Viana-Niero
Software Mentions: 3
Published: about 5 years ago

10.1007/s10664-019-09707-8

Search-based multi-vulnerability testing of XML injections in web applications
Cited by: 10
Author(s): Sadeeq Jan, Annibale Panichella, Andrea Arcuri, Lionel C. Briand
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0251073

Risk-taking unmasked: Using risky choice and temporal discounting to explain COVID-19 preventative behaviors
Cited by: 26
Author(s): Kaileigh A. Byrne, Stephanie G. Six, Reza Ghaiumy Anaraky, Maggie W. Harris, Emma Winterlind
Software Mentions: 3
Published: about 3 years ago

10.3389/fped.2019.00315

Infant Brain Structural MRI Analysis in the Context of Thoracic Non-cardiac Surgery and Critical Care
Cited by: 15
Author(s): Chandler R. L. Mongerson, Sophie L. Wilcox, Stacy M. Goins, Danielle B. Pier, David Zurakowski, Russell W. Jennings, Dusica Bajic
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2105-8-157

Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures
Cited by: 21
Author(s): Xin Lü, David L. Perkins
Software Mentions: 3
Published: about 17 years ago

10.1186/1471-2105-11-421

Microarray meta-analysis database (M2DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database
Cited by: 35
Author(s): Wei‐Chung Cheng, Min-Lung Tsai, Cheng-Wei Chang, Ching-Lung Huang, Chaang-Ray Chen, Wun‐Yi Shu, Yun‐Shien Lee, Tzu‐Hao Wang, Ji-Hong Hong, Chia-Yang Li, Ian C. Hsu
Software Mentions: 3
Published: almost 14 years ago

10.3390/genes11040460

An Improved Phenotype-Driven Tool for Rare Mendelian Variant Prioritization: Benchmarking Exomiser on Real Patient Whole-Exome Data
Cited by: 36
Author(s): Valentina Cipriani, Nikolas Pontikos, Gavin Arno, Panagiotis I. Sergouniotis, Eva Lenassi, Penpitcha Thawong, Daniel Daniš, Michel Michaelides, Andrew R. Webster, Anthony T. Moore, Peter N. Robinson, Julius O. B. Jacobsen, Damian Smedley
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0126631

Development and Validation of a Novel Platform-Independent Metastasis Signature in Human Breast Cancer
Cited by: 11
Author(s): Shuang G. Zhao, Mark Shilkrut, Corey Speers, Meilan Liu, Kari Wilder-Romans, Theodore S. Lawrence, Lori J. Pierce, Felix Y. Feng
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0243485

Local hypergraph clustering using capacity releasing diffusion
Cited by: 4
Author(s): Rania Ibrahim, David F. Gleich
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph16071298

When Do Service Employees Suffer More from Job Insecurity? The Moderating Role of Coworker and Customer Incivility
Cited by: 29
Author(s): Yuhyung Shin, Won‐Moo Hur
Software Mentions: 3
Published: about 5 years ago

10.3390/s18051643

Analyzing Cyber-Physical Threats on Robotic Platforms
Cited by: 30
Author(s): Khalil M. Ahmad Yousef, Anas AlMajali, Salah Abu Ghalyon, Waleed Dweik, Bassam Jamil Mohd
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-40000-2

Identification and Characterization of a Dominant Sulfolane-Degrading Rhodoferax sp. via Stable Isotope Probing Combined with Metagenomics
Cited by: 19
Author(s): Christopher P. Kasanke, R. Eric Collins, Mary Beth Leigh
Software Mentions: 3
Published: about 5 years ago

10.1186/s13643-020-01502-7

PRISMA extension for moxibustion 2020: recommendations, explanation, and elaboration
Cited by: 8
Author(s): Xuan Zhang, Ran Tan, Wai Ching Lam, Chung Wah Cheng, Liang Yao, Xiao Qin Wang, Si Yao Li, Qi Ying Aixinjueluo, Ke Yang, Hulan Shang, Tai Xiang Wu, Aiping Lyu, Zhaoxiang Bian
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pbio.3001318

Step-by-step guide to efficient subtomogram averaging of virus-like particles with Dynamo
Cited by: 19
Author(s): Stefano Scaramuzza, Daniel Castaño-Díez
Software Mentions: 3
Published: over 2 years ago

10.15252/msb.20209840

From chemoproteomic‐detected amino acids to genomic coordinates: insights into precise multi‐omic data integration
Cited by: 7
Author(s): Maria Palafox, Heta S Desai, Valerie A. Arboleda, Keriann M. Backus
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-015-0824-5

M3-S: a genotype calling method incorporating information from samples with known genotypes
Cited by: 0
Author(s): Gengxin Li, Hongyu Zhao
Software Mentions: 3
Published: over 8 years ago

10.1111/tpj.14538

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence
Cited by: 82
Author(s): Tyler Alioto, Konstantinos G. Alexiou, Amélie Bardil, Fabio Barteri, Raúl Castanera, Fernando Cruz, Amit Dhingra, Henri Duval, Angel V. Fernández i Martí, Leonor Frías, Beatriz Galán, José Luis Garcı́a, Werner Howad, Jèssica Gómez‐Garrido, Marta Gut, Irene Julca, Jordi Morata, Pere Puigdomènech, Paolo Ribeca, María José Rubio Cabetas, Anna Vlasova, M. Wirthensohn, Jordi García-Más, Toni Gabaldón, Josep M. Casacuberta, Pere Arús
Software Mentions: 3
Published: over 4 years ago

10.1038/srep33262

Subpathway-CorSP: Identification of metabolic subpathways via integrating expression correlations and topological features between metabolites and genes of interest within pathways
Cited by: 13
Author(s): Chenchen Feng, Jian Zhang, Xuecang Li, Bo Ai, Junwei Han, Qiuyu Wang, Taiming Wei, Yong Xu, Meng Li, Shang Li, Chao Song, Chunquan Li
Software Mentions: 3
Published: over 7 years ago

10.1007/978-3-030-50991-0_1

The Quest for Innovation: Addressing User Needs and Value Creation
Cited by: 2
Author(s): Hugo Campos
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-84080-5

Persistent COUP-TFII expression underlies the myopathy and impaired muscle regeneration observed in resistance to thyroid hormone-alpha
Cited by: 1
Author(s): Paola Aguiari, Yanyun Liu, Astgik Petrosyan, Sheue-yann Cheng, Gregory A. Brent, Laura Perin, Anna Milanesi
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-020-66728-w

GlioM&amp;M: Web-based tool for studying circulating and infiltrating monocytes and macrophages in glioma
Cited by: 9
Author(s): Erik R. Abels, Sybren L. N. Maas, Eric C. Tai, David T. Ting, Marike L. D. Broekman, Xandra O. Breakefield, Joseph El Khoury
Software Mentions: 3
Published: almost 4 years ago

10.1120/jacmp.v8i4.2488

Forward-planning intensity-modulated radiotherapy technique for prostate cancer
Cited by: 2
Author(s): Mohamed Metwaly, Awaad Mousa Awaad, El-Sayed Mahmoud El-Sayed, Abdel Sattar M. Sallam
Software Mentions: 2
Published: over 16 years ago

10.3390/biom10091289

Nucleotide Loading Modes of Human RNA Polymerase II as Deciphered by Molecular Simulations
Cited by: 2
Author(s): Nicolas Edmond Genin, Robert O. J. Weinzierl
Software Mentions: 2
Published: over 3 years ago

10.1002/hbm.24948

White matter extension of the Melbourne Children's Regional Infant Brain atlas: M‐CRIB‐WM
Cited by: 9
Author(s): Bonnie Alexander, Joseph Yuan-Mou Yang, Sarah Hui Wen Yao, Michelle Hao Wu, Jian Chen, Claire E. Kelly, Gareth Ball, Lillian G. Matthews, Marc L. Seal, Peter J. Anderson, Lex W. Doyle, Jeanie L.Y. Cheong, Alicia J Spittle, Deanne K. Thompson
Software Mentions: 2
Published: about 4 years ago

10.1186/s12955-020-1280-0

Psychometric properties of the Malay version of the Diabetes Empowerment Scale among Hospital Serdang type 2 diabetes mellitus patients using exploratory factor analysis
Cited by: 6
Author(s): Siew Mooi Ching, Anne Yee, Ping Yein Lee, Vasudevan Ramachandran, Khai Mun Shum, Nur Fati’Izzati Ismael, Wan Aliaa Wan Sulaiman, Fan Kee Hoo, Yoke Loong Foo, Kai Wei Lee, Mahmoud Danaee, Kit‐Aun Tan
Software Mentions: 2
Published: over 4 years ago

10.1016/j.gpb.2017.07.002

OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation
Cited by: 13
Author(s): Soheil Jahangiri, Limsoon Wong, Changiz Eslahchi
Software Mentions: 2
Published: over 6 years ago

10.1186/s13059-020-02121-0

PSCAN: Spatial scan tests guided by protein structures improve complex disease gene discovery and signal variant detection
Cited by: 9
Author(s): Zheng-Zheng Tang, Gregory Sliwoski, Guanhua Chen, Bowen Jin, William S. Bush, Bingshan Li, John A. Capra
Software Mentions: 2
Published: over 3 years ago

10.1186/s13012-015-0225-1

The Guideline Implementability Decision Excellence Model (GUIDE-M): a mixed methods approach to create an international resource to advance the practice guideline field
Cited by: 43
Author(s): Melissa Brouwers, Julie Makarski, Monika Kastner, Leigh Hayden, Onil Bhattacharyya
Software Mentions: 2
Published: about 9 years ago

10.1120/jacmp.v9i4.2783

Comparison of intensity-modulated radiotherapy and forward-planning dynamic arc therapy techniques for prostate cancer
Cited by: 6
Author(s): Mohamed Metwaly, Awaad Mousa Awaad, El-Sayed Mahmoud El-Sayed, Abdel Sattar M. Sallam
Software Mentions: 2
Published: over 15 years ago

10.3205/000280

Guideline-conform translation and cultural adaptation of the Addenbrooke's Cognitive Examination III into German.
Cited by: 2
Author(s): Björn Weiß, Julius J. Grunow, Max Rosenthal, David Hilfrich, Rudolf Mörgeli, Bruno Neuner, Friedrich Borchers, Antje Kraft, Henning Krampe, Claudia Denke, Claudia Spies
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.16356

Pyridostigmine improves cardiac function and rhythmicity through RyR2 stabilization and inhibition of STIM1‐mediated calcium entry in heart failure
Cited by: 3
Author(s): Stephen Baine, Ingrid M. Bonilla, Andriy E. Belevych, А. В. Степанов, Lisa E. Dorn, Radmila Terentyeva, Dmitry Terentyev, Federica Accornero, Cynthia A. Carnes, Sándor Györke
Software Mentions: 2
Published: about 3 years ago

10.1093/bioinformatics/bts382

REVEAL--visual eQTL analytics
Cited by: 0
Author(s): Günter Jäger, Florian Battke, Kay Nieselt
Software Mentions: 2
Published: over 11 years ago

10.3897/BDJ.6.e28073

A story of data won, data lost and data re-found: the realities of ecological data preservation
Cited by: 10
Author(s): Alison Specht, Matthew P. Bolton, Bryn Kingsford, R. L. Specht, Lee Belbin
Software Mentions: 2
Published: over 5 years ago

10.1186/s12913-017-2747-5

Rheumatic heart disease: infectious disease origin, chronic care approach
Cited by: 35
Author(s): Judith M. Katzenellenbogen, Anna P. Ralph, Rosemary Wyber, Jonathan R. Carapetis
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-9-214

M-BISON: Microarray-based integration of data sources using networks
Cited by: 9
Author(s): Bernie J. Daigle, Russ B. Altman
Software Mentions: 2
Published: about 16 years ago

10.3389/fpsyg.2019.00467

The Light vs. Dark Triad of Personality: Contrasting Two Very Different Profiles of Human Nature
Cited by: 122
Author(s): Scott Barry Kaufman, David B. Yaden, Elizabeth Hyde, Eli Tsukayama
Software Mentions: 2
Published: about 5 years ago

10.3389/fpsyg.2020.01100

Design, Implementation and Evaluation of an Emotional Education Program: Effects on Academic Performance
Cited by: 6
Author(s): María-José Mira-Galvañ, Raquel Gilar Corbí
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpsyg.2020.00072

Estimation of Response Styles Using the Multidimensional Nominal Response Model: A Tutorial and Comparison With Sum Scores
Cited by: 5
Author(s): Carl F. Falk, Unhee Ju
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2019.01133

Detecting Large Chromosomal Modifications Using Short Read Data From Genotyping-by-Sequencing
Cited by: 18
Author(s): Jens Keilwagen, Heike Lehnert, Thomas Berner, Sebastian Beier, Uwe Scholz, Axel Himmelbach, Nils Stein, Е. Д. Бадаева, Daniel Lang, Benjamin Kilian, Bernd Hackauf, Dragan Perović
Software Mentions: 2
Published: over 4 years ago

10.3389/fpsyg.2021.626750

A Systematic Review Examining the Relationship Between Habit and Physical Activity Behavior in Longitudinal Studies
Cited by: 22
Author(s): Katharina Feil, Sarah Allion, Susanne Weyland, Darko Jekauc
Software Mentions: 2
Published: about 3 years ago

10.1111/1471-0528.16005

Development of the FAST‐M maternal sepsis bundle for use in low‐resource settings: a modified Delphi process
Cited by: 9
Author(s): David Lissauer, James Cheshire, Catherine Dunlop, Fatima Taki, Amie Wilson, Jeffrey M. Smith, Ron Daniels, Niranjan Kissoon, Address Malata, Thomson Chirwa, Victoria Mayamingie Lwesha, Chisale Mhango, Edward Mhango, Charles Makwenda, Lumbani Banda, Laura Munthali, Bejoy Nambiar, Julia Hussein, Helen Williams, Adam J. Devall, Ioannis D Gallos, Abi Merriel, Mercedes Bonet, João Paulo Souza, Arri Coomarasamy
Software Mentions: 2
Published: over 4 years ago

10.1111/jcpp.12751

Predictors and pathways of language and motor development in four prospective cohorts of young children in Ghana, Malawi, and Burkina Faso
Cited by: 53
Author(s): Elizabeth L. Prado, Souheila Abbeddou, Seth Adu‐Afarwuah, Mary Arimond, Per Ashorn, Ulla Ashorn, Jaden Bendabenda, Kenneth H. Brown, Sonja Y. Hess, Emma Kortekangas, Anna Lartey, Kenneth Maleta, Brietta M. Oaks, Eugenia Ocansey, Harriet Okronipa, Jean Bosco Ouédraogo, Anna Pulakka, Jérôme W. Somé, Christine P Stewart, Robert C. Stewart, Stephen A. Vosti, Elizabeth Yakes Jimenez, Kathryn G. Dewey
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2016.01790

Distribution and Classification of Serine β-Lactamases in Brazilian Hospital Sewage and Other Environmental Metagenomes Deposited in Public Databases
Cited by: 10
Author(s): Adriana M. Fróes, Fábio Faria da Mota, Rafael R. C. Cuadrat, Alberto M. R. Dávila
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules25020310

Occurrence of the Persistent Antimicrobial Triclosan in Microwave Pretreated and Anaerobically Digested Municipal Sludges under Various Process Conditions
Cited by: 8
Author(s): Gokce Kor-Bicakci, Timothy Abbott, Emine Ubay‐Cokgor, Çiğdem Eskicioğlu
Software Mentions: 2
Published: over 4 years ago

10.3389/fnhum.2020.560630

Neuromechanics of Dynamic Balance Tasks in the Presence of Perturbations
Cited by: 4
Author(s): Victor Munoz-Martel, Alessandro Santuz, Sebastian Böhm, Adamantios Arampatzis
Software Mentions: 2
Published: over 3 years ago

10.1186/s12889-020-08912-1

Rural chronic disease research patterns in the United Kingdom, United States, Canada, Australia and New Zealand: a systematic integrative review
Cited by: 16
Author(s): Rebecca Disler, Kristen Glenister, Julian Wright
Software Mentions: 2
Published: almost 4 years ago

10.1093/database/bay087

MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
Cited by: 1
Author(s): Peter C. Marks, Marc B. Bigler, Eric Alsop, Adrien Vigneron, Bart P. Lomans, Renato De Paula, Brett Geissler, Nicolas Tsesmetzis
Software Mentions: 2
Published: over 6 years ago

10.1159/000366040

The Mini-Addenbrooke's Cognitive Examination: A New Assessment Tool for Dementia
Cited by: 182
Author(s): Sharpley Hsieh, Sarah McGrory, Felicity Leslie, Kate Dawson, Samrah Ahmed, Chris Butler, James B. Rowe, Eneida Mioshi, John R. Hodges
Software Mentions: 2
Published: over 9 years ago

10.1002/fsn3.1536

Sensitivity analysis of the precooling process of strawberry: Effect of package designing parameters and the moisture loss
Cited by: 10
Author(s): Habibeh Nalbandi, Sadegh Seiiedlou
Software Mentions: 2
Published: about 4 years ago

10.1002/mbo3.852

Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean
Cited by: 21
Author(s): Olivier Pereira, Corentin Hochart, Jean‐Christophe Auguet, Didier Debroas, Pierre E. Galand
Software Mentions: 2
Published: almost 5 years ago

10.1111/aor.13681

Development of a novel automatic ascites filtration and concentration equipment with multi‐ring‐type roller pump units for cell‐free and concentrated ascites reinfusion therapy
Cited by: 1
Author(s): Toshiya Okahisa, Masamichi Sogabe, Tadahiko Nakagawa, Kumiko Tanaka, Tetsu Tomonari, Tatsuya Taniguchi, Akira Takahashi, Yohsuke Kinouchi, Junji Nishioka, Naoki Igata, Hiroaki Yanagawa, Takatoshi Komatsu, Yoshiaki Ohnishi, Minoru Fukuhara, Masashi Ishikawa, Hironobu Shibata, H Shinomiya, Masahiko Nakasono, Fumi Kishi, Keiko Komai, Yayoi Tatsuki, Toru Murashima, Yoshihiro Deguchi, Hiroshi Aramaki, Hideyuki Fukumitsu, Tetsuji Takayama
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0126141

Research on Laser Marking Speed Optimization by Using Genetic Algorithm
Cited by: 7
Author(s): Dongyun Wang, Qiwei Yu, Yu Zhang
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0027069

Diagnostic Accuracy, Effectiveness and Cost for Cognitive Impairment and Dementia Screening of Three Short Cognitive Tests Applicable to Illiterates
Cited by: 45
Author(s): C. Carnero-Pardo, Beatriz Espejo-Martínez, Samuel López-Alcalde, María Espinosa-García, Carmen Sáez-Zea, Elisa Hernández Torres, José Luis Navarro Espigares, Rosa Vílchez-Carrillo
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0012315

A Critical Analysis of Atoh7 (Math5) mRNA Splicing in the Developing Mouse Retina
Cited by: 15
Author(s): Lev Prasov, Nadean L. Brown, Thomas Gläser
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0252571

Molecular dynamics analysis of N-acetyl-D-glucosamine against specific SARS-CoV-2’s pathogenicity factors
Cited by: 8
Author(s): Ömür Baysal, Naeem Abdul Ghafoor, Ragıp Soner Silme, А. Н. Игнатов, Volha Kniazeva
Software Mentions: 2
Published: almost 3 years ago

10.1371/journal.pone.0207606

Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution
Cited by: 12
Author(s): Priscila Anabel Calderoli, Fernando Julian Espinola, Hebe M. Dionisi, Mónica N. Gil, Janet Jansson, Mariana Lozada
Software Mentions: 2
Published: over 5 years ago

10.3390/ma12111858

Mesh-Based and Meshfree Reduced Order Phase-Field Models for Brittle Fracture: One Dimensional Problems
Cited by: 8
Author(s): Ngoc H. Nguyen, Vinh Phu Nguyen, Jian Wu, Thanh-Long Le, Yan Ding
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0061265

Construction of Core Collections Suitable for Association Mapping to Optimize Use of Mediterranean Olive (Olea europaea L.) Genetic Resources
Cited by: 80
Author(s): Ahmed El Bakkali, Hicham Haouane, Abdelmajid Moukhli, Evelyne Costes, Patrick Van Damme, Bouchaïb Khadari
Software Mentions: 2
Published: about 11 years ago

10.3390/molecules20033955

Metabolites Software-Assisted Flavonoid Hunting in Plants Using Ultra-High Performance Liquid Chromatography-Quadrupole-Time of Flight Mass Spectrometry
Cited by: 15
Author(s): Wan-Yi Gu, Na Li, Elaine Lai‐Han Leung, Hua Zhou, Guoan Luo, Liang Liu, Jian‐Lin Wu
Software Mentions: 2
Published: about 9 years ago

10.1186/s13104-015-1122-z

Power of counter movement jumps with external load – coherence of three assessment methods
Cited by: 2
Author(s): Marie Hilmersson, Ida Edvardsson, Åsa Tornberg
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.02536

The GbsR Family of Transcriptional Regulators: Functional Characterization of the OpuAR Repressor
Cited by: 5
Author(s): Stefanie Ronzheimer, Bianca Warmbold, Christian Arnhold, Erhard Bremer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0235535

The effect of the CONSORT statement on the amount of “unclear” Risk of Bias reporting in Cochrane Systematic Reviews
Cited by: 5
Author(s): Maaike M. Rademaker, Geerte G. J. Ramakers, A.L. Smit, Lotty Hooft, Inge Stegeman
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0018755

Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
Cited by: 82
Author(s): Leonidas Salichos, Antonis Rokas
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0163276

Real-Time Shear Wave versus Transient Elastography for Predicting Fibrosis: Applicability, and Impact of Inflammation and Steatosis. A Non-Invasive Comparison
Cited by: 25
Author(s): Thierry Poynard, Tam N. Pham, Hugo Perazzo, Mona Munteanu, E. Luckina, Djamel Elaribi, Yen Ngo, Luminita Bonyhay, N. Seurat, M. Legroux, An Ngo, Olivier Deckmyn, Dominique Thabut, Vlad Ratziu, O. Lucidarme, Fibrofrance-Hecam
Software Mentions: 2
Published: over 7 years ago

10.3390/life11030192

Transfer of Antibiotic Resistance Plasmid from Commensal E. coli towards Human Intestinal Microbiota in the M-SHIME: Effect of E. coli dosis, Human Individual and Antibiotic Use
Cited by: 4
Author(s): Ellen Lambrecht, Els Van Coillie, Nico Boon, Marc Heyndrickx, Tom Van de Wiele
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pntd.0000326

Stage- and Gender-Specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products
Cited by: 129
Author(s): Yovany Moreno, Timothy G. Geary
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0072395

A Metastable Equilibrium Model for the Relative Abundances of Microbial Phyla in a Hot Spring
Cited by: 19
Author(s): Jeffrey M. Dick, Everett L. Shock
Software Mentions: 2
Published: over 10 years ago