Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000524

https://doi.org/10.1099/mgen.0.000524

BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access

Cited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Published: almost 4 years ago

Software Mentions 12

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: genbankr
Parsing GenBank files into semantically useful objects
Papers that mentioned: 2
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: plyranges
A fluent interface for manipulating GenomicRanges
Papers that mentioned: 8
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Papers that mentioned: 35
cran: kableExtra
Construct Complex Table with 'kable' and Pipe Syntax
Papers that mentioned: 21
cran: tidygraph
A Tidy API for Graph Manipulation
Papers that mentioned: 23
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
Papers that mentioned: 10
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: M
M
Papers that mentioned: 418