cran: ggsci | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2021.616967

A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation
Cited by: 12
Author(s): Kristin Schubert, Isabel Karkossa, Jana Schor, Beatrice Engelmann, Lisa Maria Steinheuer, Tony Bruns, Ulrike Rolle-Kampczyk, Jörg Hackermüller, Martin von Bergen
Software Mentions: 24
Published: over 3 years ago

10.3390/cells8091045

Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake
Cited by: 12
Author(s): Fabian Kern, Nicole Ludwig, Christina Backes, Esther Maldener, Tobias Fehlmann, Artur Suleymanov, Eckart Meese, Anne Hecksteden, Andreas Keller, Tim Meyer
Software Mentions: 21
Published: over 5 years ago

10.1038/s41421-020-00226-1

Patient-derived SARS-CoV-2 mutations impact viral replication dynamics and infectivity in vitro and with clinical implications in vivo
Cited by: 68
Author(s): Hang‐Ping Yao, Xiangyun Lu, Qiong Chen, Kaijin Xu, Yu Chen, Ming-Hui Cheng, Keda Chen, Linfang Cheng, Tian-Hao Weng, Danrong Shi, Fumin Liu, Zhigang Wu, Mingjie Xie, Haibo Wu, Changzhong Jin, Min Zheng, Nanping Wu, Chao Jiang, Lanjuan Li
Software Mentions: 21
Published: about 4 years ago

10.1093/molbev/msaa311

A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host Resistance
Cited by: 15
Author(s): Camille Ameline, Yann Bourgeois, Felix Vögtli, Eevi Savola, Jason P. Andras, Jan Engelstädter, Dieter Ebert
Software Mentions: 19
Published: about 4 years ago

10.3389/fimmu.2020.01691

Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies
Cited by: 22
Author(s): Tony Yao, Parisa Shooshtari, S. M. Mansour Haeryfar
Software Mentions: 18
Published: over 4 years ago

10.3389/fimmu.2021.620270

Non-Genomic AhR-Signaling Modulates the Immune Response in Endotoxin-Activated Macrophages After Activation by the Environmental Stressor BaP
Cited by: 18
Author(s): Henning Großkopf, Katharina Walter, Isabel Karkossa, Martin von Bergen, Kristin Schubert
Software Mentions: 18
Published: over 3 years ago

10.18632/aging.103499

Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissue
Cited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Software Mentions: 18
Published: over 4 years ago

10.3390/cells10092367

The Emerging Plasticizer Alternative DINCH and Its Metabolite MINCH Induce Oxidative Stress and Enhance Inflammatory Responses in Human THP-1 Macrophages
Cited by: 16
Author(s): Alexandra Schaffert, Josi Arnold, Isabel Karkossa, Matthias Blüher, Martin von Bergen, Kristin Schubert
Software Mentions: 16
Published: over 3 years ago

10.3389/fimmu.2021.668391

A Transcriptional Signature of PDGF-DD Activated Natural Killer Cells Predicts More Favorable Prognosis in Low-Grade Glioma
Cited by: 21
Author(s): Yuhan Sun, Alexander James Sedgwick, Yaseelan Palarasah, Stefano Mangiola, Alexander D. Barrow
Software Mentions: 15
Published: over 3 years ago

10.3390/plants10040615

Polyphenol Diversity and Antioxidant Activity of European Cistus creticus L. (Cistaceae) Compared to Six Further, Partly Sympatric Cistus Species
Cited by: 11
Author(s): Brigitte Lukas, Laura Bragagna, Katharina Starzyk, Klaudia Labedz, Klaus Stolze, Johannes Novak
Software Mentions: 14
Published: over 3 years ago

10.1186/s12864-021-07542-0

Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn
Cited by: 8
Author(s): Songlin Guo, Shouxiong Huang, Xi Jiang, Haiyang Hu, Dingding Han, Carlos S. Moreno, Genevieve Fairbrother, David A. Hughes, Mark Stoneking, Philipp Khaitovich
Software Mentions: 13
Published: over 3 years ago

10.1099/mgen.0.000524

BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access
Cited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Software Mentions: 12
Published: almost 4 years ago

10.3389/fonc.2019.01361

Development and Validation of an RNA-Seq-Based Prognostic Signature in Neuroblastoma
Cited by: 28
Author(s): Jianguo Zhou, Bo Liang, Sanli Jin, Hui-Ling Liao, Guocheng Du, Long Cheng, Hu Ma, Udo S. Gaipl
Software Mentions: 12
Published: about 5 years ago

10.1111/eva.13209

Mixed‐stock analysis using Rapture genotyping to evaluate stock‐specific exploitation of a walleye population despite weak genetic structure
Cited by: 17
Author(s): Peter T. Euclide, Tom MacDougall, Jason M. Robinson, Matthew D. Faust, Chris C. Wilson, Kuan‐Yu Chen, Elizabeth A. Marschall, Wesley A. Larson, Stuart A. Ludsin
Software Mentions: 10
Published: over 3 years ago

10.3389/fmicb.2021.642543

Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites
Cited by: 6
Author(s): Jorge Doña, Stephany Virrueta Herrera, Tommi Nyman, Mervi Kunnasranta, Kevin P. Johnson
Software Mentions: 10
Published: over 3 years ago

10.1530/EC-21-0027

Tumor growth rate in pancreatic neuroendocrine tumor patients undergoing PRRT with 177Lu-DOTATATE
Cited by: 4
Author(s): Olof Pettersson, Katarzyna Fröss-Baron, Joakim Crona, Anders Sundín
Software Mentions: 9
Published: over 3 years ago

10.1073/pnas.2100542118

Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself
Cited by: 9
Author(s): Balázs Koncz, Gergő Mihály Balogh, Benjamin Tamás Papp, Leó Asztalos, Lajos Kemény, Máté Manczinger
Software Mentions: 9
Published: over 3 years ago

10.1186/s13148-020-00889-3

The MLH1 polymorphism rs1800734 and risk of endometrial cancer with microsatellite instability
Cited by: 6
Author(s): Holly Russell, Katarzyna Kedzierska, Daniel D. Buchanan, Russell J. Thomas, Emma Tham, Miriam Mints, Anne Keränen, Graham G. Giles, Melissa C. Southey, Roger L. Milne, Ian Tomlinson, David N. Church, Amanda B. Spurdle, Tracy A. O’Mara, Annabelle Lewis
Software Mentions: 8
Published: over 4 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: almost 4 years ago

10.3389/fmicb.2020.594928

Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity
Cited by: 45
Author(s): Sunil K. Raghav, Arup Ghosh, Jyotirmayee Turuk, Satish Kumar, Atimukta Jha, Swati Madhulika, Manasi Priyadarshini, Viplov Kumar Biswas, P. Sushree Shyamli, Balveer Singh, Neha Singh, Deepika Singh, Ankita Datey, Kiran Avula, Shuchi Smita, Jyotsnamayee Sabat, Debdutta Bhattacharya, Jaya Singh Kshatri, Dileep Vasudevan, Amol Ratnakar Suryawanshi, Rupesh Dash, Shantibhusan Senapati, Tushar Kant Beuria, Roy Swain, Soma Chattopadhyay, Gulam Hussain Syed, Anshuman Dixit, Punit Prasad, Sanghamitra Pati, Ajay Parida
Software Mentions: 8
Published: about 4 years ago

10.7554/eLife.59654

HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitness
Cited by: 19
Author(s): Jessica Sy Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Tommaso Tabaglio, Jingxian Zhang, Heike Wollmann, Leilei Chen, Ömer An, Tim Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen Mann, Eva Hernando, David J. Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 7
Published: over 3 years ago

10.1186/s12864-021-07917-3

Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing
Cited by: 6
Author(s): Henrik Christiansen, Franz M. Heindler, Bart Hellemans, Quentin Jossart, Francesca Pasotti, Henri Robert, Marie Verheye, Bruno Danis, Marc Kochzius, Frédérik Leliaert, Camille Moreau, Tasnim Patel, Anton P. Van de Putte, Ann Vanreusel, Filip Volckaert, Isa Schön
Software Mentions: 7
Published: over 3 years ago

10.3389/fped.2020.623184

Timing of Newborn Blood Collection Alters Metabolic Disease Screening Performance
Cited by: 13
Author(s): Gang Peng, Yishuo Tang, Tina M. Cowan, Hongyu Zhao, Curt Scharfe
Software Mentions: 7
Published: almost 4 years ago

10.1002/cam4.3894

Surgical strategies for hepatocellular carcinoma located in the left lateral lobe: A propensity score‐matched and prognostic nomogram study
Cited by: 1
Author(s): Jingwen Zou, Shaohua Li, Qiaoxuan Wang, Jie Mei, Lianghe Lu, Wenping Lin, Yang Wen, Yuechao Li, Wei Wei, Rong Guo
Software Mentions: 6
Published: over 3 years ago

10.3389/fimmu.2020.583644

Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2
Cited by: 27
Author(s): Camille Martin-Gallausiaux, Antoine Malabirade, Janine Habier, Paul Wilmes
Software Mentions: 6
Published: about 4 years ago

10.7717/peerj.7310

Patterned progression of gut microbiota associated with necrotizing enterocolitis and late onset sepsis in preterm infants: a prospective study in a Chinese neonatal intensive care unit
Cited by: 16
Author(s): Jiayi Liu, Yuqing Li, Yi Feng, Liya Pan, Zhoulonglong Xie, Zhilong Yan, Li Zhang, Mingkun Li, Jianhua Zhao, Jianhua Sun, Li Hong
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-66599-1

Metabolic reprogramming related to whole-chromosome instability in models for Hürthle cell carcinoma
Cited by: 8
Author(s): Ruben D. Addie, Sarantos Kostidis, Willem E. Corver, Jan Oosting, Sepideh Aminzadeh-Gohari, René G. Feichtinger, Barbara Kofler, Mehtap Derya Aydemirli, Martin Giera, Hans Morreau
Software Mentions: 5
Published: over 4 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: over 5 years ago

10.3390/metabo11090626

Metabolic Reprogramming of Mammary Epithelial Cells during TGF-β-Induced Epithelial-to-Mesenchymal Transition
Cited by: 5
Author(s): Hua Wang, Sarantos Kostidis, Oleg A. Mayboroda, Martin Giera, Marten Hornsveld, Peter ten Dijke
Software Mentions: 5
Published: over 3 years ago

10.3389/fimmu.2019.02096

Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production
Cited by: 37
Author(s): Maarten R Hillen, Aridaman Pandit, Sofie L M Blokland, Sarita A. Y. Hartgring, Cornelis P. J. Bekker, Eefje Hanna Martine van der Heijden, Nila Hendrika Servaas, Marzia Rossato, Aike A. Kruize, Joël A G van Roon, Timothy R D J Radstake
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13081750

Combined Assessment of Immune Checkpoint Regulator VISTA on Tumor-Associated Immune Cells and Platelet-to-Lymphocyte Ratio Identifies Advanced Germ Cell Tumors with Higher Risk of Unfavorable Outcomes
Cited by: 10
Author(s): Rafał Pęksa, Michał Kunc, Marta Popęda, Michał Piątek, Michał Bieńkowski, Jolanta Żok, Anna Starzyńska, Adrian Perdyan, M Sowa, Renata Duchnowska, Wojciech Biernat
Software Mentions: 3
Published: over 3 years ago

10.3390/biomedicines9091132

High PD-L1 Expression on Tumor Cells Indicates Worse Overall Survival in Advanced Oral Squamous Cell Carcinomas of the Tongue and the Floor of the Mouth but Not in Other Oral Compartments
Cited by: 6
Author(s): Łukasz Jan Adamski, Anna Starzyńska, Paulina Adamska, Michał Kunc, Monika Sakowicz-Burkiewicz, Giulia Marvaso, Daniela Alterio, Aleksandra Korwat, Barbara Alicja Jereczek‐Fossa, Rafał Pęksa
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.640408

Genotypic Characterization of Clinical Klebsiella spp. Isolates Collected From Patients With Suspected Community-Onset Sepsis, Sweden
Cited by: 12
Author(s): Patricia Saxenborn, John D. Baxter, Andreas Tilevik, Magnus Fagerlind, Fredrik Dyrkell, Anna-Karin Pernestig, Helena Enroth, Diana Tilevik
Software Mentions: 2
Published: over 3 years ago

10.3390/jcm10173852

Analysis of Clinicopathological Factors Influencing Survival in Patients with Renal Cell Carcinoma and Venous Tumor Thrombus
Cited by: 2
Author(s): Łukasz Zapała, Sumit Sharma, Michał Kunc, Piotr Zapała, Jakub Kłącz, Piotr Korczyński, Michał Lipowski, Michał Późniak, Tomasz Suchojad, Tomasz Drewa, Marcin Matuszewski, Piotr Radziszewski
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.551220

Analysis of the Spectrum of ACE2 Variation Suggests a Possible Influence of Rare and Common Variants on Susceptibility to COVID-19 and Severity of Outcome
Cited by: 27
Author(s): Anton E. Shikov, Yury A. Barbitoff, Andrey S. Glotov, Maria M. Danilova, Ziravard N. Tonyan, Yulia A. Nasykhova, А. А. Михайлова, Olesya N. Bespalova, Roman S. Kalinin, Azizahon M. Mirzorustamova, I. Yu. Kogan, Vladislav S Baranov, Alexander N. Chernov, Dragana M. Pavlovich, Sergey V. Azarenko, Mikhail A. Fedyakov, Victoria V. Tsay, Yuri A. Eismont, О. В. Романова, Dmitry N. Hobotnikov, Dmitry A. Vologzhanin, С. В. Мосенко, Tatiana A. Ponomareva, Yana A. Talts, Anna U. Anisenkova, Д Г Лисовец, Andrey М. Sarana, Stanislav P. Urazov, Sergey G. Scherbak, Oleg S. Glotov
Software Mentions: 2
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: cran: ggsci

Papers Mentioning ggsci 35