# Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

All mentions data is based on the CZI Software Mentions dataset.

## cran projects 6,234

##### cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441

##### cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292

##### cran: MASS

Support Functions and Datasets for Venables and Ripley's MASSPapers that mentioned: 2,353

##### cran: glmnet

Lasso and Elastic-Net Regularized Generalized Linear ModelsPapers that mentioned: 1,607

##### cran: randomForest

Breiman and Cutler's Random Forests for Classification and RegressionPapers that mentioned: 1,447

##### cran: JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matricesPapers that mentioned: 1,283

##### cran: mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness EstimationPapers that mentioned: 1,251

##### cran: FactoMineR

Multivariate Exploratory Data Analysis and Data MiningPapers that mentioned: 1,101

##### cran: psych

Procedures for Psychological, Psychometric, and Personality ResearchPapers that mentioned: 1,085

##### cran: ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental SciencesPapers that mentioned: 809

##### cran: HyPhy

Macroevolutionary phylogentic analysis of species trees and gene treesPapers that mentioned: 722

##### cran: factoextra

Extract and Visualize the Results of Multivariate Data AnalysesPapers that mentioned: 650

##### cran: phytools

Phylogenetic Tools for Comparative Biology (and Other Things)Papers that mentioned: 586

##### cran: STAT

Interactive Document for Working with Basic Statistical AnalysisPapers that mentioned: 508

##### cran: survivalROC

Time-Dependent ROC Curve Estimation from Censored Survival DataPapers that mentioned: 479

##### cran: Spectrum

Fast Adaptive Spectral Clustering for Single and Multi-View DataPapers that mentioned: 450

##### cran: pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap ResamplingPapers that mentioned: 442

##### cran: e1071

Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU WienPapers that mentioned: 419

##### cran: cluster

"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.Papers that mentioned: 416

##### cran: glmmTMB

Generalized Linear Mixed Models using Template Model BuilderPapers that mentioned: 373

##### cran: TESS

Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction EventsPapers that mentioned: 359

##### cran: MatchIt

Nonparametric Preprocessing for Parametric Causal InferencePapers that mentioned: 358

##### cran: UpSetR

A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting SetsPapers that mentioned: 319