cran projects 6,234

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: PRISMA
Protocol Inspection and State Machine Analysis
Papers that mentioned: 9,815
Very Likely Science (85)
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
Very Likely Science (100)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
Very Likely Science (85)
cran: nlme
Linear and Nonlinear Mixed Effects Models
Papers that mentioned: 3,265
Very Likely Science (100)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
Very Likely Science (100)
cran: PHENIX
Phenotypic Integration Index
Papers that mentioned: 2,287
Very Likely Science (75)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
Very Likely Science (100)
cran: REST
RcmdrPlugin Easy Script Templates
Papers that mentioned: 1,757
Very Likely Science (75)
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
Very Likely Science (95)
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
Very Likely Science (85)
cran: survival
Survival Analysis
Papers that mentioned: 1,690
Very Likely Science (100)
cran: car
Companion to Applied Regression
Papers that mentioned: 1,651
Very Likely Science (100)
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
Very Likely Science (100)
cran: multcomp
Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558
Very Likely Science (75)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: DA
Discriminant Analysis for Evolutionary Inference
Papers that mentioned: 1,541
Very Likely Science (95)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
Very Likely Science (75)
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
Very Likely Science (100)
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
Very Likely Science (75)
cran: MuMIn
Multi-Model Inference
Papers that mentioned: 1,276
Very Likely Science (75)
cran: mgcv
Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
Papers that mentioned: 1,251
Very Likely Science (75)
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
Very Likely Science (85)
cran: rms
Regression Modeling Strategies
Papers that mentioned: 1,236
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: metafor
Meta-Analysis Package for R
Papers that mentioned: 1,205
Very Likely Science (100)
cran: FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
Papers that mentioned: 1,101
Very Likely Science (85)
cran: GA
Genetic Algorithms
Papers that mentioned: 1,091
Very Likely Science (100)
cran: psych
Procedures for Psychological, Psychometric, and Personality Research
Papers that mentioned: 1,085
Very Likely Science (100)
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
Very Likely Science (100)
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
Very Likely Science (100)
cran: emmeans
Estimated Marginal Means, aka Least-Squares Means
Papers that mentioned: 1,009
Very Likely Science (100)
cran: OpenStreetMap
Access to Open Street Map Raster Images
Papers that mentioned: 1,001
Very Likely Science (100)
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
Very Likely Science (75)
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
Very Likely Science (100)
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
Very Likely Science (75)
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
cran: lavaan
Latent Variable Analysis
Papers that mentioned: 814
Very Likely Science (100)
cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
Very Likely Science (85)
cran: Epi
Statistical Analysis in Epidemiology
Papers that mentioned: 805
Very Likely Science (85)
cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767
Very Likely Science (100)
cran: lsmeans
Least-Squares Means
Papers that mentioned: 758
Very Likely Science (83)
cran: HyPhy
Macroevolutionary phylogentic analysis of species trees and gene trees
Papers that mentioned: 722
Very Likely Science (85)
cran: meta
General Package for Meta-Analysis
Papers that mentioned: 706
Very Likely Science (100)
cran: matlab
'MATLAB' Emulation Package
Papers that mentioned: 666
Very Likely Science (75)
cran: SPARQL
SPARQL client
Papers that mentioned: 660
Very Likely Science (75)
cran: factoextra
Extract and Visualize the Results of Multivariate Data Analyses
Papers that mentioned: 650
Very Likely Science (85)
cran: caret
Classification and Regression Training
Papers that mentioned: 630
Very Likely Science (100)
cran: COBRA
Nonlinear Aggregation of Predictors
Papers that mentioned: 629
Very Likely Science (75)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
Very Likely Science (75)
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
Very Likely Science (100)
cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
Very Likely Science (85)
cran: HMM
Hidden Markov Models
Papers that mentioned: 577
Very Likely Science (75)
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
Very Likely Science (93)
cran: raster
Geographic Data Analysis and Modeling
Papers that mentioned: 561
Very Likely Science (85)
cran: SPOT
Sequential Parameter Optimization Toolbox
Papers that mentioned: 551
Very Likely Science (85)
cran: AR
Another Look at the Acceptance-Rejection Method
Papers that mentioned: 533
Very Likely Science (75)
cran: BET
Binary Expansion Testing
Papers that mentioned: 514
Very Likely Science (83)
cran: STAT
Interactive Document for Working with Basic Statistical Analysis
Papers that mentioned: 508
Very Likely Science (93)
cran: IMPACT
The Impact of Items
Papers that mentioned: 502
Very Likely Science (75)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
cran: survivalROC
Time-Dependent ROC Curve Estimation from Censored Survival Data
Papers that mentioned: 479
Very Likely Science (75)
cran: MCMCglmm
MCMC Generalised Linear Mixed Models
Papers that mentioned: 477
Very Likely Science (83)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
cran: mice
Multivariate Imputation by Chained Equations
Papers that mentioned: 455
Very Likely Science (100)
cran: uclust
Clustering and Classification Inference with U-Statistics
Papers that mentioned: 454
Very Likely Science (85)
cran: Spectrum
Fast Adaptive Spectral Clustering for Single and Multi-View Data
Papers that mentioned: 450
Very Likely Science (75)
cran: CCA
Canonical Correlation Analysis
Papers that mentioned: 449
Very Likely Science (93)
cran: pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
Papers that mentioned: 442
Very Likely Science (75)
cran: rpart
Recursive Partitioning and Regression Trees
Papers that mentioned: 431
Very Likely Science (100)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Papers that mentioned: 419
Very Likely Science (85)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
Very Likely Science (85)
cran: word2vec
Distributed Representations of Words
Papers that mentioned: 413
Very Likely Science (90)
cran: SKAT
SNP-Set (Sequence) Kernel Association Test
Papers that mentioned: 407
Very Likely Science (83)
cran: GE
General Equilibrium Modeling
Papers that mentioned: 401
Very Likely Science (85)
cran: plink
IRT Separate Calibration Linking Methods
Papers that mentioned: 399
Very Likely Science (100)
cran: ANTs
Animal Network Toolkit Software
Papers that mentioned: 393
Very Likely Science (85)
cran: BEST
Bayesian Estimation Supersedes the t-Test
Papers that mentioned: 382
Very Likely Science (85)
cran: glmmTMB
Generalized Linear Mixed Models using Template Model Builder
Papers that mentioned: 373
Very Likely Science (100)
cran: TESS
Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events
Papers that mentioned: 359
Very Likely Science (85)
cran: MatchIt
Nonparametric Preprocessing for Parametric Causal Inference
Papers that mentioned: 358
Very Likely Science (100)
cran: Mercator
Clustering and Visualizing Distance Matrices
Papers that mentioned: 347
Very Likely Science (75)
cran: rgdal
Bindings for the 'Geospatial' Data Abstraction Library
Papers that mentioned: 328
Very Likely Science (75)
cran: ES
Edge Selection
Papers that mentioned: 323
Very Likely Science (75)
cran: MCS
Model Confidence Set Procedure
Papers that mentioned: 323
Very Likely Science (75)
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
Very Likely Science (100)
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
Very Likely Science (100)
cran: brms
Bayesian Regression Models using 'Stan'
Papers that mentioned: 316
Very Likely Science (100)
cran: MM
The Multiplicative Multinomial Distribution
Papers that mentioned: 314
Very Likely Science (75)
cran: pwr
Basic Functions for Power Analysis
Papers that mentioned: 312
Very Likely Science (85)