Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: randomForest
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/randomForest
Breiman and Cutler's Random Forests for Classification and
Regression
59 versions
Latest release: over 2 years ago
351 dependent packages
92,890 downloads last month
Papers Mentioning randomForest 1,447
10.1084/jem.20210915
Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosisCited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Software Mentions: 27
Published: about 3 years ago
10.3389/fcell.2020.577125
Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to ImmunotherapyCited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: almost 4 years ago
10.3390/ijms21062114
Computational Models Using Multiple Machine Learning Algorithms for Predicting Drug Hepatotoxicity with the DILIrank DatasetCited by: 22
Author(s): Robert Ancuceanu, Marilena Viorica Hovaneț, Adriana Iuliana Anghel, Florentina Furtunescu, Monica Neagu, Carolina Constantin, Mihaela Dinu
Software Mentions: 24
Published: over 4 years ago
10.1093/gigascience/giaa026
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular dataCited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago
10.1186/s13071-021-04851-x
Data-driven and interpretable machine-learning modeling to explore the fine-scale environmental determinants of malaria vectors biting rates in rural Burkina FasoCited by: 9
Author(s): Paul Taconet, Angélique Porciani, Dieudonné Diloma Soma, Karine Mouline, Frédéric Simard, Alphonsine A. Koffi, Cédric Pennetier, Roch K. Dabiré, Morgan Mangeas, Nicolas Moiroux
Software Mentions: 21
Published: over 3 years ago
10.1186/s13059-020-02100-5
Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing dataCited by: 56
Author(s): Nikolaus Fortelny, Christoph Bock
Software Mentions: 20
Published: over 4 years ago
10.3390/plants10020247
Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm BanksCited by: 5
Author(s): Juan Camilo Henao-Rojas, María Gladis Rosero-Alpala, Carolina Ortiz-Muñoz, Carlos Enrique Velásquez-Arroyo, William A. León-Rueda, Joaquín Guillermo Ramírez‐Gil
Software Mentions: 19
Published: almost 4 years ago
10.1111/eva.13237
A machine learning approach to integrating genetic and ecological data in tsetse flies ( <i>Glossina pallidipes</i> ) for spatially explicit vector control planningCited by: 5
Author(s): Anusha P Bishop, Giuseppe Amatulli, Chaz Hyseni, Evlyn Pless, Rosemary Bateta, Winnie A. Okeyo, Paul O. Mireji, Sylvance Okoth, Imna Malele, Grace Murilla, Serap Aksoy, Adalgisa Caccone, Norah P. Saarman
Software Mentions: 18
Published: over 3 years ago
10.1128/mBio.01054-19
Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial SignaturesCited by: 28
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Simon Lax
Software Mentions: 18
Published: about 5 years ago
10.18632/aging.103499
Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissueCited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Software Mentions: 18
Published: over 4 years ago
10.3390/ijms21228837
Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in CancerCited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: almost 4 years ago
10.1093/gigascience/giaa010
Interpretable and accurate prediction models for metagenomics dataCited by: 29
Author(s): Edi Prifti, Yann Chevaleyre, Blaise Hanczar, Eugeni Belda, Antoine Danchin, Karine Clément, Jean-Daniel Zucker
Software Mentions: 18
Published: over 4 years ago
10.1093/gigascience/giz028
Rice Galaxy: an open resource for plant scienceCited by: 13
Author(s): Venice Margarette Juanillas, Alexis Dereeper, Nicolas Beaume, Gaëtan Droc, Joshua Gregor A. Dizon, J. Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay R. Triplett, Jillian M. Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E. Leach, Manuel Ruiz, Michael J. Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil Mauleon
Software Mentions: 18
Published: over 5 years ago
10.1038/s41598-020-80340-y
Universal principles underlying segmental structures in parrot song and human speechCited by: 6
Author(s): Dan C. Mann, W. Tecumseh Fitch, Hsiao‐Wei Tu, Marisa Hoeschele
Software Mentions: 17
Published: almost 4 years ago
10.7717/peerj.9539
The importance of open science for biological assessment of aquatic environmentsCited by: 15
Author(s): Marcus W. Beck, Casey C. O’Hara, Julia S. Stewart Lowndes, Raphael D. Mazor, Susanna Theroux, David J. Gillett, Belize Lane, Gregory Gearheart
Software Mentions: 17
Published: over 4 years ago
10.3389/fvets.2021.620327
Detection of Mycobacterium avium ssp. paratuberculosis in Cultures From Fecal and Tissue Samples Using VOC Analysis and Machine Learning ToolsCited by: 6
Author(s): Philipp Vitense, Elisa Kasbohm, Anne Klassen, Peter Gierschner, Phillip Trefz, M. Weber, Wolfram Miekisch, Jochen K. Schubert, Petra Möbius, Petra Reinhold, Volkmar Liebscher, Heike Köhler
Software Mentions: 17
Published: over 3 years ago
10.1371/journal.pntd.0007969
Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infectionCited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: over 4 years ago
10.1186/s13059-020-02020-4
Lifestyle and the presence of helminths is associated with gut microbiome composition in CamerooniansCited by: 43
Author(s): Meagan A Rubel, Arwa Abbas, Louis J. Taylor, Andrew Jesse Connell, Ceylan Tanes, Kyle Bittinger, Valantine Ngum Ndze, Julius Y. Fonsah, Eric Ngwang, André Essiane, Charles Fokunang, Alfred K. Njamnshi, Frederic D. Bushman, Sarah A. Tishkoff
Software Mentions: 16
Published: over 4 years ago
10.1186/s12935-020-01571-7
RETRACTED ARTICLE: Aging-related tumor associated fibroblasts changes could worsen the prognosis of GBM patientsCited by: 7
Author(s): Hongwang Song, Xiaojun Fu, Chenxing Wu, Shouwei Li
Software Mentions: 16
Published: about 4 years ago
10.1186/1471-2105-9-439
CMA – a comprehensive Bioconductor package for supervised classification with high dimensional dataCited by: 90
Author(s): Martin Slawski, Martin Däumer, Anne‐Laure Boulesteix
Software Mentions: 16
Published: about 16 years ago
10.3389/fimmu.2017.00445
Integration of Immune Cell Populations, mRNA-Seq, and CpG Methylation to Better Predict Humoral Immunity to Influenza Vaccination: Dependence of mRNA-Seq/CpG Methylation on Immune Cell PopulationsCited by: 15
Author(s): Michael T. Zimmermann, Richard B. Kennedy, Diane E. Grill, Ann L. Oberg, Krista M. Goergen, Inna G. Ovsyannikova, Iana H. Haralambieva, Gregory A. Poland
Software Mentions: 16
Published: over 7 years ago
10.7717/peerj.11177
Predicting migration routes for three species of migratory bats using species distribution modelsCited by: 13
Author(s): Jamin G. Wieringa, Bryan C. Carstens, H. Lisle Gibbs
Software Mentions: 16
Published: over 3 years ago
10.1186/1472-6947-13-126
Evaluation of prediction models for the staging of prostate cancerCited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: almost 11 years ago
10.1371/journal.pone.0018850
Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and PrognosisCited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago
10.1098/rsos.191609
Spatial heterogeneity of the shorebird gastrointestinal microbiomeCited by: 17
Author(s): Kirsten Grond, Hannah Guilani, Sarah M. Hird
Software Mentions: 15
Published: almost 5 years ago
10.1186/s12859-015-0719-5
mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristicsCited by: 3
Author(s): Αλέξανδρος Σακελλαρίου, George M. Spyrou
Software Mentions: 15
Published: about 9 years ago
10.1371/journal.pgen.1009538
Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiaeCited by: 16
Author(s): Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, Allan Jacobson
Software Mentions: 15
Published: over 3 years ago
10.3389/fneur.2019.01366
Prediction of Early TBI Mortality Using a Machine Learning Approach in a LMIC PopulationCited by: 39
Author(s): Robson Luís Oliveira de Amorim, Louise Makarem Oliveira, Luis Marcelo Malbouisson, Márcia Mitie Nagumo, Marcela Simoes, Leandro Miranda, Edson Bor‐Seng‐Shu, André Beer‐Furlan, Almir Ferreira de Andrade, Andrés M. Rubiano, Manoel Jacobsen Teixeira, Angelos G. Kolias, Wellingson Silva Paiva
Software Mentions: 15
Published: almost 5 years ago
10.3389/fcell.2021.642724
Identification of Stemness-Related Genes for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma by Integrated Bioinformatics AnalysisCited by: 5
Author(s): Hongjun Guo, Siqiao Wang, Min Kyung Ju, Penghui Yan, Weiwei Sun, Zhenyu Li, Siyu Wu, Ruoyi Lin, Shuyuan Xian, Daoke Yang, Jun Wang, Zongqiang Huang
Software Mentions: 15
Published: over 3 years ago
10.21105/joss.03073
mikropml: User-Friendly R Package for Supervised Machine Learning PipelinesCited by: 22
Author(s): Begüm D. Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
Software Mentions: 15
Published: over 3 years ago
10.1371/journal.pone.0243467
Predicting self-harm within six months after initial presentation to youth mental health services: A machine learning studyCited by: 16
Author(s): Frank Iorfino, Nicholas Ho, Joanne S. Carpenter, Shane Cross, Tracey A Davenport, Daniel F. Hermens, Hannah Yee, Alissa Nichles, Natalia Zmicerevska, Adam J. Guastella, Elizabeth Scott, Ian B. Hickie
Software Mentions: 14
Published: almost 4 years ago
10.3389/fonc.2020.573295
Differential Expression Analysis Revealing CLCA1 to Be a Prognostic and Diagnostic Biomarker for Colorectal CancerCited by: 11
Author(s): Fang-Ze Wei, Shiwen Mei, Zhijie Wang, Jianan Chen, Huan Shen, Fen Zhao, Juan Li, Zheng Liu, Qian Liu
Software Mentions: 14
Published: about 4 years ago
10.3389/fgene.2021.702072
Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic CancerCited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: about 3 years ago
10.1371/journal.pcbi.1005158
Machine Learning for Characterization of Insect Vector FeedingCited by: 25
Author(s): Denis S. Willett, Justin George, Nora S. Willett, Lukasz L. Stelinski, Stephen L. Lapointe
Software Mentions: 14
Published: almost 8 years ago
10.1186/s12920-019-0578-4
Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patientsCited by: 21
Author(s): Petr V. Nazarov, Anke Wienecke-Baldacchino, Andreï Zinovyev, Urszula Czerwińska, Arnaud Muller, Dorothée Nashan, Gunnar Dittmar, Francisco Azuaje, Stephanie Kreis
Software Mentions: 14
Published: about 5 years ago
10.1186/s12859-016-0971-3
GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression dataCited by: 20
Author(s): Kévin Rue-Albrecht, Paul A. McGettigan, Belinda Hernández, Nicolas C. Nalpas, David A. Magee, Andrew Parnell, Stephen V. Gordon, David E. MacHugh
Software Mentions: 14
Published: over 8 years ago
10.3389/fcell.2020.592490
Transcriptome Sequencing Reveals Potential Roles of ICOS in Primary Sjögren’s SyndromeCited by: 19
Author(s): Jing Luo, Xin Liao, Lihe Zhang, Xin Xu, Senhong Ying, Mengjiao Yu, Lixia Zhu, Suxian Lin, Xiaobing Wang
Software Mentions: 14
Published: almost 4 years ago
10.1111/jcmm.15705
Collagen Type III Alpha 1 chain regulated by GATA‐Binding Protein 6 affects Type II IFN response and propanoate metabolism in the recurrence of lower grade gliomaCited by: 18
Author(s): Runzhi Huang, Zhenyu Li, Xiaolong Zhu, Penghui Yan, Dianwen Song, Huabin Yin, Peng Hu, Ruoyi Lin, Shengyu Wu, Tong Meng, Jie Zhang, Zongqiang Huang
Software Mentions: 14
Published: about 4 years ago
10.7717/peerj.5518
Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variablesCited by: 419
Author(s): Tomislav Hengl, Madlene Nussbaum, Marvin N. Wright, G.B.M. Heuvelink, Benedikt Gräler
Software Mentions: 13
Published: about 6 years ago
10.1371/journal.pone.0135784
Comparison of Nine Statistical Model Based Warfarin Pharmacogenetic Dosing Algorithms Using the Racially Diverse International Warfarin Pharmacogenetic Consortium Cohort DatabaseCited by: 38
Author(s): Rong Liu, Xi Li, Wei Zhang, Hong‐Hao Zhou
Software Mentions: 13
Published: about 9 years ago
10.1186/s40168-020-00861-6
Reservoirs of antimicrobial resistance genes in retail raw milkCited by: 41
Author(s): Jinxin Liu, Yongxu Zhu, Michele Jay-Russell, Danielle G. Lemay, David A. Mills
Software Mentions: 13
Published: over 4 years ago
10.1007/s10875-020-00908-1
Targeted Proteomics Reveals Inflammatory Pathways that Classify Immune Dysregulation in Common Variable ImmunodeficiencyCited by: 13
Author(s): Roos-Marijn Berbers, Julia Drylewicz, Pauline M. Ellerbroek, Joris M. van Montfrans, Virgil A. S. H. Dalm, P. Martin van Hagen, Baerbel Keller, Klaus Warnatz, Annick van de Ven, J.M. van Laar, Stefan Nierkens, Helen L. Leavis
Software Mentions: 13
Published: almost 4 years ago
10.3390/ijms21010019
Use of QSAR Global Models and Molecular Docking for Developing New Inhibitors of c-src Tyrosine KinaseCited by: 8
Author(s): Robert Ancuceanu, Bogdan Ionel Tamba, C. Stoicescu, Mihaela Dinu
Software Mentions: 13
Published: almost 5 years ago
10.7554/eLife.50087
Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycleCited by: 58
Author(s): Elias T Friman, Cédric Deluz, Antonio C. A. Meireles-Filho, Subashika Govindan, Vincent Gardeux, Bart Deplancke, David M. Suter
Software Mentions: 13
Published: almost 5 years ago
10.1038/s41598-021-90901-4
Characteristics of preoperative steroid profiles and glucose metabolism in patients with primary aldosteronism developing adrenal insufficiency after adrenalectomyCited by: 3
Author(s): Xiao Wang, Daniel A. Heinrich, Sonja Kunz, Nina Heger, Lisa Sturm, Olaf Uhl, Felix Beuschlein, Martín Reincke, Martin Bidlingmaier
Software Mentions: 13
Published: over 3 years ago
10.1371/journal.pone.0253546
Tone and genes: New cross-linguistic data and methods support the weak negative effect of the “derived” allele of ASPM on tone, but not of MicrocephalinCited by: 1
Author(s): Dan Dediu
Software Mentions: 13
Published: over 3 years ago
10.3389/fcimb.2021.688256
Machine Learning Uses Chemo-Transcriptomic Profiles to Stratify Antimalarial Compounds With Similar Mode of ActionCited by: 1
Author(s): Ashleigh van Heerden, Roelof van Wyk, Lyn-Marié Birkholtz
Software Mentions: 13
Published: over 3 years ago
10.1371/journal.pone.0212669
Batch adjustment by reference alignment (BARA): Improved prediction performance in biological test sets with batch effectsCited by: 3
Author(s): Robin Gradin, Malin Lindstedt, Henrik J. Johansson
Software Mentions: 13
Published: over 5 years ago
10.3389/fgene.2020.00620
An Analysis Regarding the Association Between the ISLR Gene and Gastric CarcinogenesisCited by: 13
Author(s): Shu Li, Wei Zhao, Manyi Sun
Software Mentions: 13
Published: over 4 years ago
10.1038/s41396-018-0251-5
Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammalsCited by: 56
Author(s): Amanda C. Perofsky, Rebecca J. Lewis, Lauren Ancel Meyers
Software Mentions: 12
Published: about 6 years ago
10.1111/gcb.15637
Impacts of climate change on aquatic insects in temperate alpine regions: Complementary modeling approaches applied to Swiss riversCited by: 6
Author(s): Pablo Timoner, Marc Fasel, Seyed Saeid Ashraf Vaghefi, Pierre Marle, Emmanuel Castella, Frédéric Moser, Anthony Lehmann
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.10849
modelBuildR: an R package for model building and feature selection with erroneous classificationsCited by: 3
Author(s): Maximilian Knoll, Jennifer Furkel, Jürgen Debus, Amir Abdollahi
Software Mentions: 12
Published: over 3 years ago
10.3389/fmicb.2020.01116
Crop Management Impacts the Soybean (Glycine max) MicrobiomeCited by: 41
Author(s): Reid Longley, Zachary A Noel, Gian Maria Niccolò Benucci, Martin I. Chilvers, Frances Trail, Gregory Bonito
Software Mentions: 12
Published: over 4 years ago
10.1186/s13071-018-2920-7
Spatial distribution modelling of Culicoides (Diptera: Ceratopogonidae) biting midges, potential vectors of African horse sickness and bluetongue viruses in SenegalCited by: 15
Author(s): Maryam Diarra, Moussa Fall, Assane Guèye Fall, Aliou Diop, Renaud Lancelot, Momar Talla Seck, Ignace Rakotoarivony, Xavier Allène, Jérémy Bouyer, Hélène Guis
Software Mentions: 12
Published: over 6 years ago
10.1186/s12885-021-08442-y
Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patientsCited by: 9
Author(s): Xingjie Gao, Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Yuanyuan Ren, Chao Su, Shaoyuan Wu, Zhi Yao, Jie Yang
Software Mentions: 12
Published: over 3 years ago
10.1186/s12911-017-0500-y
Predicting two-year survival versus non-survival after first myocardial infarction using machine learning and Swedish national register dataCited by: 53
Author(s): John Wallert, Mattia Tomasoni, Guy Madison, Claes Held
Software Mentions: 12
Published: over 7 years ago
10.3390/jcm7100322
Derivation and Validation of Machine Learning Approaches to Predict Acute Kidney Injury after Cardiac SurgeryCited by: 100
Author(s): Hyung Chul Lee, Hyun Kyu Yoon, Karam Nam, Youn Joung Cho, Tae Kyoung Kim, Won Ho Kim, Jae Hyon Bahk
Software Mentions: 12
Published: about 6 years ago
10.1186/s12967-017-1285-6
In silico prediction of novel therapeutic targets using gene–disease association dataCited by: 79
Author(s): Enrico Ferrero, Ian Dunham, Philippe Sanséau
Software Mentions: 12
Published: about 7 years ago
10.1371/journal.pone.0207491
Feature selection and prediction of treatment failure in tuberculosisCited by: 30
Author(s): Christopher Martin Sauer, David Sasson, Kenneth E. Paik, Ned McCague, Leo Anthony Celi, Iván Sánchez Fernández, Ben Illigens
Software Mentions: 12
Published: almost 6 years ago
10.1371/journal.pone.0231500
Propensity score adjustment using machine learning classification algorithms to control selection bias in online surveysCited by: 23
Author(s): Ramón Ferri‐García, María del Mar Rueda
Software Mentions: 12
Published: over 4 years ago
10.1186/s12920-017-0303-0
Classifying cancer genome aberrations by their mutually exclusive effects on transcriptionCited by: 8
Author(s): Jonathan Dayton, Stephen R. Piccolo
Software Mentions: 12
Published: almost 7 years ago
10.1371/journal.pone.0204123
Prediction of early breast cancer patient survival using ensembles of hypoxia signaturesCited by: 8
Author(s): Inna Y. Gong, Natalie S. Fox, Vincent Huang, Paul C. Boutros
Software Mentions: 12
Published: about 6 years ago
10.3390/metabo7020030
Evaluation of Classifier Performance for Multiclass Phenotype Discrimination in Untargeted MetabolomicsCited by: 33
Author(s): Patrick J. Trainor, Andrew P. DeFilippis, N. Shesh
Software Mentions: 12
Published: over 7 years ago
10.1186/s40168-020-00805-0
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seedCited by: 80
Author(s): Hyun Kim, Kiseok Keith Lee, Jongbum Jeon, William Harris, Yong-Hwan Lee
Software Mentions: 11
Published: over 4 years ago
10.1128/mSphere.00481-19
Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial CommunitiesCited by: 15
Author(s): Ryan B. Ghannam, Laura G. Schaerer, Timothy Butler, Stephen M. Techtmann
Software Mentions: 11
Published: over 4 years ago
10.1038/s41598-019-46850-0
Deep Learning using Convolutional LSTM estimates Biological Age from Physical ActivityCited by: 56
Author(s): Syed Ashiqur Rahman, Donald A. Adjeroh
Software Mentions: 11
Published: about 5 years ago
10.3390/diagnostics11081517
Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical CancerCited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: about 3 years ago
10.1038/srep42192
Application of Machine-Learning Models to Predict Tacrolimus Stable Dose in Renal Transplant RecipientsCited by: 86
Author(s): Jie Tang, Rong Liu, Yueli Zhang, Mou-Ze Liu, HU Yong-fang, Minghai Shao, Lan Zhu, Hua‐Wen Xin, Feng Gao, Wenjun Shang, Xiang‐Gao Meng, Lirong Zhang, Yingzi Ming, Wei Zhang
Software Mentions: 11
Published: over 7 years ago
10.3390/jcm10184245
Machine-Learning Points at Endoscopic, Quality of Life, and Olfactory Parameters as Outcome Criteria for Endoscopic Paranasal Sinus Surgery in Chronic RhinosinusitisCited by: 4
Author(s): Jörn Lötsch, Constantin A. Hintschich, Petros Petridis, Jürgen Pade, Thomas Hummel
Software Mentions: 11
Published: about 3 years ago
10.1016/j.cell.2018.08.067
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel DiseaseCited by: 396
Author(s): James Kinchen, Hannah H. Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar, Eshita Sharma, Quin F. Wills, Rory Bowden, Felix Clemens Richter, David Ahern, Kamal D. Puri, Jill Hénault, François G. Gervais, Hashem Koohy, Alison Simmons
Software Mentions: 11
Published: about 6 years ago
10.1371/journal.pone.0256694
Factors contributing to farm-level productivity and household income generation in coastal Bangladesh’s rice-based farming systemsCited by: 18
Author(s): Shah Al Emran, Timothy J. Krupnik, Sreejith Aravindakshan, Virender Kumar, Cameron M. Pittelkow
Software Mentions: 11
Published: about 3 years ago
10.3390/cancers12123800
Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and Its Application in Early DiagnosisCited by: 14
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 11
Published: almost 4 years ago
10.1371/journal.pone.0183626
Species distribution models: A comparison of statistical approaches for livestock and disease epidemicsCited by: 21
Author(s): Tracey Hollings, Andrew P. Robinson, Mary van Andel, Chris Jewell, Mark A. Burgman
Software Mentions: 11
Published: about 7 years ago
10.3389/fmicb.2019.01770
Gut Microbiota as an Objective Measurement for Auxiliary Diagnosis of Insomnia DisorderCited by: 55
Author(s): Bingdong Liu, Win Lin, Shujie Chen, Ting Xiang, Yifan Yang, Yulong Yin, Guohuan Xu, Zhihong Liu, Li Liu, Jiyang Pan, Liwei Xie
Software Mentions: 11
Published: about 5 years ago
10.1186/s12859-020-03786-x
IP4M: an integrated platform for mass spectrometry-based metabolomics data miningCited by: 32
Author(s): Dandan Liang, Quan Liu, Kejun Zhou, Jia Wang, Guoxiang Xie, Tianlu Chen
Software Mentions: 11
Published: about 4 years ago
10.1371/journal.pone.0242728
Video kills the sentiment—Exploring fans’ reception of the video assistant referee in the English premier league using Twitter dataCited by: 10
Author(s): Otto Kolbinger, Melanie Knopp
Software Mentions: 11
Published: almost 4 years ago
10.1186/s12859-017-1579-y
metaX: a flexible and comprehensive software for processing metabolomics dataCited by: 402
Author(s): Bo Wen, Zhanlong Mei, Chunwei Zeng, Siqi Liu
Software Mentions: 11
Published: over 7 years ago
10.1017/S003329171800315X
A machine learning ensemble to predict treatment outcomes following an Internet intervention for depressionCited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: almost 6 years ago
10.3389/fgene.2021.625145
Identification of Tumor Microenvironment-Related Prognostic Biomarkers for Ovarian Serous Cancer 3-Year Mortality Using Targeted Maximum Likelihood Estimation: A TCGA Data Mining StudyCited by: 2
Author(s): Lu Wang, Xiaoru Sun, Chuandi Jin, Yue Fan, Fuzhong Xue
Software Mentions: 11
Published: over 3 years ago
10.1186/s12859-018-2105-6
Building protein-protein interaction networks for Leishmania species through protein structural informationCited by: 17
Author(s): Crhisllane Rafaele dos Santos Vasconcelos, Túlio de Lima Campos, Antônio Mauro Rezende
Software Mentions: 11
Published: over 6 years ago
10.1186/s12859-018-2264-5
Random forest versus logistic regression: a large-scale benchmark experimentCited by: 396
Author(s): Raphäel Couronné, Philipp Probst, Anne‐Laure Boulesteix
Software Mentions: 11
Published: over 6 years ago
10.3389/fphys.2021.714195
Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine LearningCited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: about 3 years ago
10.1038/s41598-018-33986-8
Identification of Novel Genes in Human Airway Epithelial Cells associated with Chronic Obstructive Pulmonary Disease (COPD) using Machine-Based Learning AlgorithmsCited by: 24
Author(s): Shayan Mostafaei, Anoshirvan Kazemnejad, Sadegh Azimzadeh Jamalkandi, Soroush Amirhashchi, Seamas C. Donnelly, Michelle E. Armstrong, Mohammad Doroudian
Software Mentions: 11
Published: about 6 years ago
10.1371/journal.pone.0127816
HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to MaravirocCited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: over 9 years ago
10.18632/aging.103517
Identifying CpG methylation signature as a promising biomarker for recurrence and immunotherapy in non–small-cell lung carcinomaCited by: 13
Author(s): Ruihan Luo, Song Jing, Xiao Xiao, Zhengbo Xie, Zhuochen Zhao, Wanfeng Zhang, Shiqi Miao, Yongyao Tang, Longke Ran
Software Mentions: 10
Published: over 4 years ago
10.1371/journal.pone.0172705
Modelling the effects of environmental conditions on the acoustic occurrence and behaviour of Antarctic blue whalesCited by: 21
Author(s): Fannie W. Shabangu, Dawit Yemane, Kathleen M. Stafford, Paul Ensor, Ken P. Findlay
Software Mentions: 10
Published: over 7 years ago
10.18632/aging.202174
Periodontitis in elderly patients with type 2 diabetes mellitus: impact on gut microbiota and systemic inflammationCited by: 18
Author(s): Jinyou Li, Haifeng Lü, Hengchao Wu, Shunmei Huang, Lufang Chen, Qifeng Gui, Wenjing Zhou, Yichen Yang, Yue Wu, Hua Zhang, Qin Zhang, Yunmei Yang
Software Mentions: 10
Published: almost 4 years ago
10.1186/s12864-015-2250-5
Leveraging global gene expression patterns to predict expression of unmeasured genesCited by: 3
Author(s): James Rudd, René A. Zelaya, Eugene Demidenko, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 10
Published: almost 9 years ago
10.1038/s41598-020-60747-3
High-Throughput Screening to Predict Chemical-Assay InterferenceCited by: 25
Author(s): Alexandre Borrel, Ruili Huang, Srilatha Sakamuru, Menghang Xia, Anton Simeonov, Kamel Mansouri, Keith A. Houck, Richard S. Judson, Nicole Kleinstreuer
Software Mentions: 10
Published: over 4 years ago
10.1002/ece3.5599
Linking pollen foraging of megachilid bees to their nest bacterial microbiotaCited by: 29
Author(s): Anna Voulgari‐Kokota, Markus J. Ankenbrand, Gudrun Grimmer, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 10
Published: about 5 years ago
10.1155/2020/6539398
Distinguishing Kawasaki Disease from Febrile Infectious Disease Using Gene Pair SignaturesCited by: 1
Author(s): Jiayong Zhong, Qingsheng Huang, Yanfei Wang, Huan Gao, Hongling Jia, Jun Fan, Huiying Liang
Software Mentions: 10
Published: over 4 years ago
10.1038/s41598-020-66650-1
Predicting dengue importation into Europe, using machine learning and model-agnostic methodsCited by: 17
Author(s): Donald Salami, Carla Sousa, Maria do Rosário Oliveira Martins, César Capinha
Software Mentions: 10
Published: over 4 years ago
10.3389/fmicb.2019.01702
Experimental Inoculation of Coral Recruits With Marine Bacteria Indicates Scope for Microbiome Manipulation in Acropora tenuis and Platygyra daedaleaCited by: 47
Author(s): Katarina Damjanovic, Madeleine Jh van Oppen, Patricia Menéndez, Linda L. Blackall
Software Mentions: 10
Published: over 5 years ago
10.1186/s13040-021-00235-0
Data analytics and clinical feature ranking of medical records of patients with sepsisCited by: 11
Author(s): Davide Chicco, Luca Oneto
Software Mentions: 10
Published: over 3 years ago
10.1186/s12859-017-1770-1
CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element predictionCited by: 24
Author(s): Carlos Guzmán, Iván D’Orso
Software Mentions: 10
Published: about 7 years ago
10.1186/s12920-019-0628-y
A deep neural network approach to predicting clinical outcomes of neuroblastoma patientsCited by: 14
Author(s): Léon-Charles Tranchevent, Francisco Azuaje, Jagath C. Rajapakse
Software Mentions: 10
Published: almost 5 years ago
10.1186/s13062-018-0214-9
Predicting clinical outcome of neuroblastoma patients using an integrative network-based approachCited by: 13
Author(s): Léon-Charles Tranchevent, Petr V. Nazarov, Tony Kaoma, Georges Pierre Schmartz, Arnaud Muller, Sang Yoon Kim, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 10
Published: almost 7 years ago
10.1371/journal.pone.0215142
Mathematical modeling for the prediction of cerebral white matter lesions based on clinical examination dataCited by: 7
Author(s): Yuya Shinkawa, Takashi Yoshida, Yohei Onaka, Makoto Ichinose, Kazuo Ishii
Software Mentions: 10
Published: over 5 years ago
10.1038/s41598-018-33077-8
Machine-learning based lipid mediator serum concentration patterns allow identification of multiple sclerosis patients with high accuracyCited by: 41
Author(s): Jörn Lötsch, Susanne Schiffmann, Katja Schmitz, R. Brunkhorst, F. Javier Lerch, Nerea Ferreirós, Sabine Wicker, Irmgard Tegeder, Gerd Geißlinger, Alfred Ultsch
Software Mentions: 10
Published: about 6 years ago
10.1371/journal.pone.0095753
A Comparison of Supervised Machine Learning Algorithms and Feature Vectors for MS Lesion Segmentation Using Multimodal Structural MRICited by: 41
Author(s): Elizabeth Sweeney, Joshua T. Vogelstein, Jennifer L. Cuzzocreo, Peter A. Calabresi, Daniel S. Reich, Ciprian M. Crainiceanu, Russell T. Shinohara
Software Mentions: 10
Published: over 10 years ago