Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2020.01116

https://doi.org/10.3389/fmicb.2020.01116

Crop Management Impacts the Soybean (Glycine max) Microbiome

Cited by: 41
Author(s): Reid Longley, Zachary A Noel, Gian Maria Niccolò Benucci, Martin I. Chilvers, Frances Trail, Gregory Bonito
Published: over 4 years ago

Software Mentions 12

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: BiodiversityR
Package for Community Ecology and Suitability Analysis
Papers that mentioned: 115
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: indicspecies
Relationship Between Species and Groups of Sites
Papers that mentioned: 218
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: rfUtilities
Random Forests Model Selection and Performance Evaluation
Papers that mentioned: 21
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105