cran: BiodiversityR | Projects | Ecosyste.ms: Papers

10.1080/19490976.2021.1940792

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Cited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago

10.3390/microorganisms9061167

Diversity and Oil Degradation Potential of Culturable Microbes Isolated from Chronically Contaminated Soils in Trinidad
Cited by: 10
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 14
Published: over 3 years ago

10.3389/fmicb.2020.01116

Crop Management Impacts the Soybean (Glycine max) Microbiome
Cited by: 41
Author(s): Reid Longley, Zachary A Noel, Gian Maria Niccolò Benucci, Martin I. Chilvers, Frances Trail, Gregory Bonito
Software Mentions: 12
Published: over 4 years ago

10.7717/peerj.11534

AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Cited by: 5
Author(s): Roeland Kindt
Software Mentions: 12
Published: over 3 years ago

10.3390/microorganisms9071526

Exploring the Individual Bacterial Microbiota of Questing Ixodes ricinus Nymphs
Cited by: 2
Author(s): Aurélien Alafaci, Alexandre Crépin, Sabine Beaubert, Jean‐Marc Berjeaud, Vincent Delafont, Julien Verdon
Software Mentions: 12
Published: over 3 years ago

10.1016/j.mex.2018.07.003

A practical method to control spatiotemporal confounding in environmental impact studies
Cited by: 4
Author(s): Rezvan Hatami
Software Mentions: 11
Published: almost 7 years ago

10.3389/fmicb.2018.02301

Aquatic Bacterial Communities Associated With Land Use and Environmental Factors in Agricultural Landscapes Using a Metabarcoding Approach
Cited by: 38
Author(s): Wen Chen, Graham Wilkes, Izhar U. H. Khan, Katarina Pintar, Joseph P. Thomas, C. André Lévesque, Julie T. Chapados, Edward Topp, David R. Lapen
Software Mentions: 11
Published: about 6 years ago

10.1038/s41598-019-45491-7

The future of coffee and cocoa agroforestry in a warmer Mesoamerica
Cited by: 58
Author(s): Kauê de Sousa, Maarten van Zonneveld, Milena Holmgren, Roeland Kindt, Jenny C. Ordóñez
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0208780

Clusters of high abundance of plants detected from local indicators of spatial association (LISA) in a semi-deciduous tropical forest
Cited by: 13
Author(s): José Ramón Martínez Batlle, Yntze van der Hoek
Software Mentions: 10
Published: almost 6 years ago

10.1038/s41598-020-69828-9

Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae)
Cited by: 0
Author(s): Jonas Frankel-Bricker
Software Mentions: 8
Published: over 4 years ago

10.1128/AEM.02601-17

Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada
Cited by: 23
Author(s): Wen Chen, Sarah Hambleton, Keith A. Seifert, Odile Carisse, Moussa S. Diarra, R. D. Peters, Christine Lowe, Julie T. Chapados, C. André Lévesque
Software Mentions: 8
Published: over 6 years ago

10.3389/fimmu.2018.00462

Analyzing Immunoglobulin Repertoires
Cited by: 77
Author(s): Neha Chaudhary, Duane R. Wesemann
Software Mentions: 8
Published: over 6 years ago

10.3390/insects11120828

Local and Landscape Effects on Carrion-Associated Rove Beetle (Coleoptera: Staphylinidae) Communities in German Forests
Cited by: 7
Author(s): Sandra Weithmann, Jonas Kuppler, Gregor Degasperi, Sandra Steiger, Manfred Ayasse, Christian von Hoermann
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmicb.2018.00674

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop
Cited by: 38
Author(s): Késia Silva Lourenço, Noriko A. Cassman, Agata Pijl, Johannes A. van Veen, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 6
Published: over 6 years ago

10.1186/s40168-019-0687-5

Evolution of the gut microbiome following acute HIV-1 infection
Cited by: 61
Author(s): Muntsa Rocafort, Marc Noguera‐Julian, Javier Rivera, Lucía Pastor, Yolanda Guillén, Jost Langhorst, Mariona Parera, Inácio Mandomando, Jorge Carrillo, Víctor Urrea, C. Rodríguez, María Casadellà, M. Luz Calle, Bonaventura Clotet, Julià Blanco, Denise Naniche, Roger Paredes
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0006462

Community Analysis of Chronic Wound Bacteria Using 16S rRNA Gene-Based Pyrosequencing: Impact of Diabetes and Antibiotics on Chronic Wound Microbiota
Cited by: 193
Author(s): Lance B. Price, Cindy M. Liu, Johan H. Melendez, Yelena M. Frankel, David M. Engelthaler, Maliha Aziz, Jolene R. Bowers, Rogan Rattray, Jacques Ravel, Chris Kingsley, Paul Keim, Gerald S. Lazarus, Jonathan M. Zenilman
Software Mentions: 6
Published: over 15 years ago

10.1186/s42523-019-0019-x

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand
Cited by: 17
Author(s): Kittipong Chaisiri, A. Christina Gill, Alexandr A. Stekolnikov, Soawapak Hinjoy, John McGarry, Alistair C. Darby, Sergé Morand, Benjamin L. Makepeace
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0245087

Anthropogenic landscape decreases mosquito biodiversity and drives malaria vector proliferation in the Amazon rainforest
Cited by: 16
Author(s): Leonardo Suveges Moreira Chaves, Eduardo Sterlino Bergo, Jan E. Conn, Gabriel Zorello Laporta, Paula Ribeiro Prist, Maria Anice Mureb Sallum
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12862-021-01773-1

Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
Cited by: 5
Author(s): Jiří Reif, Lucie Schmiedová, Jakub Kreisinger, Tomáš Albrecht, Jiří Reif, Tomasz S. Osiejuk, Radka Reifová
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-019-51432-1

Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sediments
Cited by: 9
Author(s): Hanna Sinkko, Iina Hepolehto, Christina Lyra, Johanna M. Rinta-Kanto, Anna Villnäs, Joanna Norkko, Alf Norkko, Sari Timonen
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0201031

Salmonella spp. transmission in a vertically integrated poultry operation: Clustering and diversity analysis using phenotyping (serotyping, phage typing) and genotyping (MLVA)
Cited by: 18
Author(s): Helen Crabb, Joanne L. Allen, Joanne M. Devlin, Simon M. Firestone, C. R. Wilks, James R. Gilkerson
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-84925-z

Ants modulate stridulatory signals depending on the behavioural context
Cited by: 6
Author(s): Alberto Masoni, Filippo Frizzi, Rachele Nieri, Luca Pietro Casacci, Valerio Mazzoni, Stefano Turillazzi, Giacomo Santini
Software Mentions: 5
Published: over 3 years ago

10.1002/mbo3.681

Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities?
Cited by: 4
Author(s): Karsten Karczewski, Patricia Göbel, Elisabeth I. Meyer
Software Mentions: 5
Published: over 6 years ago

10.3390/ani10112020

Vaginal Microbiota Is Stable throughout the Estrous Cycle in Arabian Mares
Cited by: 19
Author(s): Marta Barba, Rebeca Martínez-Boví, J.J. Quereda, M. L. Mocé, María Plaza-Dávila, E. Jiménez-Trigos, Ángel Gómez-Martín, Pedro González-Torres, Belén Carbonetto, E. García-Roselló
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-72460-2

Dental black plaque: metagenomic characterization and comparative analysis with white-plaque
Cited by: 4
Author(s): Verónica Veses, Pedro González-Torres, Belén Carbonetto, MÂa del Mar Jovani-Sancho, Raquel González-Martínez, Isidoro Cortell-Ballester, Chirag C. Sheth
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-61868-5

Climatic and edaphic controls over tropical forest diversity and vegetation carbon storage
Cited by: 49
Author(s): Florian Hofhansl, Eduardo Chacón‐Madrigal, Lucia Fuchslueger, Daniel Jenking, Albert Morera-Beita, Christoph Plutzar, Fernando Silla, Kelly M. Andersen, David M. Buchs, Stefan Dullinger, Konrad Fiedler, Oskar Franklin, Peter Hietz, Werner Huber, Carlos Alberto Quesada, Anja Rammig, Franziska Schrodt, Andrea G. Vincent, Anton Weissenhofer, Wolfgang Wanek
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.4732

Trade-offs for butterfly alpha and beta diversity in human-modified landscapes and tropical rainforests
Cited by: 5
Author(s): Hemchandranauth Sambhu, Alliea Nankishore, Stephen M. Turton, Tobin D. Northfield
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-017-11244-7

Methanogens predominate in natural corrosion protective layers on metal sheet piles
Cited by: 34
Author(s): Nardy Kip, Stefan Jansen, Márcio Fernandes Alves Leite, Mattias de Hollander, M. Afanasyev, Eiko E. Kuramae, Johannes A. van Veen
Software Mentions: 5
Published: about 7 years ago

10.1038/srep40170

Simultaneous abrupt shifts in hydrology and fish assemblage structure in a floodplain lake in the central Amazon
Cited by: 66
Author(s): Cristhiana Paula Röpke, Sidinéia Amadio, Jansen Zuanon, Efrem Jorge Gondim Ferreira, Cláudia Pereira de Deus, Tiago Pires, Kirk O. Winemiller
Software Mentions: 5
Published: almost 8 years ago

10.1186/gb-2014-15-5-r66

Exploration of bacterial community classes in major human habitats
Cited by: 101
Author(s): Yanjiao Zhou, Kathie A. Mihindukulasuriya, Hongyu Gao, Patricio S. La Rosa, Kristine M. Wylie, John Martin, Karthik Kota, William D. Shannon, Makedonka Mitreva, Erica Sodergren, George M. Weinstock
Software Mentions: 5
Published: almost 11 years ago

10.3389/fvets.2020.00371

Vaginal Microbiota Changes During Estrous Cycle in Dairy Heifers
Cited by: 29
Author(s): J.J. Quereda, Marta Barba, M. L. Mocé, J. Gomis, E. Jiménez-Trigos, Ángel García-Muñoz, Ángel Gómez-Martín, Pedro González-Torres, Belén Carbonetto, E. García-Roselló
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2019.00643

Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00772

Molecular Evidence for Metabolically Active Bacteria in the Atmosphere
Cited by: 72
Author(s): Ann M. Klein, Brendan J. M. Bohannan, Daniel A. Jaffe, David A. Levin, Jessica L. Green
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0036466

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Cited by: 546
Author(s): Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic
Software Mentions: 5
Published: over 12 years ago

10.3390/nu12102938

Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population
Cited by: 17
Author(s): Ángela S García-Vega, Vanessa Corrales-Agudelo, Alejandro Reyes, Juan S. Escobar
Software Mentions: 4
Published: about 4 years ago

10.1186/s40168-017-0301-7

Environmental drivers of viral community composition in Antarctic soils identified by viromics
Cited by: 87
Author(s): Evelien M. Adriaenssens, Rolf Kramer, Marc W. Van Goethem, Thulani P. Makhalanyane, Ian D. Hogg, Don A. Cowan
Software Mentions: 4
Published: over 7 years ago

10.3390/microorganisms9020411

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable
Cited by: 12
Author(s): Mark McCauley, Marlène Chiarello, Carla L. Atkinson, Colin R. Jackson
Software Mentions: 4
Published: over 3 years ago

10.1111/1755-0998.12956

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring
Cited by: 48
Author(s): Andjin Siegenthaler, Owen S. Wangensteen, Ana Z. Soto, Chiara Benvenuto, Laura Corrigan, Stefano Mariani
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0217136

Diversity and relative abundance of ammonia- and nitrite-oxidizing microorganisms in the offshore Namibian hypoxic zone
Cited by: 5
Author(s): Evan Lau, Caitlin H. Frame, Edward J. Nolan, Frank J. Stewart, Zachary Dillard, Daniel Lukich, Nicole E Mihalik, Katelyn Yauch, Marcus Kinker, Samantha Waychoff
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0188568

Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits
Cited by: 22
Author(s): Jessica A. Conlan, Craig Humphrey, Andrea Severati, David S. Francis
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0206492

Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments
Cited by: 6
Author(s): Jiří Neustupa, Yvonne‬ Němcová
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.581430

Environmental and Anthropogenic Factors Shape Major Bacterial Community Types Across the Complex Mountain Landscape of Switzerland
Cited by: 9
Author(s): Johanna Mayerhofer, Daniel Wächter, Pierluigi Calanca, Lukas Kohli, Tobias Roth, R. G. Meuli, Franco Widmer
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2015.01500

Dynamics of Bacterial Community Composition in the Malaria Mosquito's Epithelia
Cited by: 68
Author(s): Majoline T. Tchioffo, Anne Boissière, Luc Abate, Sandrine E. Nsango, Albert N. Bayibéki, Parfait Awono-Ambene, Richard Christen, Geoffrey Gimonneau, Isabelle Morlais
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2021.682142

Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs
Cited by: 12
Author(s): Sara Marañón-Jiménez, Dajana Radujković, Erik Verbruggen, Oriol Grau, Matthias Cuntz, Josep Peñuelas, Andreas Richter, Marion Schrumpf, Corinna Rebmann
Software Mentions: 4
Published: over 3 years ago

10.1126/sciadv.abf9557

Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia
Cited by: 19
Author(s): Dilli Prasad Rijal, Peter D. Heintzman, Youri Lammers, Nigel G. Yoccoz, Kelsey Erin Lorberau, Iva Pitelkova, Tomasz Goslar, Francisco Javier Ancin‐Murguzur, J. Sakari Salonen, Karin F. Helmens, Jostein Bakke, Mary E. Edwards, Torbjørn Alm, Kari Anne Bråthen, Antony G. Brown, Inger Greve Alsos
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-08083-x

Periphyton effects on bacterial assemblages and harmful cyanobacterial blooms in a eutrophic freshwater lake: a mesocosm study
Cited by: 18
Author(s): Yingshun Cui, Long Jin, So-Ra Ko, Seong-Jun Chun, Hyung-Seok Oh, Chang‐Soo Lee, Ankita Srivastava, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-62570-2

Scavenging crustacean fauna in the Chilean Patagonian Sea
Cited by: 3
Author(s): Guillermo Figueroa-Muñoz, Marco A. Retamal, Patricio R. De Los Ríos, Carlos Esse, Jorge Pérez-Schultheiss, Rolando Vega-Aguayo, Luz Boyero, Francisco Correa‐Araneda
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-67717-9

Diversity of a bacterial community associated with Cliona lobata Hancock and Gelliodes pumila (Lendenfeld, 1887) sponges on the South-East coast of India
Cited by: 5
Author(s): R. Meenatchi, Pownraj Brindangnanam, Saqib Hassan, Rathna Kumarasamy, George Seghal Kiran, Joseph Selvin
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-71888-w

Local management and landscape structure determine the assemblage patterns of spiders in vegetable fields
Cited by: 11
Author(s): Hafiz Sohaib Ahmed Saqib, Junhui Chen, Wei Chen, Gábor Pozsgai, Komivi Senyo Akutse, Muhammad Furqan Ashraf, Minsheng You, Geoff M. Gurr
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-98979-6

Biodiversity and biocatalyst activity of culturable hydrocarbonoclastic fungi isolated from Marac–Moruga mud volcano in South Trinidad
Cited by: 1
Author(s): Amanda C. Ramdass, Sephra N. Rampersad
Software Mentions: 4
Published: about 3 years ago

10.1038/s41396-020-0676-5

Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium
Cited by: 27
Author(s): Hwee Sze Tee, David W. Waite, Leo S. Payne, Martin Middleditch, Susie Wood, Kim M. Handley
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-96208-8

Grazing intensity drives plant diversity but does not affect forage production in a natural grassland dominated by the tussock-forming grass Andropogon lateralis Nees
Cited by: 9
Author(s): Pablo Giliard Zanella, Luis Henrique Paim Della Giustina, Cassiano Eduardo Pinto, T. C. Baldissera, Simone Werner, F. C. Garagorry, Martín Jaurena, Fernando A. Lattanzi, André Fischer Sbrissia
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0124054

Reef Fishes in Biodiversity Hotspots Are at Greatest Risk from Loss of Coral Species
Cited by: 41
Author(s): Sally J. Holbrook, Russell J. Schmitt, Vanessa Messmer, Andrew J. Brooks, Maya Srinivasan, Philip L. Munday, Geoffrey P. Jones
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0086209

How Does Pollen Chemistry Impact Development and Feeding Behaviour of Polylectic Bees?
Cited by: 144
Author(s): Maryse Vanderplanck, Romain Moerman, Pierre Rasmont, Georges Lognay, Bernard Wathelet, Ruddy Wattiez, Denis Michez
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj.81

Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns
Cited by: 100
Author(s): Gareth J. Williams, Jennifer E. Smith, Eric Conklin, Jamison M. Gove, Enric Sala, Stuart A. Sandin
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0099949

Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine Pampas
Cited by: 154
Author(s): Belén Carbonetto, Nicolás Rascovan, Roberto Álvarez, Alejandro Mentaberry, Martı́n Vázquez
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2020.01272

Microbiomes of Caribbean Octocorals Vary Over Time but Are Resistant to Environmental Change
Cited by: 20
Author(s): Mark McCauley, Colin R. Jackson, Tamar L. Goulet
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.1435

Biogeographic variation in the microbiome of the ecologically important sponge,Carteriospongia foliascens
Cited by: 41
Author(s): Heidi M. Luter, Stefanie Widder, Emmanuelle S. Botté, Muhammad Abdul Wahab, Steve W Whalan, Lucas Moitinho‐Silva, Torsten Thomas, Nicole S. Webster
Software Mentions: 3
Published: almost 9 years ago

10.7717/peerj.7744

Microbial communities associated with the black morel Morchella sextelata cultivated in greenhouses
Cited by: 41
Author(s): Gian Maria Niccolò Benucci, Reid Longley, Peng Zhang, Qi Zhao, Gregory Bonito, Fuqiang Yu
Software Mentions: 3
Published: about 5 years ago

10.1128/JCM.00764-14

Time between Collection and Storage Significantly Influences Bacterial Sequence Composition in Sputum Samples from Cystic Fibrosis Respiratory Infections
Cited by: 44
Author(s): Leah Cuthbertson, Geraint B. Rogers, Alan W. Walker, Anna Oliver, Tarana Hafiz, Lucas R. Hoffman, Mary Carroll, Julian Parkhill, Kenneth D. Bruce, Christopher J. van der Gast
Software Mentions: 3
Published: over 10 years ago

10.1038/srep28084

Integrated analysis of root microbiomes of soybean and wheat from agricultural fields
Cited by: 146
Author(s): Nicolás Rascovan, Belén Carbonetto, Diego Perrig, Marisa Díaz, Wilter Canciani, Matías Abalo, Julieta Alloati, Gustavo González-Anta, Martı́n Vázquez
Software Mentions: 3
Published: over 8 years ago

10.1111/1751-7915.12338

Succession of lignocellulolytic bacterial consortia bred anaerobically from lake sediment
Cited by: 10
Author(s): Elisa Korenblum, Diego Javier Jiménez, Jan Dirk van Elsas
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0096321

Nine Years of Irrigation Cause Vegetation and Fine Root Shifts in a Water-Limited Pine Forest
Cited by: 38
Author(s): Claude Herzog, Jan Steffen, Elisabeth Graf Pannatier, Irka Hajdas, Ivano Brunner
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms8081145

Fungal Community in Antarctic Soil Along the Retreating Collins Glacier (Fildes Peninsula, King George Island)
Cited by: 10
Author(s): Juliana Aparecida dos Santos, Edenilson Meyer, Lara Durães Sette
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.00232

Response of Deep Subsurface Microbial Community to Different Carbon Sources and Electron Acceptors during ∼2 months Incubation in Microcosms
Cited by: 30
Author(s): Lotta Purkamo, Malin Bomberg, Mari Nyyssönen, Lasse Ahonen, Ilmo Kukkonen, Merja Itävaara
Software Mentions: 3
Published: over 7 years ago

10.1111/cobi.13437

Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
Cited by: 65
Author(s): Eva Egelyng Sigsgaard, Felipe Torquato, Tobias Guldberg Frøslev, Alec B. M. Moore, Johan Molgard Sorensen, Pedro Range, Radhouane Ben‐Hamadou, Steffen Bach, Peter Rask Møller, Philip Francis Thomsen
Software Mentions: 3
Published: almost 5 years ago

10.1007/s10530-021-02577-6

Biological and trophic consequences of genetic introgression between endemic and invasive Barbus fishes
Cited by: 13
Author(s): Vanessa De Santis, Silvia Quadroni, J. Robert Britton, Antonella Carosi, Catherine Gutmann Roberts, Massimo Lorenzoni, Giuseppe Crosa, Serena Zaccara
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.3859

Long-term ecological data for conservation: Range change in the black-billed capercaillie (Tetrao urogalloides) in northeast China (1970s-2070s)
Cited by: 8
Author(s): Li Yang, Chao Zhang, Minhao Chen, Jingxin Li, Lei Yang, Zhaomin Huo, Shafiq Ahmad, Xiaofeng Luan
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0213355

A different suite: The assemblage of distinct fungal communities in water-damaged units of a poorly-maintained public housing building
Cited by: 17
Author(s): Iman Sylvain, Rachel Adams, John W. Taylor
Software Mentions: 3
Published: over 5 years ago

10.1186/1756-3305-6-139

Altitudinal variation in haemosporidian parasite distribution in great tit populations
Cited by: 51
Author(s): Juan van Rooyen, Fabrice Lalubin, Olivier Glaizot, Philippe Christe
Software Mentions: 3
Published: over 11 years ago

10.1038/s41396-020-00768-y

Temperature transcends partner specificity in the symbiosis establishment of a cnidarian
Cited by: 14
Author(s): Marcela Herrera, Shannon G. Klein, Sara Campana, Jit Ern Chen, A Prasanna, Carlos M. Duarte, Manuel Aranda
Software Mentions: 3
Published: about 4 years ago

10.1002/ece3.6005

Genetic diversity of the rain tree (Albizia saman) in Colombian seasonally dry tropical forest for informing conservation and restoration interventions
Cited by: 3
Author(s): Carolina Aguirre-Morales, Evert Thomas, Carlos Ivan Cardozo, J. P. Gutiérrez, Carolina Alcázar Caicedo, Luis Gonzalo Moscoso Higuita, Luís Augusto Becerra López-Lavalle, Mailyn González
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2016.00150

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
Cited by: 148
Author(s): Citlali Fonseca-García, Devin Coleman‐Derr, Etzel Garrido, Axel Visel, Susannah G. Tringe, Laila P. Partida‐Martínez
Software Mentions: 3
Published: over 8 years ago

10.3897/zookeys.707.14029

Herpetofaunal assemblages of a lowland broadleaf forest, an overgrown orchard forest and a lime orchard in Stann Creek, Belize
Cited by: 1
Author(s): Russell D. Gray, Colin Thomas Strine
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0187740

A comparison of the effects of fire on rodent abundance and diversity in the Great Basin and Mojave Deserts
Cited by: 13
Author(s): Tiffanny R. Sharp Bowman, Brock R. McMillan, Samuel B. St. Clair
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2014.00371

Community size and composition of ammonia oxidizers and denitrifiers in an alluvial intertidal wetland ecosystem
Cited by: 22
Author(s): Ziye Hu, Han Meng, Jin-Huan Shi, Naishun Bu, Changming Fang, Zhe‐Xue Quan
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2016.00051

Human Microbiota of the Argentine Population- A Pilot Study
Cited by: 12
Author(s): Belén Carbonetto, Mónica Fabbro, Mariela Sciara, Analía Seravalle, Guadalupe Méjico, Santiago Revale, Soledad Estrella, Bianca Brun, Marcelo Fay, Fabián Fay, Martı́n Vázquez
Software Mentions: 2
Published: almost 9 years ago

10.3390/plants9010004

Short-Term Post-Harvest Stress that Affects Profiles of Volatile Organic Compounds and Gene Expression in Rocket Salad during Early Post-Harvest Senescence
Cited by: 6
Author(s): Natasha D. Spadafora, Giacomo Cocetta, António Ferrante, Robert J. Herbert, Simone Dimitrova, Daniela Davoli, M Fernández, Valentine Patterson, Tinkara Vozel, Canesia Amarysti, Hilary J. Rogers, Carsten T. Müller
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2016.01707

A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes
Cited by: 92
Author(s): Sevasti Filippidou, Tina Wunderlin, Thomas Junier, Nicole Jeanneret, Cristina Dorador, Verónica Molina, David R. Johnson, Pilar Junier
Software Mentions: 2
Published: about 8 years ago

10.3390/microorganisms8010058

A Deeper Look into the Biodiversity of the Extremely Acidic Copahue volcano-Río Agrio System in Neuquén, Argentina
Cited by: 9
Author(s): Germán López Bedogni, Francisco Luis Massello, Alejandra Giaveno, Edgardo R. Donati, María Sofía Urbieta
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.4202

Amphibian and reptile biodiversity in the semi-arid region of the municipality of Nopala de Villagrán, Hidalgo, Mexico
Cited by: 3
Author(s): Andrea J. Roth-Monzón, Andrés Alberto Mendoza-Hernández, Oscar Flores‐Villela
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-75322-z

Fruit volatilome profiling through GC × GC-ToF-MS and gene expression analyses reveal differences amongst peach cultivars in their response to cold storage
Cited by: 20
Author(s): Antonella Muto, Carsten T. Müller, Leonardo Bruno, Laura McGregor, António Ferrante, Adriana Chiappetta, Maria Beatrice Bitonti, Hilary J. Rogers, Natasha D. Spadafora
Software Mentions: 2
Published: about 4 years ago

10.1093/g3journal/jkab260

Diversity in olfactory receptor repertoires is associated with dietary specialization in a genus of frugivorous bat
Cited by: 7
Author(s): Laurel Yohe, Leith B. Leiser‐Miller, Zofia A. Kaliszewska, Paul Donat, Sharlene E. Santana, Liliana M. Dávalos
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.2459

Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico
Cited by: 22
Author(s): Silvia Pajares, Ana E. Escalante, Ana M. Noguez, Felipe García‐Oliva, Celeste Martínez-Piedragil, Silke Cram, Luis E. Eguiarte, Valeria Souza
Software Mentions: 2
Published: about 8 years ago

10.1038/srep33430

Temporal Development of Gut Microbiota in Triclocarban Exposed Pregnant and Neonatal Rats
Cited by: 22
Author(s): Rebekah C. Kennedy, Russell R. Fling, Michael S. Robeson, Arnold M. Saxton, Robert Donnell, John L. Darcy, David A. Bemis, Jiang Liu, Ling Zhao, Jiangang Chen
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.7493

The effect of mangrove restoration on avian assemblages of a coastal lagoon in southern Mexico
Cited by: 9
Author(s): Julio Canales-Delgadillo, Rosela Pérez-Ceballos, Arturo Zaldívar-Jiménez, Martín Merino–Ibarra, Gabriela Cardoza, J.G. Cardoso-Mohedano
Software Mentions: 2
Published: about 5 years ago

10.1186/1756-3305-5-41

Mosquito (Diptera: Culicidae) assemblages associated with Nidularium and Vriesea bromeliads in Serra do Mar, Atlantic Forest, Brazil
Cited by: 25
Author(s): Tatiani Cristina Marques, Brian P. Bourke, Gabriel Zorello Laporta, Maria Anice Mureb Sallum
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-017-12706-8

Odour dialects among wild mammals
Cited by: 10
Author(s): Eleanor Kean, Michael William Bruford, Isa‐Rita M. Russo, Carsten T. Müller, Elizabeth Anna Chadwick
Software Mentions: 2
Published: about 7 years ago

10.3390/nu11010051

Higher Fecal Short-Chain Fatty Acid Levels Are Associated with Gut Microbiome Dysbiosis, Obesity, Hypertension and Cardiometabolic Disease Risk Factors
Cited by: 280
Author(s): Jacobo de la Cuesta-Zuluaga, Noel T. Mueller, Rafael Álvarez-Quintero, Eliana P. Velásquez-Mejía, Jelver A. Sierra, Vanessa Corrales-Agudelo, Jenny Andrea Carmona, José M. Abad, Juan S. Escobar
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-48871-1

Species-energy relationships of indigenous and invasive species may arise in different ways – a demonstration using springtails
Cited by: 6
Author(s): Anne M. Treasure, Peter C. le Roux, Mashudu H. Mashau, Steven L. Chown
Software Mentions: 2
Published: about 5 years ago

10.1186/s13071-016-1865-y

Searching for putative avian malaria vectors in a Seasonally Dry Tropical Forest in Brazil
Cited by: 27
Author(s): Francisco C. Ferreira, Raquel A. Rodrigues, Yukita Sato, Magno Augusto Zazá Borges, Érika Martins Braga
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0047676

Present Spatial Diversity Patterns of Theobroma cacao L. in the Neotropics Reflect Genetic Differentiation in Pleistocene Refugia Followed by Human-Influenced Dispersal
Cited by: 99
Author(s): Evert Thomas, Maarten van Zonneveld, Judy Loo, T. Hodgkin, Gea Galluzzi, Jacob van Etten
Software Mentions: 2
Published: about 12 years ago

10.3390/toxics9080190

Negative Consequences on the Growth, Morphometry, and Community Structure of the Kelp Macrocystis pyrifera (Phaeophyceae, Ochrophyta) by a Short Pollution Pulse of Heavy Metals and PAHs
Cited by: 5
Author(s): Roddy Jara-Yáñez, Andrés Meynard, Gladys Acosta, Nicolás Latorre-Padilla, Carolina Oyarzo-Miranda, Francisco Castañeda, Florentina Piña, Jorge Rivas, Cristian Bulboa, Loretto Contreras–Porcia
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0135928

Plant Size as Determinant of Species Richness of Herbivores, Natural Enemies and Pollinators across 21 Brassicaceae Species
Cited by: 38
Author(s): Hella Schlinkert, Catrin Westphal, Yann Clough, Zsuzsanna László, Martin Ludwig, Teja Tscharntke
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0159195

Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort
Cited by: 15
Author(s): Bibiana G. Crespo, Philip Wallhead, Ramiro Logares, Carlos Pedrós-Alió
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0257007

Climate suitability predictions for the cultivation of macadamia (Macadamia integrifolia) in Malawi using climate change scenarios
Cited by: 7
Author(s): Emmanuel Junior Zuza, Kadmiel Maseyk, Shonil A. Bhagwat, Kauê de Sousa, Andrew Emmott, William Rawes, Yoseph N. Araya
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0008422

The Effects of Circumcision on the Penis Microbiome
Cited by: 204
Author(s): Lance B. Price, Cindy M. Liu, Kristine E. Johnson, Maliha Aziz, Matthew K. Lau, Jolene R. Bowers, Jacques Ravel, Paul Keim, David Serwadda, Maria J. Wawer, Ronald H. Gray
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0184457

Spatially explicit multi-threat assessment of food tree species in Burkina Faso: A fine-scale approach
Cited by: 46
Author(s): Hannes Gaisberger, Roeland Kindt, Judy Loo, Marco Schmidt, Fidèle Bognounou, Sié Sylvestre Da, Ousmane Diallo, Souleymane Ganaba, Assan Gnoumou, Djingdia Lompo, Anne Mette Lykke, Elisée Mbayngone, Blandine Marie Ivette Nacoulma, Moussa Ouédraogo, Oumarou Ouédraogo, Charles Parkouda, Stefan Porembski, Patrice Savadogo, Adjima Thiombiano, Guibien Cléophas Zerbo, Barbara Vinceti
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0053497

The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes
Cited by: 107
Author(s): Marı́a Eugenia Farı́as, Nicolás Rascovan, Diego M. Toneatti, Virginia Helena Albarracín, María Regina Flores, Daniel Gustavo Poiré, Mónica M. Collavino, O. Mario Aguilar, Martı́n Vázquez, Lùbos Polerecký
Software Mentions: 1
Published: almost 12 years ago

Projects: cran: BiodiversityR

Papers Mentioning BiodiversityR 115