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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1128/mBio.01054-19

https://doi.org/10.1128/mBio.01054-19

Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures

Cited by: 28
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Simon Lax
Published: almost 6 years ago

Software Mentions 18

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggnetwork
Geometries to Plot Networks with 'ggplot2'
Papers that mentioned: 17
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
Very Likely Science (75)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: MED
Mediation by Tilted Balancing
Papers that mentioned: 188
Very Likely Science (83)
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
Very Likely Science (100)
cran: ranger
A Fast Implementation of Random Forests
Papers that mentioned: 91
Very Likely Science (100)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
Very Likely Science (65)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).
Papers that mentioned: 22
Very Likely Science (100)
pypi: ranger
A Python package for the manipulation of Range objects
Papers that mentioned: 91
Very Likely Science (100)
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284
Very Likely Science (65)