Ecosyste.ms: Papers

10.1128/mBio.01054-19

Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures
Cited by: 28
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Simon Lax
Software Mentions: 18
Published: over 5 years ago

10.1186/s40168-018-0569-2

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
Cited by: 107
Author(s): Joshua P. Earl, Nithin D. Adappa, Jarosław Król, Archana Bhat, Sergey Balashov, Rachel Ehrlich, James N. Palmer, Alan D. Workman, Mariel Blasetti, Bhaswati Sen, Jocelyn Hammond, Noam A. Cohen, Garth D. Ehrlich, Joshua Chang Mell
Software Mentions: 13
Published: about 6 years ago

10.3389/fgene.2020.489357

Cascabel: A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results
Cited by: 13
Author(s): Alejandro Abdala Asbun, Marc Besseling, Sergio Balzano, Judith van Bleijswijk, Harry J. Witte, Laura Villanueva, Julia C. Engelmann
Software Mentions: 11
Published: about 4 years ago

10.1038/s41598-018-38339-z

Spatial distribution of prokaryotic communities in hypersaline soils
Cited by: 26
Author(s): Blanca Vera-Gargallo, Taniya Roy Chowdhury, Joseph Brown, Sarah Fansler, Ana Durán‐Viseras, Cristina Sánchez‐Porro, Vanessa Bailey, Janet Jansson, António Ventosa
Software Mentions: 9
Published: almost 6 years ago

10.1186/s13059-020-02195-w

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Cited by: 107
Author(s): Alon Shaiber, Amy Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid, Mahmoud Yousef, Andrea R. Watson, Karen Lolans, Özcan C. Esen, Sonny T. M. Lee, Nora Downey, Hilary G. Morrison, Floyd E. Dewhirst, Jessica L. Mark Welch, A. Murat Eren
Software Mentions: 8
Published: about 4 years ago

10.3389/fgene.2019.00400

NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods
Cited by: 10
Author(s): Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Haishuo Ji, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan, Shan Gao
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2014.00601

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data
Cited by: 8
Author(s): Alban Ramette, Pier Luigi Buttigieg
Software Mentions: 7
Published: about 10 years ago

10.3389/fmicb.2021.703792

Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean
Cited by: 5
Author(s): Guillaume Schwob, Nicolás I. Segovia, Claudio A. González‐Wevar, Léa Cabrol, Julieta Orlando, Élie Poulin
Software Mentions: 7
Published: over 3 years ago

10.1080/19490976.2020.1814120

Analysis of 16S rRNA genes reveals reduced Fusobacterial community diversity when translocating from saliva to GI sites
Cited by: 10
Author(s): Miles Richardson, Ji‐Chang Ren, Mara Roxana Rubinstein, Jamila A Taylor, Richard A. Friedman, Bo Shen, Yiping W. Han
Software Mentions: 6
Published: about 4 years ago

10.1038/s41396-019-0549-y

Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion
Cited by: 16
Author(s): Colin Miller, Henry C Holm, Lara Horstmann, J. C. George, Helen F. Fredricks, Benjamin A. S. Van Mooy, Amy Apprill
Software Mentions: 6
Published: about 5 years ago

10.1038/ismej.2017.165

Recurrent patterns of microdiversity in a temperate coastal marine environment
Cited by: 110
Author(s): Meghan Chafee, Antonio Fernández-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A. Murat Eren, Hanno Teeling, Rudolf Amann
Software Mentions: 6
Published: about 7 years ago

10.1128/mSystems.00232-18

Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
Cited by: 31
Author(s): Sara F. Paver, Daniel Muratore, Ryan J. Newton, Maureen L. Coleman
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2105-11-221

GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs
Cited by: 77
Author(s): Alberto Risueño, Celia Fontanillo, Marcel E. Dinger, Javier De Las Rivas
Software Mentions: 5
Published: over 14 years ago

10.3389/fpsyg.2020.01299

Development and Validation of a Self-Determination Theory-Based Measure of Motivation to Exercise and Diet in Children
Cited by: 20
Author(s): Giada Pietrabissa, Alessandro Rossi, Maria Borrello, Gian Mauro Manzoni, Stefania Mannarini, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-020-00841-w

Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets
Cited by: 49
Author(s): Isabel F. Escapa, Yanmei Huang, Tsute Chen, Maoxuan Lin, Alexis Kokaras, Floyd E. Dewhirst, Katherine P. Lemon
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0230594

A Zipf-plot based normalization method for high-throughput RNA-seq data
Cited by: 6
Author(s): Bin Wang
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-68891-6

Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei aquaculture
Cited by: 27
Author(s): Yustian Rovi Alfiansah, Sonja Peters, Jens Harder, Christiane Hassenrück, Astrid Gärdes
Software Mentions: 5
Published: over 4 years ago

10.1093/bib/bbz155

Current challenges and best-practice protocols for microbiome analysis
Cited by: 219
Author(s): Richa Bharti, Dominik G. Grimm
Software Mentions: 4
Published: about 5 years ago

10.3390/ani10061055

Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput Sequencing
Cited by: 5
Author(s): Arturo Levicán, James S. Fisher, Sandra L. McLellan, Rubén Avendaño‐Herrera
Software Mentions: 4
Published: over 4 years ago

10.1186/s40168-018-0568-3

Fecal source identification using random forest
Cited by: 85
Author(s): Adélaïde Roguet, A. Murat Eren, Ryan J. Newton, Sandra L. McLellan
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00163-18

Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass
Cited by: 90
Author(s): Vincent Caruso, Xubo Song, Mark Asquith, Lisa Karstens
Software Mentions: 4
Published: almost 6 years ago

10.1080/20002297.2020.1746494

Co-occurrence of yeast, streptococci, dental decay, and gingivitis in the post-partum period: results of a longitudinal study
Cited by: 6
Author(s): Kirtana Ramadugu, Freida Blostein, Deesha Bhaumik, Wenwen Jiang, Elyse Davis, Elizabeth Salzman, Usha Srinivasan, Carl F. Marrs, Katherine Neiswanger, Daniel W. McNeil, Mary L. Marazita, Betsy Foxman
Software Mentions: 4
Published: almost 5 years ago

10.3390/s18041203

Rolling Bearing Fault Diagnosis Based on an Improved HTT Transform
Cited by: 50
Author(s): Bin Pang, Guiji Tang, Tian Tian, Chong Zhou
Software Mentions: 3
Published: over 6 years ago

10.1128/mSystems.00187-18

New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract
Cited by: 302
Author(s): Isabel F. Escapa, Tsute Chen, Yanmei Huang, Prasad Gajare, Floyd E. Dewhirst, Katherine P. Lemon
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2105-10-35

The Genome Reverse Compiler: an explorative annotation tool
Cited by: 13
Author(s): Andrew S. Warren, João Carlos Setúbal
Software Mentions: 3
Published: almost 16 years ago

10.3390/s18124497

A Robust Approach to TDMA Synchronization in Aerial Networks
Cited by: 6
Author(s): Luis Ramos Pinto, Luís Almeida
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2016.00564

Individuality, Stability, and Variability of the Plaque Microbiome
Cited by: 69
Author(s): Daniel R. Utter, Jessica L. Mark Welch, Gary G. Borisy
Software Mentions: 3
Published: over 8 years ago

10.1186/s13063-021-05063-5

MR CLEAN-NO IV: intravenous treatment followed by endovascular treatment versus direct endovascular treatment for acute ischemic stroke caused by a proximal intracranial occlusion—study protocol for a randomized clinical trial
Cited by: 40
Author(s): Kilian M. Treurniet, Natalie E. LeCouffe, Manon Kappelhof, Bart J. Emmer, Adriaan C.G.M. van Es, Jelis Boiten, Geert J. Lycklama, Koos Keizer, Lonneke S.F. Yo, Hester F. Lingsma, Wim H. van Zwam, Inger de Ridder, Robert J. van Oostenbrugge, Aad van der Lugt, Diederik W.J. Dippel, Jonathan M. Coutinho, Yvo B.W.E.M. Roos, Charles B. L. M. Majoie
Software Mentions: 3
Published: almost 4 years ago

10.1038/ismej.2014.195

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
Cited by: 449
Author(s): A. Murat Eren, Hilary G. Morrison, Pamela J. Lescault, Julie Réveillaud, Joseph H. Vineis, Mitchell L. Sogin
Software Mentions: 3
Published: about 10 years ago

10.1128/mBio.01237-17

The Human Salivary Microbiome Is Shaped by Shared Environment Rather than Genetics: Evidence from a Large Family of Closely Related Individuals
Cited by: 79
Author(s): Liam P. Shaw, Andre L. R. Ribeiro, Adam P. Levine, Nikolas Pontikos, François Balloux, Anthony W. Segal, Adam P. Roberts, Andrew Smith
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-018-4448-9

The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain
Cited by: 37
Author(s): Wen Xie, Xin Yang, Chunhai Chen, Zezhong Yang, Long Guo, Dan Wang, Jinqun Huang, Hailin Zhang, Yanan Wen, Jinyang Zhao, Qingjun Wu, Shaoli Wang, Brad S. Coates, Xuguo Zhou, Youjun Zhang
Software Mentions: 3
Published: almost 7 years ago

10.1080/20002297.2017.1374152

Effect of maltitol-containing chewing gum use on the composition of dental plaque microbiota in subjects with active dental caries
Cited by: 10
Author(s): Erica M. Prosdocimi, James Kistler, Rebecca Moazzez, Clémentine Thabuis, Caroline Perreau, William G. Wade
Software Mentions: 3
Published: almost 8 years ago

10.1093/femsec/fix029

Reconciliation between operational taxonomic units and species boundaries
Cited by: 54
Author(s): Mohamed Mysara, Peter Vandamme, Ruben Props, Frederiek‐Maarten Kerckhof, Natalie Leys, Nico Boon, Jeroen Raes, Pieter Monsieurs
Software Mentions: 3
Published: almost 8 years ago

10.1128/AEM.01756-16

Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: a Cross-Sectional Cohort Study in Malawi
Cited by: 35
Author(s): Liam P. Shaw, Ulla Harjunmaa, Ronan Doyle, Simeon Mulewa, Davie Charlie, Kenneth Maleta, Robin E. Callard, A Sarah Walker, François Balloux, Per Ashorn, Nigel Klein
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-017-08560-3

Non-thermal plasma-treated solution demonstrates antitumor activity against pancreatic cancer cells in vitro and in vivo
Cited by: 111
Author(s): Kim Rouven Liedtke, Sander Bekeschus, André Kaeding, Christine Hackbarth, Jens-Peter Kuehn, Claus–Dieter Heidecke, Wolfram von Bernstorff, Thomas von Woedtke, Lars Ivo Partecke
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0220327

Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea
Cited by: 7
Author(s): Yujeong Park, Hye Yeong Nam, Sunghoon Baek, Si Hyeock Lee, Joon-Ho Lee
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-4008-8

Genetic influences on the human oral microbiome
Cited by: 57
Author(s): Brittany A. Demmitt, Robin P. Corley, Brooke M. Huibregtse, Matthew C. Keller, John K. Hewitt, Matthew B. McQueen, Rob Knight, Ivy McDermott, Kenneth Krauter
Software Mentions: 3
Published: over 7 years ago

10.1128/mSystems.00023-18

Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run
Cited by: 53
Author(s): Yi Chun Yeh, David M. Needham, Ella T. Sieradzki, Jed A. Fuhrman
Software Mentions: 3
Published: over 6 years ago

10.3390/s140100283

Fault Detection of Roller-Bearings Using Signal Processing and Optimization Algorithms
Cited by: 18
Author(s): Dae-Ho Kwak, Lee Donghan, Jong-Hyo Ahn, Bong-Hwan Koh
Software Mentions: 3
Published: almost 11 years ago

10.3390/e20090667

Application of Mutual Information-Sample Entropy Based MED-ICEEMDAN De-Noising Scheme for Weak Fault Diagnosis of Hoist Bearing
Cited by: 18
Author(s): Fen Yang, Ziming Kou, Juan Wu, Tengyu Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.00365

Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
Cited by: 52
Author(s): Michelle A. Berry, Jeffrey D. White, Timothy W. Davis, Sunit Jain, Thomas H. Johengen, Gregory J. Dick, Orlando Sarnelle, Vincent J. Denef
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.2341

A heritability-based comparison of methods used to cluster 16S rRNA gene sequences into operational taxonomic units
Cited by: 34
Author(s): Matthew A. Jackson, Jordana T. Bell, Tim D. Spector, Claire J. Steves
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00438

Niche Separation Increases With Genetic Distance Among Bloom-Forming Cyanobacteria
Cited by: 29
Author(s): Nicolas Tromas, Zofia E. Taranu, Bryan D. Martin, Amy Willis, Nathalie Fortin, Charles W. Greer, B. Jesse Shapiro
Software Mentions: 2
Published: over 6 years ago

10.3390/ijerph15030498

Comparative Effectiveness of Published Interventions for Elderly Fall Prevention: A Systematic Review and Network Meta-Analysis
Cited by: 48
Author(s): Peixia Cheng, Liheng Tan, Peishan Ning, Li Li, Yuyan Gao, Yue Wu, David C. Schwebel, Haitao Chu, Huaiqiong Yin, Guoqing Hu
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-8-97

MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
Cited by: 42
Author(s): Huaiqiu Zhu, Gangqing Hu, Yifan Yang, Jin Wang, Zhen‐Su She
Software Mentions: 2
Published: almost 18 years ago

10.15252/emmm.202012387

μLED‐based optical cochlear implants for spectrally selective activation of the auditory nerve
Cited by: 23
Author(s): Alexander Dieter, Eric Klein, Daniel Keppeler, Lukasz Jablonski, Tamás Harczos, Gerhard Hoch, Vladan Rankovic, Paul Oliver, Marcus Jeschke, Patrick Ruther, Tobias Moser
Software Mentions: 2
Published: over 4 years ago

10.1016/j.bbr.2017.08.010

The rat retrosplenial cortex as a link for frontal functions: A lesion analysis
Cited by: 23
Author(s): Anna L. Powell, Andrew John Dudley Nelson, Emma Hindley, Moira Davies, John P. Aggleton, Seralynne Denise Vann
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.593

Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments
Cited by: 40
Author(s): Luke R. Thompson, Chris Field, Tamara N. Romanuk, David Kamanda Ngugi, Rania Siam, Hamza El Dorry, Ulrich Stingl
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2121-8-S1-S8

Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery
Cited by: 47
Author(s): Laura E. Boucheron, Zhiqiang Bi, Neal R. Harvey, B. S. Manjunath, David L. Rimm
Software Mentions: 2
Published: over 17 years ago

10.3390/ijms20174267

Ceritinib-Induced Regression of an Insulin-Like Growth Factor-Driven Neuroepithelial Brain Tumor
Cited by: 10
Author(s): Alexandra Russo, Claudia Paret, Francesca Alt, Jürgen Burhenne, Margaux Fresnais, Wolfgang Wagner, Martin Gläser, Hannah Bender, Sabrina Huprich, Patrick N. Harter, Katharina Filipski, Nadine Lehmann, Nora Backes, Lea Roth, Larissa Seidmann, Clemens Sommer, Marc A. Brockmann, Torsten Pietsch, Marie A. Neu, Arthur Wingerter, Jörg Faber
Software Mentions: 2
Published: over 5 years ago

10.3390/insects11010035

Competitive Displacement between Bemisia tabaci MEAM1 and MED and Evidence for Multiple Invasions of MED
Cited by: 14
Author(s): Xiao‐Tian Tang, Li Cai, Shinsheng Yuan, Lili Xu, Yu‐Zhou Du
Software Mentions: 2
Published: almost 5 years ago

10.1002/ar.24136

Variations in the Size and Shape of Human Cochlear Malformation Types
Cited by: 17
Author(s): Anandhan Dhanasingh
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0248819

Comparison of life history parameters of two different genetic clusters of Bemisia tabaci MED (Hemiptera: Aleyrodidae) through single and cross mating
Cited by: 1
Author(s): Yujeong Park, Young-Gyun Park, Joon-Ho Lee
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-10-552

Genome reannotation of Escherichia coli CFT073 with new insights into virulence
Cited by: 47
Author(s): Chengwei Luo, Gangqing Hu, Huaiqiu Zhu
Software Mentions: 2
Published: about 15 years ago

10.1186/s13059-021-02291-5

MEDALT: single-cell copy number lineage tracing enabling gene discovery
Cited by: 14
Author(s): Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jun Dou, Jiaying Han, Darlan Conterno Minussi, Ruli Gao, Ding Li, Nicholas E. Navin, Ken Chen
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0171119

Rate dependent influence of arterial desaturation on self-selected exercise intensity during cycling
Cited by: 5
Author(s): Saro D. Farra, Stephen S. Cheung, Scott Thomas, Ira Jacobs
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphys.2018.01431

GEMS: A Fully Integrated PETSc-Based Solver for Coupled Cardiac Electromechanics and Bidomain Simulations
Cited by: 2
Author(s): Sander Arens, Hans Dierckx, Alexander V. Panfilov
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-017-12387-3

Transcriptome analyses suggest a novel hypothesis for whitefly adaptation to tobacco
Cited by: 8
Author(s): Wei Xia, Xin Ru Wang, Yan Liang, Shu‐Sheng Liu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-11285-y

Precipitation in a warming world: Assessing projected hydro-climate changes in California and other Mediterranean climate regions
Cited by: 215
Author(s): Suraj D. Polade, Alexander Gershunov, Daniel R. Cayan, Michael D. Dettinger, David W. Pierce
Software Mentions: 2
Published: over 7 years ago

10.3390/mi12070785

Electrical Signal Modeling in Cochlear Implants. Study of Temperature and Humidity Effects
Cited by: 1
Author(s): Maria‐Alexandra Paun, Vladimir‐Alexandru Paun, Viorel‐Puiu Paun
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0021160

Measuring Nepotism through Shared Last Names: The Case of Italian Academia
Cited by: 54
Author(s): Stefano Allesina
Software Mentions: 2
Published: over 13 years ago

10.1186/s13643-018-0884-5

Quantified patient preferences for lifestyle intervention programs for diabetes prevention—a protocol for a systematic review
Cited by: 7
Author(s): Charalabos-Markos Dintsios, Nadja Chernyak, Benjamin Grehl, Andrea Icks
Software Mentions: 2
Published: about 6 years ago

10.1038/s41398-021-01632-z

Multi-omics driven predictions of response to acute phase combination antidepressant therapy: a machine learning approach with cross-trial replication
Cited by: 13
Author(s): Jeremiah B. Joyce, Caroline W. Grant, Duan Liu, Siamak MahmoudianDehkordi, Rima Kaddurah‐Daouk, Michelle Skime, Joanna M. Biernacka, Mark A. Frye, Taryn L. Mayes, Thomas Carmody, Paul E. Croarkin, Liewei Wang, Richard M. Weinshilboum, William V. Bobo, Madhukar H. Trivedi, Arjun P. Athreya
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2105-11-119

Prodigal: prokaryotic gene recognition and translation initiation site identification
Cited by: 7,098
Author(s): Doreene R. Hyatt, Gwo Liang Chen, Philip F. LoCascio, Miriam Land, Frank W. Larimer, Loren Hauser
Software Mentions: 2
Published: almost 15 years ago

10.1038/srep32423

Longitudinal in vivo MRI in a Huntington’s disease mouse model: Global atrophy in the absence of white matter microstructural damage
Cited by: 25
Author(s): Jessica J Steventon, Rebecca C. Trueman, Da Ma, Emma Yhnell, Zubeyde Bayram-Weston, Marc Modat, M. Jorge Cardoso, Sébastien Ourselin, Mark F. Lythgoe, Andrew J. Stewart, Anne Elizabeth Rosser, Derek K. Jones
Software Mentions: 2
Published: over 8 years ago

10.3389/fnhum.2018.00343

Assessment of Metacognition and Reversal Learning in Parkinson’s Disease: Preliminary Results
Cited by: 4
Author(s): Carlos Trenado, Matthias Boschheidgen, Julia Rübenach, K. N’Diaye, Alfons Schnitzler, Luc Mallet, Lars Wojtecki
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00143-19

Component Microenvironments and System Biogeography Structure Microorganism Distributions in Recirculating Aquaculture and Aquaponic Systems
Cited by: 35
Author(s): Ryan P. Bartelme, Matthew C. Smith, Osvaldo J. Sepulveda‐Villet, Ryan J. Newton
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11568

Genetic connectivity between Atlantic bluefin tuna larvae spawned in the Gulf of Mexico and in the Mediterranean Sea
Cited by: 4
Author(s): Carolina Johnstone, Montse Pérez, Estrella Malca, José María Suárez Quintanilla, Trika Gerard, Diego Lozano-Peral, Francisco Alemany, John T. Lamkin, A. García, Raúl Láiz-Carrión
Software Mentions: 2
Published: over 3 years ago

10.3390/life11030265

Benefits of Binaural Integration in Cochlear Implant Patients with Single-Sided Deafness and Residual Hearing in the Implanted Ear
Cited by: 3
Author(s): Artur Lorens, Anita Obrycka, Henryk Skarżyńśki
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.heliyon.2018.e00813

Reducing electric energy consumption in linear Fresnel collector solar fields coupled to thermal desalination plants by optimal mirror defocusing
Cited by: 13
Author(s): Mohamed Alhaj, Sami G. Al-Ghamdi
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00869-19

FORENSIC: an Online Platform for Fecal Source Identification
Cited by: 12
Author(s): Adélaïde Roguet, Özcan C. Esen, A. Murat Eren, Ryan J. Newton, Sandra L. McLellan
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0183435

Identification of miR-16 as an endogenous reference gene for the normalization of urinary exosomal miRNA expression data from CKD patients
Cited by: 79
Author(s): Tim Lange, Sylvia Stracke, Rainer Rettig, Uwe Lendeckel, Jana Kuhn, Rabea Schlüter, Volkhard Rippe, Karlhans Endlich, Nicole Endlich
Software Mentions: 2
Published: over 7 years ago

10.1007/s00213-015-4070-3

Impact of adolescent ethanol exposure and adult amphetamine self-administration on evoked striatal dopamine release in male rats
Cited by: 6
Author(s): Linnea Granholm, Samuel Rowley, Maria Ellgren, Lova Segerström, Ingrid Nylander
Software Mentions: 2
Published: about 9 years ago

10.1007/s00399-021-00764-5

Strukturmerkmale und Voraussetzungen zur ambulanten Implantation von implantierbaren Defibrillatoren, Geräten zur kardialen Resynchronisation und Ereignisrekordern
Cited by: 0
Author(s): Thomas M. Helms, Ralph Bosch, C. Hansen, Cord Willhöft, Bettina Zippel-Schultz, Christoph A. Karle, Jörg O. Schwab
Software Mentions: 1
Published: over 3 years ago

10.1002/hipo.23289

Activation of ventral <scp>CA1</scp> hippocampal neurons projecting to the lateral septum during feeding
Cited by: 16
Author(s): Kenzo Kosugi, Kouji Yoshida, T. Suzuki, Kenta Kobayashi, Kazunari Yoshida, Masaru Mimura, Kenji F. Tanaka
Software Mentions: 1
Published: about 4 years ago

10.4103/0019-5413.62051

Endoscopic lumbar discectomy: Experience of first 100 cases
Cited by: 53
Author(s): Amit Jhala, Manish Mistry
Software Mentions: 1
Published: over 14 years ago

10.3390/insects11120847

Population Dynamics of Whiteflies and Associated Viruses in South America: Research Progress and Perspectives
Cited by: 15
Author(s): Renate Krause‐Sakate, Luís Fernando Maranho Watanabe, Eduardo Silva Gorayeb, Felipe Barreto da Silva, Daniel de Lima Alvarez, Vinicius Henrique Bello, Angélica Maria Nogueira, Bruno Rossitto De Marchi, Eduardo Vicentin, Marcos Roberto Ribeiro‐Júnior, Julio Massaharu Marubayashi, Claudia Andrea Rojas-Bertini, Cristiane Müller, Regiane Cristina Oliveira de Freitas Bueno, Merlín Rosales, Murad Ghanim, Marcelo Agenor Pavan
Software Mentions: 1
Published: about 4 years ago

10.1172/jci.insight.150698

Scn2a severe hypomorphic mutation decreases excitatory synaptic input and causes autism-associated behaviors
Cited by: 9
Author(s): Honggang Wang, Charlotte C. Bavley, Anfei Li, Rebecca Jones, Jonathan E. Hackett, Yared Bayleyen, Francis S. Lee, Anjali M. Rajadhyaksha, Geoffrey S. Pitt
Software Mentions: 1
Published: over 3 years ago

10.1093/rb/rbw029

Comparison of safety and efficiency of microendoscopic discectomy with automatic nerve retractor and with nerve hook
Cited by: 0
Author(s): Hao Yin, Yupeng Wang, Zhiye Qiu, Zhanhui Du, Yimin Wu, Shuwen Li
Software Mentions: 1
Published: about 8 years ago

10.1016/j.ssmph.2021.100871

Intentionally ending one's own life in the presence or absence of a medical condition: A nationwide mortality follow-back study
Cited by: 1
Author(s): Martijn Hagens, H. Roeline W. Pasman, Agnes van der Heide, Bregje D. Onwuteaka-Philipsen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-019-0219-y

Mercury concentrations in biota in the Mediterranean Sea, a compilation of 40 years of surveys
Cited by: 30
Author(s): Sergio Cinnirella, Delia Evelina Bruno, Nicola Pirrone, Milena Horvat, Igor Živković, David C. Evers, Sarah Johnson, Elsie M. Sunderland
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-29772-1

Transcriptome profiling of whisker follicles in methamphetamine self-administered rats
Cited by: 5
Author(s): Sanghoon Song, Won‐Jun Jang, Jihye Hwang, Byoungduck Park, Jung‐Hee Jang, Youngho Seo, Chae Ha Yang, Sooyeun Lee, Chul‐Ho Jeong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33339-5

Comparison Of Four Dietary Scores As Determinants Of Coronary Heart Disease Mortality
Cited by: 8
Author(s): Alessandro Menotti, Paolo Emilio Puddu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71324-z

Novel miRNA signature for predicting the stage of hepatocellular carcinoma
Cited by: 36
Author(s): Srinivasulu Yerukala Sathipati, Shinn-Ying Ho
Software Mentions: 1
Published: over 4 years ago

10.3390/s150204154

Characterization of a Field Spectroradiometer for Unattended Vegetation Monitoring. Key Sensor Models and Impacts on Reflectance
Cited by: 23
Author(s): Javier Pacheco‐Labrador, M. Pilar Martín
Software Mentions: 1
Published: almost 10 years ago

10.3390/s150613725

A Cross Structured Light Sensor and Stripe Segmentation Method for Visual Tracking of a Wall Climbing Robot
Cited by: 18
Author(s): Liguo Zhang, Jianguo Sun, Guisheng Yin, Jing Zhao, Qilong Han
Software Mentions: 1
Published: over 9 years ago

10.3390/s151129363

Early Fault Diagnosis of Bearings Using an Improved Spectral Kurtosis by Maximum Correlated Kurtosis Deconvolution
Cited by: 78
Author(s): Feng Jia, Yaguo Lei, Hongkai Shan, Jing Lin
Software Mentions: 1
Published: about 9 years ago

10.3390/s18093031

Extensive Experimentations on Opportunistic Routing in Wireless Sensor Networks
Cited by: 7
Author(s): Ichrak Amdouni, Cédric Adjih, Nadjib Aitsaadi, Paul Mühlethaler
Software Mentions: 1
Published: over 6 years ago

10.3390/s18113804

Application of Improved Singular Spectrum Decomposition Method for Composite Fault Diagnosis of Gear Boxes
Cited by: 22
Author(s): Wenhua Du, Jie Zhou, Zhijian Wang, Ruiqin Li, Junyuan Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/s20236946

Sparse Blind Deconvolution with Nonconvex Optimization for Ultrasonic NDT Application
Cited by: 3
Author(s): Xuyang Gao, Yibing Shi, Kai Du, Qi Zhu, Wei Zhang
Software Mentions: 1
Published: about 4 years ago

10.1177/2331216517739745

Encoding a Melody Using Only Temporal Information for Cochlear-Implant and Normal-Hearing Listeners
Cited by: 11
Author(s): Ann E. Todd, Griet Mertens, Paul Van de Heyning, David M. Landsberger
Software Mentions: 1
Published: about 7 years ago

10.1186/1745-6215-9-58

Perioperative oxygen fraction – effect on surgical site infection and pulmonary complications after abdominal surgery: a randomized clinical trial. Rationale and design of the PROXI-Trial
Cited by: 35
Author(s): Christian S. Meyhoff, Jørn Wetterslev, Lars N. Jørgensen, Steen Winther Henneberg, Inger Simonsen, Therese Pulawska, Line R Walker, Nina Skovgaard, Kim Heltø, Peter Gocht-Jensen, P. Carlsson, H Rask, Sharaf Karim, Charlotte Green Carlsen, Frank Svendsen Jensen, Lars S. Rasmussen
Software Mentions: 1
Published: about 16 years ago

10.1186/s13063-018-2604-9

iSupport, an online training and support program for caregivers of people with dementia: study protocol for a randomized controlled trial in India
Cited by: 20
Author(s): Kala M. Mehta, Dolores Gallagher‐Thompson, Mathew Varghese, Santosh Loganathan, Upasana Baruah, Katrin Seeher, Diana Zandi, Tarun Dua, Anne Margriet Pot
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-020-04514-9

Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design
Cited by: 19
Author(s): Vicky Chalos, Rob A. van de Graaf, Bob Roozenbeek, Adriaan C.G.M. van Es, Heleen M. den Hertog, Julie Staals, Lukas van Dijk, Sjoerd F.M. Jenniskens, Robert J. van Oostenbrugge, Wim H. van Zwam, Yvo B.W.E.M. Roos, Charles B. L. M. Majoie, Hester F. Lingsma, Aad van der Lugt, Diederik W.J. Dippel
Software Mentions: 1
Published: over 4 years ago

10.1186/s13063-020-04522-9

Randomized placebo-controlled clinical trial investigating the effect of antioxidants and a vasodilator on overall safety and residual hearing preservation in cochlear implant patients
Cited by: 9
Author(s): Verena Scheper, Melanie Schmidtheisler, Florian Lasch, Heiko von der Leyen, Armin Koch, Jana Schwieger, Andreas Büchner, Anke Lesinski‐Schiedat, Thomas Lenarz
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00852-20

Dolosigranulum pigrum Cooperation and Competition in Human Nasal Microbiota
Cited by: 51
Author(s): Silvio D. Brugger, Sara M. Eslami, Melinda M. Pettigrew, Isabel F. Escapa, Matthew T. Henke, Yong Kong, Katherine P. Lemon
Software Mentions: 1
Published: about 4 years ago

10.1038/s41440-019-0237-3

Laparoscopic-based perivascular unilateral renal sympathetic nerve denervation for treating resistant hypertension: a case report
Cited by: 5
Author(s): Chuanyu Gao, Linwei Zhao, Lihua Zhu, Muwei Li, Degang Ding, Liu Z, Zhiqiang Fan, You Zhang, Wenli Zhao, Ji‐Guang Wang
Software Mentions: 1
Published: almost 6 years ago

10.1155/2013/107186

Hearing Preservation after Cochlear Implantation: UNICAMP Outcomes
Cited by: 9
Author(s): Guilherme Machado de Carvalho, Alexandre Caixeta Guimarães, Alexandre Scalli Mathias Duarte, Éder Barbosa Muranaka, Marcelo Naoki Soki, Renata S. Zanotello Martins, Walter Adriano Bianchini, Jorge Rizzato Paschoal, Arthur Menino Castilho
Software Mentions: 1
Published: almost 12 years ago

10.2196/humanfactors.6029

Development and Usability of REACH: A Tailored Theory-Based Text Messaging Intervention for Disadvantaged Adults With Type 2 Diabetes
Cited by: 64
Author(s): Lyndsay A. Nelson, Lindsay S. Mayberry, Kenneth A. Wallston, Sunil Kripalani, Erin M. Bergner, Chandra Y. Osborn
Software Mentions: 1
Published: over 8 years ago

10.2196/22031

The Generalizability of a Medication Administration Discrepancy Detection System: Quantitative Comparative Analysis
Cited by: 2
Author(s): Eric S. Kirkendall, Hannah Huth, Benjamin Rauenbuehler, Adam Moses, Kristin Melton, Yizhao Ni
Software Mentions: 1
Published: about 4 years ago