Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ggnetwork
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggnetwork
Geometries to Plot Networks with 'ggplot2'
5 versions
Latest release: over 1 year ago
11 dependent packages
3,868 downloads last month
Papers Mentioning ggnetwork 17
10.1128/mBio.01054-19
Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial SignaturesCited by: 28
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Simon Lax
Software Mentions: 18
Published: about 5 years ago
10.1128/mSphere.01023-20
Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome AssemblyCited by: 15
Author(s): Justinn Renelies‐Hamilton, Kristjan Germer, David Sillam‐Dussès, Kasun H. Bodawatta, Michael Poulsen
Software Mentions: 15
Published: over 3 years ago
10.3390/biom10121606
A Customizable Analysis Flow in Integrative Multi-OmicsCited by: 14
Author(s): Samuel M. Lancaster, Akshay Sanghi, Si Wu, M Snyder
Software Mentions: 15
Published: almost 4 years ago
10.12688/f1000research.8986.2
Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analysesCited by: 483
Author(s): Ben J. Callahan, Kris Sankaran, Julia Fukuyama, Paul J. McMurdie, Susan Holmes
Software Mentions: 13
Published: about 8 years ago
10.1128/mSystems.00068-21
Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean BasinsCited by: 14
Author(s): Elaina Thomas, R. Anderson, Viola Li, L Jenni Rogan, Julie A. Huber
Software Mentions: 11
Published: over 3 years ago
10.3389/fpls.2021.657796
Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in WheatCited by: 8
Author(s): Eva C Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean Michel Michno, Erin Gilbert, Feng Li, Marisa E. Miller, Chad L. Myers, Sean P. Gordon, John P. Vogel, Brian J. Steffenson, Shahryar F. Kianian, Cory D. Hirsch, Melania Figueroa
Software Mentions: 11
Published: over 3 years ago
10.1111/acel.12819
Gene expression-based drug repurposing to target agingCited by: 53
Author(s): Handan Melike Dönertaş, Matías Fuentealba, Linda Partridge, Janet M. Thornton
Software Mentions: 7
Published: over 6 years ago
10.1186/s40168-021-01070-5
Defining the resilience of the human salivary microbiota by a 520-day longitudinal study in a confined environment: the Mars500 missionCited by: 4
Author(s): Giovanni Bacci, Alessio Mengoni, Giovanni Emiliani, Carolina Chiellini, Edoardo Giovanni Cipriani, Giovanna Bianconi, Francesco Canganella, Renato Fani
Software Mentions: 6
Published: over 3 years ago
10.3390/pathogens10030258
Q Fever: Seroprevalence, Risk Factors in Slaughter Livestock and Genotypes of Coxiella burnetii in South AfricaCited by: 11
Author(s): Maruping L. Mangena, Nomakorinte Gcebe, Rian Pierneef, Peter N. Thompson, Abiodun A. Adesiyun
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-017-10930-w
Human hepatic gene expression signature of non-alcoholic fatty liver disease progression, a meta-analysisCited by: 69
Author(s): Maria Ryaboshapkina, Mårten Hammar
Software Mentions: 6
Published: about 7 years ago
10.1111/acel.13331
A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibitionCited by: 16
Author(s): Yahya Benslimane, María Sánchez-Osuna, Jasmin Coulombe-Huntington, Thierry Bertomeu, Danielle Henry, Caroline Huard, Éric Bonneil, Pierre Thibault, Mike Tyers, Lea Harrington
Software Mentions: 5
Published: over 3 years ago
10.1186/s13059-020-02050-y
Dynamic rewiring of the human interactome by interferon signalingCited by: 21
Author(s): Craig H. Kerr, Michael A. Skinnider, Daniel D. T. Andrews, Angel M. Madero, Queenie Chan, R. Greg Stacey, Nikolay Stoynov, Eric Jan, Leonard J. Foster
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-021-81447-6
Acetyl-CoA flux from the cytosol to the ER regulates engagement and quality of the secretory pathwayCited by: 16
Author(s): Inca A. Dieterich, Yusi Cui, Megan M. Braun, Alexis J. Lawton, Nicklaus H. Robinson, Jennifer L. Peotter, Qing Yu, Jason C. Casler, Benjamin S. Glick, Anjon Audhya, John M. Denu, Lingjun Li, Luigi Puglielli
Software Mentions: 5
Published: almost 4 years ago
10.5334/pb.1033
The Use of the Term Virtual Reality in Post-Stroke Rehabilitation: A Scoping Review and CommentaryCited by: 21
Author(s): Hanne Huygelier, Emily Mattheus, Vero Vanden Abeele, Raymond van Ee, Céline R. Gillebert
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.7200
Construct social‐behavioral association network to study management impact on waterbirds community ecology using digital video recording camerasCited by: 3
Author(s): Muhammad Awais Rasool, Xiaobo Zhang, Muhammad Azher Hassan, Tanveer Hussain, Ling Cai, Qing Zeng, Boyong Peng, Lei Wen, Guangchun Lei
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-84566-2
SNP-based analysis reveals unexpected features of genetic diversity, parental contributions and pollen contamination in a white spruce breeding programCited by: 9
Author(s): Esteban Galeano, Jean Bousquet, Barb R. Thomas
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-5899-3
Metagenomic analysis of bile salt biotransformation in the human gut microbiomeCited by: 43
Author(s): Dás P, Simonas Marcišauskas, Boyang Ji, Jens Nielsen
Software Mentions: 1
Published: over 5 years ago