Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.8986.2

https://doi.org/10.12688/f1000research.8986.2

Cited by: 483
Author(s): Ben J. Callahan, Kris Sankaran, Julia Fukuyama, Paul J. McMurdie, Susan Holmes
Published: over 7 years ago

Software Mentions 13

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ggnetwork
Geometries to Plot Networks with 'ggplot2'
Papers that mentioned: 17
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: github
An asynchronous python wrapper around the GitHub API
Papers that mentioned: 57
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207
pypi: Silva
Silva Content Management System
Papers that mentioned: 445