Papers: 10.3390/biom10121606
https://doi.org/10.3390/biom10121606
A Customizable Analysis Flow in Integrative Multi-Omics
Cited by: 14
Author(s): Samuel M. Lancaster, Akshay Sanghi, Si Wu, M Snyder
Published: over 4 years ago
Software Mentions 15
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
Very Likely Science (100)
Very Likely Science (78)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsPapers that mentioned: 155
Very Likely Science (100)
Very Likely Science (100)
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisPapers that mentioned: 367
Very Likely Science (100)
cran: COMBAT
A Combined Association Test for Genes using Summary StatisticsPapers that mentioned: 157
Very Likely Science (85)
Very Likely Science (100)
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and NetworksPapers that mentioned: 58
Very Likely Science (91)
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292
Very Likely Science (85)
Very Likely Science (100)
Very Likely Science (93)
Very Likely Science (100)
Very Likely Science (100)