Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fpls.2021.657796

https://doi.org/10.3389/fpls.2021.657796

Cited by: 8
Author(s): Eva C Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean Michel Michno, Erin Gilbert, Feng Li, Marisa E. Miller, Chad L. Myers, Sean P. Gordon, John P. Vogel, Brian J. Steffenson, Shahryar F. Kianian, Cory D. Hirsch, Melania Figueroa
Published: about 3 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: ggnetwork
Geometries to Plot Networks with 'ggplot2'
Papers that mentioned: 17
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: network
Classes for Relational Data
Papers that mentioned: 51
cran: sna
Tools for Social Network Analysis
Papers that mentioned: 67
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: network
A very simple networking library written by David Whale (@whaleygeek).
Papers that mentioned: 51
pypi: sna
Search N Act
Papers that mentioned: 67