cran: network | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0247002

Chainchecker: An application to visualise and explore transmission chains for Ebola virus disease
Cited by: 2
Author(s): Katy A. M. Gaythorpe, Aaron Morris, Natsuko Imai, Miles Stewart, Jeffrey S. Freeman, Mary J. Choi
Software Mentions: 19
Published: over 3 years ago

10.1186/s12859-018-2351-7

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool
Cited by: 36
Author(s): Deisy Morselli Gysi, André Voigt, Tiago de Miranda Fragoso, Eivind Almaas, Katja Nowick
Software Mentions: 17
Published: about 6 years ago

10.1128/mSphere.01023-20

Disentangling the Relative Roles of Vertical Transmission, Subsequent Colonizations, and Diet on Cockroach Microbiome Assembly
Cited by: 15
Author(s): Justinn Renelies‐Hamilton, Kristjan Germer, David Sillam‐Dussès, Kasun H. Bodawatta, Michael Poulsen
Software Mentions: 15
Published: over 3 years ago

10.3390/microorganisms7120680

EpiExploreR: A Shiny Web Application for the Analysis of Animal Disease Data
Cited by: 4
Author(s): Lara Savini, Luca Candeloro, Samuel Perticara, Annamaria Conte
Software Mentions: 14
Published: almost 5 years ago

10.1186/s12917-019-1962-1

Network analysis of dairy cattle movement and associations with bovine tuberculosis spread and control in emerging dairy belts of Ethiopia
Cited by: 21
Author(s): Getnet Abie Mekonnen, Gobena Ameni, James Wood, Stefan Berg, Andrew J. K. Conlan
Software Mentions: 13
Published: over 5 years ago

10.1177/0271678X17713901

Modified structural network backbone in the contralesional hemisphere chronically after stroke in rat brain
Cited by: 21
Author(s): Michel R.T. Sinke, Willem M. Otte, Maurits Pa van Meer, Annette van der Toorn, Rick M. Dijkhuizen
Software Mentions: 13
Published: over 7 years ago

10.3389/fgene.2020.00968

Systematic Transcriptome Analysis of Noise-Induced Hearing Loss Pathogenesis Suggests Inflammatory Activities and Multiple Susceptible Molecules and Pathways
Cited by: 6
Author(s): Quan Wang, Yilin Shen, Hongbo Hu, Fan Cui, Andi Zhang, Rui Ding, Bin Ye, Ming Xiang
Software Mentions: 12
Published: about 4 years ago

10.2196/11652

Using Partially-Observed Facebook Networks to Develop a Peer-Based HIV Prevention Intervention: Case Study
Cited by: 7
Author(s): Aditya Khanna, Steven M. Goodreau, Stuart Michaels, John A. Schneider
Software Mentions: 12
Published: about 6 years ago

10.1007/s00429-018-1628-y

Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics
Cited by: 61
Author(s): Michel R.T. Sinke, Willem M. Otte, Daan Christiaens, Oliver Schmitt, Alexander Leemans, Annette van der Toorn, R. Angela Sarabdjitsingh, Marian Joëls, Rick M. Dijkhuizen
Software Mentions: 12
Published: over 6 years ago

10.3389/fpls.2021.657796

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
Cited by: 8
Author(s): Eva C Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean Michel Michno, Erin Gilbert, Feng Li, Marisa E. Miller, Chad L. Myers, Sean P. Gordon, John P. Vogel, Brian J. Steffenson, Shahryar F. Kianian, Cory D. Hirsch, Melania Figueroa
Software Mentions: 11
Published: over 3 years ago

10.3389/fpubh.2021.649190

Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean
Cited by: 2
Author(s): Mariana Geffroy, Nonito Pagès, David Chavernac, Alexis Dereeper, L. Aubert, Cécile Herrmann-Storck, Anubis Vega-Rúa, Sylvie Lecollinet, Jennifer Pradel
Software Mentions: 11
Published: over 3 years ago

10.1038/s41598-019-56288-z

Interactions with humans are jointly influenced by life history stage and social network factors and reduce group cohesion in moor macaques (Macaca maura)
Cited by: 26
Author(s): Kristen S. Morrow, Hunter Glanz, Putu Oka Ngakan, Erin P. Riley
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0204990

Blaunet: An R-based graphical user interface package to analyze Blau space
Cited by: 4
Author(s): Michael Genkin, Cheng Wang, George Berry, Matthew E. Brashears
Software Mentions: 9
Published: about 6 years ago

10.1093/bib/bbaa290

NetCoMi: network construction and comparison for microbiome data in R
Cited by: 165
Author(s): Stefanie Peschel, Christian L. Müller, Erika von Mutius, Anne‐Laure Boulesteix, Martin Depner
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0028913

High Connectivity in the Deepwater Snapper Pristipomoides filamentosus (Lutjanidae) across the Indo-Pacific with Isolation of the Hawaiian Archipelago
Cited by: 73
Author(s): Michelle R. Gaither, Shelley A. Jones, Christopher Kelley, Stephen J. Newman, Laurie Sorenson, Brian W. Bowen
Software Mentions: 7
Published: almost 13 years ago

10.1186/s12918-018-0581-y

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
Cited by: 49
Author(s): Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-014-0204-1

Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
Cited by: 16
Author(s): R. O. Slatyer, M. Nash, Adam D. Miller, Yoshinori Endo, Kate D. L. Umbers, Ary A. Hoffmann
Software Mentions: 6
Published: about 10 years ago

10.1111/mec.13112

Contrasting population genetic structure among freshwater‐resident and anadromous lampreys: the role of demographic history, differential dispersal and anthropogenic barriers to movement
Cited by: 52
Author(s): Fiona S. A. Bracken, A. Rus Hoelzel, John B. Hume, Martyn C. Lucas
Software Mentions: 6
Published: over 9 years ago

10.3389/fmicb.2016.00374

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy
Cited by: 34
Author(s): S. Emil Ruff, Hanna Kuhfuß, Gunter Wegener, Christian Lott, Alban Ramette, Johanna Wiedling, Katrin Knittel, Miriam Weber
Software Mentions: 5
Published: over 8 years ago

10.1186/1471-2164-13-351

The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon
Cited by: 38
Author(s): Kusum Sharma, Nicholas Gillum, J Lomax Boyd, Amy K. Schmid
Software Mentions: 5
Published: over 12 years ago

10.3389/fpls.2017.01923

Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple
Cited by: 66
Author(s): Jorge Urrestarazu, Hélène Muranty, Caroline Denancé, Diane Leforestier, Elisa Ravon, Arnaud Guyader, Rémi Guisnel, Laurence Feugey, Santiago P. Aubourg, Jean Marc Celton, Nicolas Daccord, Luca Dondini, Roberto Gregori, M. Lateur, Patrick Houben, Matthew Ordidge, F. Paprštein, J. Sedlák, Hilde Nybom, Larisa Garkava-Gustavsson, Michela Troggio, Luca Bianco, Riccardo Velasco, Charles Poncet, Anthony Théron, Shigeki Moriya, M.C.A.M. Bink, François Laurens, Stefano Tartarini, Charles Eric Durel
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2019.02683

Differential Expression of Signaling Pathway Genes Associated With Aflatoxin Reduction Quantitative Trait Loci in Maize (Zea mays L.)
Cited by: 6
Author(s): Felicia Parish, W. Paul Williams, Gary L. Windham, Xueyan Shan
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.5751

Using co‐occurrence network topology in assessing ecological stress in benthic macroinvertebrate communities
Cited by: 2
Author(s): Ariel Levi Simons, Raphael D. Mazor, Susanna Theroux
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.566569

EAT-UpTF: Enrichment Analysis Tool for Upstream Transcription Factors of a Group of Plant Genes
Cited by: 4
Author(s): Sangrea Shim, Pil Joon Seo
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2015.01511

High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes
Cited by: 43
Author(s): Marion Stagars, S. Emil Ruff, Rudolf Amann, Katrin Knittel
Software Mentions: 4
Published: almost 9 years ago

10.3389/fonc.2020.624752

Down-Regulation of Long Non-Coding RNA TINCR Induces Cell Dedifferentiation and Predicts Progression in Oral Squamous Cell Carcinoma
Cited by: 6
Author(s): Zerui Zhuang, Jing Huang, Weiwang Wang, Cheng Wang, Pei Yu, Jing Hu, Haichao Liu, Hanqi Yin, Jinsong Hou, Xiqiang Liu
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-85179-5

A systematic review with network meta-analysis on mono strategy of anaesthesia for preeclampsia in caesarean section
Cited by: 1
Author(s): Chao Cheng, Alan Hsi-Wen Liao, Chien‐Yu Chen, Yu-Cih Lin, Yi‐No Kang
Software Mentions: 4
Published: over 3 years ago

10.2196/18714

Type 1 Diabetes Mellitus Virtual Patient Network as a Peer Support Community: Protocol for Social Network Analysis and Content Analysis
Cited by: 8
Author(s): Nancy Wu, Anne‐Sophie Brazeau, Meranda Nakhla, Deborah Chan, Deborah Da Costa, Geetha Mukerji, Sonia Butalia, Danièle Pacaud, Mélanie Henderson, Constadina Panagiotopoulos, Elham Rahme, Kaberi Dasgupta
Software Mentions: 4
Published: about 4 years ago

10.2196/27214

Google Trends for Pain Search Terms in the World’s Most Populated Regions Before and After the First Recorded COVID-19 Case: Infodemiological Study
Cited by: 13
Author(s): Istvan S. Szilagyi, Torsten Ullrich, Kordula Lang-Illievich, Christoph Klivinyi, Gregor Alexander Schittek, Holger Simonis, Helmar Bornemann‐Cimenti
Software Mentions: 4
Published: over 3 years ago

10.3389/fpsyt.2019.00691

Abnormal Alpha Rhythm During Self-Referential Processing in Schizophrenia Patients
Cited by: 9
Author(s): Shikui Jia, Miaomiao Liu, Pei-Wen Huang, Yanli Zhao, Shuping Tan, Ritsu Go, Tianyi Yan, Jinglong Wu
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-15795-7

Intelligence is associated with the modular structure of intrinsic brain networks
Cited by: 95
Author(s): Kirsten Hilger, Matthias Ekman, Christian J. Fiebach, Ulrike Basten
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.4872

Genetic differentiation and asymmetric gene flow among Carpathian brown bear (<i>Ursus arctos</i>) populations—Implications for conservation of transboundary populations
Cited by: 11
Author(s): Maciej Matosiuk, Wojciech Śmietana, Magdalena Czajkowska, Ladislav Paule, Jozef Štofík, Diana Krajmerová, Andriy‐Taras Bashta, Stefan Jakimiuk, Mirosław Ratkiewicz
Software Mentions: 3
Published: almost 6 years ago

10.1111/eva.12455

Hidden diversity and phylogeographic history provide conservation insights for the edible seaweed<i>Sargassum fusiforme</i>in the Northwest Pacific
Cited by: 30
Author(s): Zi Min Hu, Jing Jing Li, Zhong Min Sun, Xu Gao, Jincao Yao, Han Ho Choi, Hikaru Endo, Deli Duan
Software Mentions: 3
Published: over 7 years ago

10.3390/biology10080762

Meta-Analysis of Mitochondrial DNA Control Region Diversity to Shed Light on Phylogenetic Relationship and Demographic History of African Sheep (Ovis aries) Breeds
Cited by: 9
Author(s): George Wanjala, Zoltán Bagi, Szilvia Kusza
Software Mentions: 3
Published: about 3 years ago

10.1186/s13068-021-01913-1

Effluent solids recirculation to municipal sludge digesters enhances long-chain fatty acids degradation capacity
Cited by: 9
Author(s): Sepehr Shakeri Yekta, Tong Liu, Thuane Mendes Anacleto, Mette Axelsson Bjerg, Luka Šafarič, Xavier Goux, Anna Karlsson, Annika Björn, Anna Schnürer
Software Mentions: 3
Published: over 3 years ago

10.3390/biomedicines9081042

177Lu-PSMA Radioligand Therapy Is Favorable as Third-Line Treatment of Patients with Metastatic Castration-Resistant Prostate Cancer. A Systematic Review and Network Meta-Analysis of Randomized Controlled Trials
Cited by: 10
Author(s): Finn Edler von Eyben, Kalevi Kairemo, Sean A. Fletcher, Manuela Andrea Hoffmann, Giovanni Paganelli, Irene Virgolini, Giandomenico Roviello
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-017-03470-w

Intracellular targeting of annexin A2 inhibits tumor cell adhesion, migration, and in vivo grafting
Cited by: 34
Author(s): Daniela I. Staquicini, Roberto Rangel, Liliana Guzmán-Rojas, Fernanda I. Staquicini, Andrey S. Dobroff, Christy A. Tarleton, Michelle A. Ozbun, Mikhail G. Kolonin, Juri G. Gelovani, Serena Marchiò, Richard L. Sidman, Katherine A. Hajjar, Wadih Arap, Renata Pasqualini
Software Mentions: 2
Published: over 7 years ago

10.1098/rsob.170224

Pigment-Dispersing Factor-expressing neurons convey circadian information in the honey bee brain
Cited by: 35
Author(s): Katharina Beer, Esther Kolbe, Noa B. Kahana, Nadav Yayon, Ron Weiss, Pamela Menegazzi, Guy Bloch, Charlotte Helfrich‐Förster
Software Mentions: 2
Published: almost 7 years ago

10.3390/s19092005

Parallel Transmission of Distributed Sensor Based on SCTP and TCP for Heterogeneous Wireless Networks in IoT
Cited by: 4
Author(s): Weifeng Sun, Shumiao Yu, Yuanxun Xing, Zhenquan Qin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0024642

Multimodal Functional Network Connectivity: An EEG-fMRI Fusion in Network Space
Cited by: 47
Author(s): Xu Lei, Dirk Ostwald, Jiehui Hu, Chuan Qiu, Camillo Porcaro, Andrew P. Bagshaw, Dezhong Yao
Software Mentions: 2
Published: about 13 years ago

10.1007/s00122-017-2956-7

Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations
Cited by: 43
Author(s): Renaud Rincent, Alain Charcosset, Laurence Moreau
Software Mentions: 2
Published: about 7 years ago

10.3389/fchem.2021.633870

A Metabolomics and Molecular Networking Approach to Elucidate the Structures of Secondary Metabolites Produced by Serratia marcescens Strains
Cited by: 18
Author(s): Tanya Clements, Marina Rautenbach, Thando Ndlovu, S. Ajmal Khan, Wesaal Khan
Software Mentions: 2
Published: over 3 years ago

10.1186/s12862-015-0535-6

Being cosmopolitan: evolutionary history and phylogeography of a specialized raptor, the Osprey Pandion haliaetus
Cited by: 28
Author(s): Flavio Monti, Olivier Duriez, Véronique Arnal, Jean-Marie Dominici, Andrea Sforzi, Leonida Fusani, David Grémillet, Claudine Montgelard
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijerph13111143

Whole of Systems Trial of Prevention Strategies for Childhood Obesity: WHO STOPS Childhood Obesity
Cited by: 80
Author(s): Steven Allender, Lynne Millar, Peter S. Hovmand, Colin Bell, Marj Moodie, Rob Carter, Boyd Swinburn, Claudia Strugnell, Janette Lowe, Kayla de la Haye, Liliana Orellana, Sue Morgan
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0062578

Quantitatively Different, yet Qualitatively Alike: A Meta-Analysis of the Mouse Core Gut Microbiome with a View towards the Human Gut Microbiome
Cited by: 172
Author(s): Łukasz Krych, Camilla Hartmann Friis Hansen, Axel Kornerup Hansen, Frans van den Berg, Dennis Sandris Nielsen
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0074859

Haplotype Variation of Glu-D1 Locus and the Origin of Glu-D1d Allele Conferring Superior End-Use Qualities in Common Wheat
Cited by: 16
Author(s): Zhenying Dong, Yan Yang, Yiwen Li, Kunpu Zhang, Haijuan Lou, Xianghai An, Lingli Dong, Yong Gu, Olin D. Anderson, Xin Liu, Huanju Qin, Daowen Wang
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0180766

Development of a new set of molecular markers for examining Glu-A1 variants in common wheat and ancestral species
Cited by: 4
Author(s): Zhenying Dong, Yan Yang, Kunpu Zhang, Yiwen Li, Junjun Wang, Zhaojun Wang, Xin Liu, Huanju Qin, Daowen Wang
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.01406

Multilocus Sequence Typing of Enterocytozoon bieneusi Isolates From Various Mammal and Bird Species and Assessment of Population Structure and Substructure
Cited by: 5
Author(s): Xiaohua Liu, Yanchen Wu, Fengkun Yang, Baiyan Gong, Yanyan Jiang, Kexin Zhou, Jianping Cao, Weizhe Zhang, Aiqin Liu, Yujuan Shen
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2148-7-120

Evolution of Class I cytokine receptors
Cited by: 124
Author(s): Clifford Liongue, Alister C. Ward
Software Mentions: 2
Published: almost 18 years ago

10.3390/pathogens10080916

Temporal Changes in the Genetic Diversity of Plasmodium vivax Merozoite Surface Protein-1 in Myanmar
Cited by: 5
Author(s): Haung Naw, Jung‐Mi Kang, Mya Moe, Jin Young Lee, Hương Giang Lê, Tuấn Cường Võ, Yi Yi Mya, Moe Kyaw Myint, Zaw Than Htun, Tong‐Soo Kim, Ho‐Joon Shin, Byoung-Kuk Na
Software Mentions: 2
Published: over 3 years ago

10.1097/MD.0000000000001745

Clinical Outcomes of Revascularization Strategies for Patients With MVD/LMCA Disease
Cited by: 4
Author(s): Meng-Kan Fan, Yamin Su, Xiaojing Cai, Zhoushan Gu, Hao Geng, Haiyan Pan, Jiang Zhu, Min Pan
Software Mentions: 2
Published: about 9 years ago

Projects: cran: network

Papers Mentioning network 51