Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1084/jem.20210915

https://doi.org/10.1084/jem.20210915

Cited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Published: over 2 years ago

Software Mentions 27

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: qusage
qusage: Quantitative Set Analysis for Gene Expression
Papers that mentioned: 4
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: arules
Mining Association Rules and Frequent Itemsets
Papers that mentioned: 42
cran: Boruta
Wrapper Algorithm for All Relevant Feature Selection
Papers that mentioned: 192
cran: caret
Classification and Regression Training
Papers that mentioned: 630
cran: COMBAT
A Combined Association Test for Genes using Summary Statistics
Papers that mentioned: 157
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: gbm
Generalized Boosted Regression Models
Papers that mentioned: 250
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
cran: ranger
A Fast Implementation of Random Forests
Papers that mentioned: 91
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
pypi: arules
multi-purpose association rules analysis
Papers that mentioned: 42
pypi: Boruta
Python Implementation of Boruta Feature Selection
Papers that mentioned: 192
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
pypi: gbm
Read and analyze GBM data
Papers that mentioned: 250
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: ranger
A Python package for the manipulation of Range objects
Papers that mentioned: 91
pypi: Reuters
Reuters ticker information retriever for Python
Papers that mentioned: 14