cran: pROC | Projects | Ecosyste.ms: Papers

10.3390/ijms22063251

Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
Cited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: almost 4 years ago

10.1186/s13073-021-00910-1

Landscape and selection of vaccine epitopes in SARS-CoV-2
Cited by: 21
Author(s): Christof C. Smith, Kelly Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric D. Routh, Julia Kodysh, Timothy J. O’Donnell, Carsten Haber, Kirsten Heiß, Volker Stadler, Erik Garrison, Adam Sandor, Jenny P.-Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark T. Heise, Benjamin G. Vincent, Alex Rubinsteyn
Software Mentions: 27
Published: over 3 years ago

10.1084/jem.20210915

Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosis
Cited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Software Mentions: 27
Published: over 3 years ago

10.1155/2021/8020879

Novel lncRNA Panel as for Prognosis in Esophageal Squamous Cell Carcinoma Based on ceRNA Network Mechanism
Cited by: 10
Author(s): Jin Zhang, Fei Xiao, Guangliang Qiang, Zhenrong Zhang, Qianli Ma, Hao Yang, H. Rosie Xing, Chaoyang Liang
Software Mentions: 22
Published: about 3 years ago

10.1093/gigascience/giaa010

Interpretable and accurate prediction models for metagenomics data
Cited by: 29
Author(s): Edi Prifti, Yann Chevaleyre, Blaise Hanczar, Eugeni Belda, Antoine Danchin, Karine Clément, Jean-Daniel Zucker
Software Mentions: 18
Published: almost 5 years ago

10.1093/gigascience/giz028

Rice Galaxy: an open resource for plant science
Cited by: 13
Author(s): Venice Margarette Juanillas, Alexis Dereeper, Nicolas Beaume, Gaëtan Droc, Joshua Gregor A. Dizon, J. Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay R. Triplett, Jillian M. Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E. Leach, Manuel Ruiz, Michael J. Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil Mauleon
Software Mentions: 18
Published: over 5 years ago

10.18632/aging.103499

Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissue
Cited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Software Mentions: 18
Published: over 4 years ago

10.1186/s12889-021-11267-w

Influence of chronic hepatitis C infection on the monocyte-to-platelet ratio: data analysis from the National Health and Nutrition Examination Survey (2009–2016)
Cited by: 1
Author(s): Aidan M. Nikiforuk, Mohammad Ehsanul Karim, David M. Patrick, Agatha Jassem
Software Mentions: 18
Published: over 3 years ago

10.1186/s12920-015-0114-0

Integrated network analysis and logistic regression modeling identify stage-specific genes in Oral Squamous Cell Carcinoma
Cited by: 12
Author(s): Vinay Randhawa, Vishal Acharya
Software Mentions: 17
Published: over 9 years ago

10.15252/msb.20188636

Unsupervised identification of disease states from high‐dimensional physiological and histopathological profiles
Cited by: 11
Author(s): Kenichi Shimada, Timothy J. Mitchison
Software Mentions: 17
Published: almost 6 years ago

10.3389/fonc.2021.690129

A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric Cancer
Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Software Mentions: 16
Published: over 3 years ago

10.1186/1472-6947-13-126

Evaluation of prediction models for the staging of prostate cancer
Cited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: about 11 years ago

10.1371/journal.pntd.0007969

Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection
Cited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: almost 5 years ago

10.3389/fpsyg.2021.627561

Automatic Facial Expression Recognition in Standardized and Non-standardized Emotional Expressions
Cited by: 41
Author(s): Theresa Küntzler, T. Tim A. Höfling, Georg W. Alpers
Software Mentions: 16
Published: over 3 years ago

10.3389/fneur.2019.01366

Prediction of Early TBI Mortality Using a Machine Learning Approach in a LMIC Population
Cited by: 39
Author(s): Robson Luís Oliveira de Amorim, Louise Makarem Oliveira, Luis Marcelo Malbouisson, Márcia Mitie Nagumo, Marcela Simoes, Leandro Miranda, Edson Bor‐Seng‐Shu, André Beer‐Furlan, Almir Ferreira de Andrade, Andrés M. Rubiano, Manoel Jacobsen Teixeira, Angelos G. Kolias, Wellingson Silva Paiva
Software Mentions: 15
Published: almost 5 years ago

10.3390/cancers13123089

A Comprehensive Bioinformatics Analysis of Notch Pathways in Bladder Cancer
Cited by: 12
Author(s): Chuan Zhang, Mandy Berndt‐Paetz, Jochen Neuhaus
Software Mentions: 15
Published: over 3 years ago

10.1128/mBio.02120-17

Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn’s Disease Patients
Cited by: 95
Author(s): Matthew K. Doherty, Tao Ding, Charlie C. Koumpouras, Shannon Telesco, Calixte S. Monast, Anuk Das, Carrie Brodmerkel, Patrick D. Schloss
Software Mentions: 15
Published: over 6 years ago

10.1186/s12967-021-02894-3

Identification of immune subtypes of cervical squamous cell carcinoma predicting prognosis and immunotherapy responses
Cited by: 8
Author(s): Yimin Li, Shun Lü, Shubin Wang, Xinhao Peng, Jinyi Lang
Software Mentions: 14
Published: over 3 years ago

10.1038/s41375-018-0360-1

Immune cell constitution in bone marrow microenvironment predicts outcome in adult ALL
Cited by: 39
Author(s): Helena Hohtari, Oscar Brück, Sami Blom, Riku Turkki, Marjatta Sinisalo, Panu E. Kovanen, Olli Kallioniemi, Teijo Pellinen, Kimmo Porkka, Satu Mustjoki
Software Mentions: 14
Published: almost 6 years ago

10.3389/fonc.2020.575422

A Novel Model Based on CXCL8-Derived Radiomics for Prognosis Prediction in Colorectal Cancer
Cited by: 8
Author(s): Yanpeng Chu, Jie Li, Zong Yuan Zeng, Bin Huang, Jiaojiao Zhao, Qin Liu, Huaping Wu, Jiangping Fu, Zheng Yin, Yefan Zhang, Jianqiang Cai, Fanxin Zeng
Software Mentions: 14
Published: about 4 years ago

10.1186/s12859-021-04261-x

Machine learning-based prediction of survival prognosis in cervical cancer
Cited by: 16
Author(s): Dongyan Ding, Tingyuan Lang, Dongling Zou, Jianrong Tan, Jia Chen, Lei Zhou, Dong Wang, Rong Li, Yunzhe Li, Jingshu Liu, Cui Ma, Qi Zhou
Software Mentions: 14
Published: over 3 years ago

10.3389/fgene.2021.702072

Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic Cancer
Cited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: over 3 years ago

10.3390/ijms22073681

Circulating miRNAs as Biomarkers for Mitochondrial Neuro-Gastrointestinal Encephalomyopathy
Cited by: 4
Author(s): Mark Mencias, Michelle Levene, Kevin Blighe, Bridget E. Bax
Software Mentions: 14
Published: over 3 years ago

10.1155/2020/8833972

An Epithelial-Mesenchymal Transition (EMT) Preoperative Nomogram for Prediction of Lymph Node Metastasis in Bladder Cancer (BLCA)
Cited by: 5
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 14
Published: about 4 years ago

10.1002/bjs5.50138

Global variation in anastomosis and end colostomy formation following left‐sided colorectal resection
Cited by: 16
Author(s): GlobalSurg Collaborative
Software Mentions: 13
Published: almost 6 years ago

10.1038/s41598-020-78747-8

Non-invasive assessment of skeletal muscle fibrosis in mice using nuclear magnetic resonance imaging and ultrasound shear wave elastography
Cited by: 6
Author(s): Aurea B. Martins-Bach, Damien Bachasson, E. Araujo, Lucas Soustelle, Paulo Loureiro de Sousa, Y. Fromes, Pierre Carlier
Software Mentions: 13
Published: almost 4 years ago

10.1186/s12917-019-1962-1

Network analysis of dairy cattle movement and associations with bovine tuberculosis spread and control in emerging dairy belts of Ethiopia
Cited by: 21
Author(s): Getnet Abie Mekonnen, Gobena Ameni, James Wood, Stefan Berg, Andrew J. K. Conlan
Software Mentions: 13
Published: over 5 years ago

10.1371/journal.pone.0242502

Timeliness of immunisation with the pentavalent vaccine at different levels of the health care system in the Lao People’s Democratic Republic: A cross-sectional study
Cited by: 3
Author(s): Lisa Hefele, Sengdavanh Syphan, Dalouny Xayavong, Anousin Homsana, Daria Kleine, Phetsavanh Chanthavilay, Phonethipsavanh Nouanthong, Kinnaly Xaydalasouk, Outavong Phathammavong, Somxay Billamay, Anonh Xeuatvongsa, Daniel Reinharz, Antony P. Black, Claude P. Muller
Software Mentions: 13
Published: about 4 years ago

10.3389/fimmu.2021.709493

Development of a Novel Immune Infiltration-Based Gene Signature to Predict Prognosis and Immunotherapy Response of Patients With Cervical Cancer
Cited by: 12
Author(s): Sihui Yu, Xi Li, Jiawen Zhang, Sufang Wu
Software Mentions: 13
Published: over 3 years ago

10.3389/fonc.2020.01767

Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer
Cited by: 6
Author(s): Florian Weiland, Noor A. Lokman, Manuela Klingler‐Hoffmann, Thomas W. Jobling, Andrew N. Stephens, Karin Sundfeldt, Peter Hoffmann, Martin K. Oehler
Software Mentions: 13
Published: about 4 years ago

10.1371/journal.pone.0199277

Predictive performance of six mortality risk scores and the development of a novel model in a prospective cohort of patients undergoing valve surgery secondary to rheumatic fever
Cited by: 13
Author(s): Omar Asdrúbal Vilca Mejía, Manuel J. Antunes, Maxim Goncharov, Luís Alberto Oliveira Dallan, Elinthon Tavares Veronese, Gisele Aparecida Lapenna, Luiz Augusto Ferreira Lisboa, Carlos Manuel de Almeida Brandão, Jorge P. Zubelli, Flávio Tarasoutchi, Pablo Maria Alberto Pomerantzeff, Fábio Biscegli Jatene
Software Mentions: 13
Published: over 6 years ago

10.1371/journal.pone.0159046

Accuracy and Calibration of Computational Approaches for Inpatient Mortality Predictive Modeling
Cited by: 13
Author(s): Christos T. Nakas, Narayan Schütz, Marcus Werners, Alexander Benedikt Leichtle
Software Mentions: 13
Published: over 8 years ago

10.3934/mbe.2020007

Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
Cited by: 1
Author(s): Yonghua Zhuang, Kristen J. Wade, Laura Saba, Katerina Kechris
Software Mentions: 13
Published: almost 5 years ago

10.3389/fgene.2020.00620

An Analysis Regarding the Association Between the ISLR Gene and Gastric Carcinogenesis
Cited by: 13
Author(s): Shu Li, Wei Zhao, Manyi Sun
Software Mentions: 13
Published: over 4 years ago

10.3389/fgene.2020.00968

Systematic Transcriptome Analysis of Noise-Induced Hearing Loss Pathogenesis Suggests Inflammatory Activities and Multiple Susceptible Molecules and Pathways
Cited by: 6
Author(s): Quan Wang, Yilin Shen, Hongbo Hu, Fan Cui, Andi Zhang, Rui Ding, Bin Ye, Ming Xiang
Software Mentions: 12
Published: over 4 years ago

10.1186/s12911-017-0500-y

Predicting two-year survival versus non-survival after first myocardial infarction using machine learning and Swedish national register data
Cited by: 53
Author(s): John Wallert, Mattia Tomasoni, Guy Madison, Claes Held
Software Mentions: 12
Published: over 7 years ago

10.1371/journal.pone.0207491

Feature selection and prediction of treatment failure in tuberculosis
Cited by: 30
Author(s): Christopher Martin Sauer, David Sasson, Kenneth E. Paik, Ned McCague, Leo Anthony Celi, Iván Sánchez Fernández, Ben Illigens
Software Mentions: 12
Published: about 6 years ago

10.1371/journal.pone.0204123

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures
Cited by: 8
Author(s): Inna Y. Gong, Natalie S. Fox, Vincent Huang, Paul C. Boutros
Software Mentions: 12
Published: over 6 years ago

10.1002/cam4.2786

FOLFOX treatment response prediction in metastatic or recurrent colorectal cancer patients via machine learning algorithms
Cited by: 24
Author(s): Wei Lu, Dongliang Fu, Xianglong Kong, Zhiheng Huang, Maxwell Hwang, Yaowu Zhu, Liubo Chen, Kai Jiang, Xinlin Li, Yihua Wu, Jun Li, Ying Yuan, Kefeng Ding
Software Mentions: 12
Published: almost 5 years ago

10.3389/fonc.2020.596822

Predictive Model and Precaution for Oral Mucositis During Chemo-Radiotherapy in Nasopharyngeal Carcinoma Patients
Cited by: 10
Author(s): Peijing Li, Kaixin Li, Tengchuan Jin, Hua Lin, Jun Fang, Shengchun Yang, Wei‐Chih Shen, Jia Chen, Jiang Zhang, Xiaozhong Chen, Ming Chen, Yuanyuan Chen
Software Mentions: 12
Published: about 4 years ago

10.1186/s12885-021-08442-y

Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patients
Cited by: 9
Author(s): Xingjie Gao, Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Yuanyuan Ren, Chao Su, Shaoyuan Wu, Zhi Yao, Jie Yang
Software Mentions: 12
Published: over 3 years ago

10.7717/peerj.10849

modelBuildR: an R package for model building and feature selection with erroneous classifications
Cited by: 3
Author(s): Maximilian Knoll, Jennifer Furkel, Jürgen Debus, Amir Abdollahi
Software Mentions: 12
Published: almost 4 years ago

10.3389/fgene.2019.01200

Dysregulation of MicroRNA Regulatory Network in Lower Extremities Arterial Disease
Cited by: 22
Author(s): Anna Bogucka‐Kocka, Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki
Software Mentions: 12
Published: about 5 years ago

10.1038/srep26451

Glycosyltransferase Gene Expression Profiles Classify Cancer Types and Propose Prognostic Subtypes
Cited by: 52
Author(s): Jahanshah Ashkani, Kevin J. Naidoo
Software Mentions: 12
Published: over 8 years ago

10.1111/jcmm.16605

Leptin receptor is a key gene involved in the immunopathogenesis of thyroid‐associated ophthalmopathy
Cited by: 3
Author(s): Ziyi Chen, Zhe Chen, Jingya Wang, Meng Zhang, Xiaofei Wang, Deji Cuomu, Bingyin Shi, Yue Wang
Software Mentions: 12
Published: over 3 years ago

10.3389/fphar.2021.726529

CD3D, GZMK, and KLRB1 Are Potential Markers for Early Diagnosis of Rheumatoid Arthritis, Especially in Anti-Citrullinated Protein Antibody-Negative Patients
Cited by: 8
Author(s): Junqin Lu, Yihui Bi, Yapeng Zhu, Hanyu Shi, Wenxiu Duan, Jian Zhou
Software Mentions: 12
Published: over 3 years ago

10.1111/gcb.15637

Impacts of climate change on aquatic insects in temperate alpine regions: Complementary modeling approaches applied to Swiss rivers
Cited by: 6
Author(s): Pablo Timoner, Marc Fasel, Seyed Saeid Ashraf Vaghefi, Pierre Marle, Emmanuel Castella, Frédéric Moser, Anthony Lehmann
Software Mentions: 12
Published: over 3 years ago

10.1186/s40560-021-00531-1

Development and validation of an online model to predict critical COVID-19 with immune-inflammatory parameters
Cited by: 7
Author(s): Yue Gao, Lingxi Chen, Jianhua Chi, Shaoqing Zeng, Xikang Feng, Huayi Li, Dan Liŭ, Xiang Feng, Siyuan Wang, Ya Wang, Rui Yu, Yuan Yuan, Sen Xu, Chunrui Li, Wei Zhang, Shuai Cheng Li, Qinglei Gao
Software Mentions: 12
Published: almost 4 years ago

10.3390/diagnostics11081517

Prediction Model for Tumor Budding Status Using the Radiomic Features of F-18 Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography in Cervical Cancer
Cited by: 5
Author(s): Gun Oh Chong, Shin‐Hyung Park, Shin Young Jeong, Su Jeong Kim, Nora Jee-Young Park, Yoon Hee Lee, Sang‐Woo Lee, Dae Gy Hong, Ji Young Park, Hyung Soo Han
Software Mentions: 11
Published: over 3 years ago

10.2196/25124

Enhancing Obstructive Sleep Apnea Diagnosis With Screening Through Disease Phenotypes: Algorithm Development and Validation
Cited by: 2
Author(s): Daniela Ferreira-Santos, Pedro Pereira Rodrigues
Software Mentions: 11
Published: over 3 years ago

10.1155/2021/6664386

Hypoxia Molecular Characterization in Hepatocellular Carcinoma Identifies One Risk Signature and Two Nomograms for Clinical Management
Cited by: 23
Author(s): Xinwei Han, Long Liu, Taoyuan Lu, Libo Wang, Zhaonan Li, Dechao Jiao, Xinwei Han
Software Mentions: 11
Published: almost 4 years ago

10.1186/cc13993

Relationship between acid–base status and inflammation in the critically ill
Cited by: 38
Author(s): Fernando Godinho Zampieri, John A. Kellum, Marcelo Park, Otávio T. Ranzani, Hermes Vieira Barbeiro, Heraldo Possolo de Souza, Luiz Monteiro da Cruz Neto, Fabiano Pinheiro da Silva
Software Mentions: 11
Published: almost 11 years ago

10.3389/fphys.2021.714195

Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine Learning
Cited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: over 3 years ago

10.3390/cells10020322

Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region
Cited by: 7
Author(s): Piotr Gawroński, Christel Enroth, Peter Kindgren, Sebastian Marquardt, Stanisław Karpiński, Dario Leister, Poul Erik Jensen, Jeppe Vinther, Lars B. Scharff
Software Mentions: 11
Published: almost 4 years ago

10.1371/journal.pone.0207126

Prognostic function to estimate the probability of meaningful clinical improvement after surgery - Results of a prospective multicenter observational cohort study on patients with lumbar spinal stenosis
Cited by: 20
Author(s): Ulrike Held, Jakob M Burgstaller, Maria M. Wertli, Giuseppe Pichierri, Sebastian Winklhofer, Florian Brunner, François Porchet, Mazda Farshad, Johann Steurer
Software Mentions: 11
Published: about 6 years ago

10.3389/fcell.2021.621618

Functional Assessment of Four Novel Immune-Related Biomarkers in the Pathogenesis of Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Daojun Lv, Xiangkun Wu, Ming Wang, Wenzhe Chen, Shuxin Yang, Yongda Liu, Guohua Zeng, Danan Gu
Software Mentions: 11
Published: almost 4 years ago

10.3390/jcm9113643

Diabetic Retinopathy Environment-Wide Association Study (EWAS) in NHANES 2005–2008
Cited by: 10
Author(s): Kevin Blighe, Sarega Gurudas, Ying Lee, Sobha Sivaprasad
Software Mentions: 11
Published: about 4 years ago

10.18632/aging.202957

Integrative analysis identifies key mRNA biomarkers for diagnosis, prognosis, and therapeutic targets of HCV-associated hepatocellular carcinoma
Cited by: 8
Author(s): Yongqiang Zhang, Yuqin Tang, Chengbin Guo, Gen Li
Software Mentions: 11
Published: over 3 years ago

10.3389/fonc.2021.593587

A Nomogram Combining a Four-Gene Biomarker and Clinical Factors for Predicting Survival of Melanoma
Cited by: 4
Author(s): Chuan Zhang, Dan Dang, Yuqian Wang, Xianling Cong
Software Mentions: 11
Published: over 3 years ago

10.3389/fimmu.2021.599207

Molecular and Clinical Characterization of LAG3 in Breast Cancer Through 2994 Samples
Cited by: 15
Author(s): Qiang Liu, Yihang Qi, Jie Zhai, Xiangyi Kong, Xiangyu Wang, Zhongzhao Wang, Yi Fang, Jing Wang
Software Mentions: 11
Published: over 3 years ago

10.1186/s12935-021-02041-4

Ten-gene signature reveals the significance of clinical prognosis and immuno-correlation of osteosarcoma and study on novel skeleton inhibitors regarding MMP9
Cited by: 17
Author(s): Weihang Li, Ziyi Ding, Dong Wang, Chengfei Li, Yikai Pan, Yingjing Zhao, Hongzhe Zhao, Tianxing Lu, Rui Xu, Shilei Zhang, Bin Yuan, Yunlong Zhao, Yanjiang Yin, Yuan Gao, Jing Li, Ming Yan
Software Mentions: 11
Published: over 3 years ago

10.3390/jcm10184245

Machine-Learning Points at Endoscopic, Quality of Life, and Olfactory Parameters as Outcome Criteria for Endoscopic Paranasal Sinus Surgery in Chronic Rhinosinusitis
Cited by: 4
Author(s): Jörn Lötsch, Constantin A. Hintschich, Petros Petridis, Jürgen Pade, Thomas Hummel
Software Mentions: 11
Published: over 3 years ago

10.3389/fonc.2021.614052

MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer Patients
Cited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: over 3 years ago

10.1016/j.cell.2018.08.067

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease
Cited by: 396
Author(s): James Kinchen, Hannah H. Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar, Eshita Sharma, Quin F. Wills, Rory Bowden, Felix Clemens Richter, David Ahern, Kamal D. Puri, Jill Hénault, François G. Gervais, Hashem Koohy, Alison Simmons
Software Mentions: 11
Published: about 6 years ago

10.1002/1878-0261.12117

Recurrence-associated gene signature optimizes recurrence-free survival prediction of colorectal cancer
Cited by: 37
Author(s): Xianglong Tian, Xiaoqiang Zhu, Tingting Yan, Chuangqi Yu, Chaoqin Shen, Ye Hu, Jie Hong, Haoyan Chen, Jing‐Yuan Fang
Software Mentions: 11
Published: about 7 years ago

10.1038/s41598-021-94329-8

Combined detection of peripheral blood VEGF and inflammation biomarkers to evaluate the clinical response and prognostic prediction of non-operative ESCC
Cited by: 4
Author(s): Yuanyuan Ma, Xinyu Su, Xin Li, Xiaohui Zhi, Kan Jiang, Jianhong Xia, Hongliang Li, Yan Chen, Lixin Zhou
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0222603

Clinical correlates of workplace injury occurrence and recurrence in adults
Cited by: 1
Author(s): Zhaoyi Chen, Mattia Prosperi, Jiang Bian, Jae Min, Mo Wang, Chang Li
Software Mentions: 10
Published: over 5 years ago

10.3389/fonc.2021.653863

A Deep-Learning Model With the Attention Mechanism Could Rigorously Predict Survivals in Neuroblastoma
Cited by: 2
Author(s): Chenzhao Feng, Tianyu Xiang, Zixuan Yi, Xinyao Meng, Xufeng Chu, Guiyang Huang, Xiang Zhao, Feng Chen, Bo Xiong, Jiexiong Feng
Software Mentions: 10
Published: over 3 years ago

10.7717/peerj.6061

Development and internal validation of a nine-lncRNA prognostic signature for prediction of overall survival in colorectal cancer patients
Cited by: 11
Author(s): Zhiqiao Zhang, Qingbo Liu, Peng Wang, Jing Li, Tingshan He, Yanling Ouyang, Yiyan Huang, Weidong Wang
Software Mentions: 10
Published: about 6 years ago

10.1371/journal.pcbi.1007803

Methodological challenges in translational drug response modeling in cancer: A systematic analysis with FORESEE
Cited by: 9
Author(s): Lisa-Katrin Turnhoff, Ali Hadizadeh Esfahani, Andreas Schuppert
Software Mentions: 10
Published: over 4 years ago

10.18632/aging.202174

Periodontitis in elderly patients with type 2 diabetes mellitus: impact on gut microbiota and systemic inflammation
Cited by: 18
Author(s): Jinyou Li, Haifeng Lü, Hengchao Wu, Shunmei Huang, Lufang Chen, Qifeng Gui, Wenjing Zhou, Yichen Yang, Yue Wu, Hua Zhang, Qin Zhang, Yunmei Yang
Software Mentions: 10
Published: about 4 years ago

10.1186/s12935-019-0890-2

Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort
Cited by: 19
Author(s): Zhiqiao Zhang, Yanling Ouyang, Yiyan Huang, Peng Wang, Jing Li, Tingshan He, Qingbo Liu
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0254394

Claims-based algorithms for common chronic conditions were efficiently constructed using machine learning methods
Cited by: 0
Author(s): Kozo Hara, Yasuki Kobayashi, Jun Tomio, Yuki Ito, Thomas Svensson, Ryo Ikesu, Ung‐il Chung, Akiko Kishi Svensson
Software Mentions: 10
Published: about 3 years ago

10.3389/fneur.2021.683051

An Externally Validated Dynamic Nomogram for Predicting Unfavorable Prognosis in Patients With Aneurysmal Subarachnoid Hemorrhage
Cited by: 8
Author(s): Ping Hu, Yang Xu, Yangfan Liu, Yuntao Li, Liguo Ye, Si Zhang, Xinyi Zhu, Yangzhi Qi, Huikai Zhang, Qian Sun, Yixuan Wang, Gang Deng, Qianxue Chen
Software Mentions: 10
Published: over 3 years ago

10.1186/s12916-020-01595-w

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
Cited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-018-33077-8

Machine-learning based lipid mediator serum concentration patterns allow identification of multiple sclerosis patients with high accuracy
Cited by: 41
Author(s): Jörn Lötsch, Susanne Schiffmann, Katja Schmitz, R. Brunkhorst, F. Javier Lerch, Nerea Ferreirós, Sabine Wicker, Irmgard Tegeder, Gerd Geißlinger, Alfred Ultsch
Software Mentions: 10
Published: about 6 years ago

10.3389/fgene.2020.569572

Aberrantly Methylated-Differentially Expressed Genes Identify Novel Atherosclerosis Risk Subtypes
Cited by: 6
Author(s): Yuzhou Xue, Yongzheng Guo, Suxin Luo, Wei Zhou, Jun Xiang, Yuansong Zhu, Zhenxian Xiang, Ju Shen
Software Mentions: 10
Published: about 4 years ago

10.18632/aging.102087

Identification of hub genes in prostate cancer using robust rank aggregation and weighted gene co-expression network analysis
Cited by: 71
Author(s): Zhenyu Song, Chongxi Fan, Zhiyuan Zhuo, Zhe Ma, Wenzhi Li, Gang Chen
Software Mentions: 10
Published: over 5 years ago

10.1038/s41598-020-70722-7

Active and social life is associated with lower non-social fearfulness in pet dogs
Cited by: 15
Author(s): Emma Hakanen, Salla Mikkola, Milla Salonen, Jenni Puurunen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 10
Published: over 4 years ago

10.3389/fgene.2021.584164

Four Novel Prognostic Genes Related to Prostate Cancer Identified Using Co-expression Structure Network Analysis
Cited by: 14
Author(s): Tao Feng, Dechao Wei, Qiankun Li, Xiaobing Yang, Yili Han, Yunping Luo, Yongguang Jiang
Software Mentions: 10
Published: over 3 years ago

10.18632/aging.103517

Identifying CpG methylation signature as a promising biomarker for recurrence and immunotherapy in non–small-cell lung carcinoma
Cited by: 13
Author(s): Ruihan Luo, Song Jing, Xiao Xiao, Zhengbo Xie, Zhuochen Zhao, Wanfeng Zhang, Shiqi Miao, Yongyao Tang, Longke Ran
Software Mentions: 10
Published: over 4 years ago

10.1002/1878-0261.12850

High‐throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype‐specific serologically relevant biomarkers
Cited by: 13
Author(s): Thilde Terkelsen, Maria Pernemalm, Pavel Gromov, Anna‐Lise Børresen‐Dale, Anders Krogh, Vilde Drageset Haakensen, Janne Lethiö, Elena Papaleo, Irina Gromova
Software Mentions: 10
Published: almost 4 years ago

10.1097/MD.0000000000026068

MiRNA-based model for predicting the TMB level in colon adenocarcinoma based on a LASSO logistic regression method
Cited by: 1
Author(s): Zhengtian Li, Lingling Jiang, Rong Zhao, Jun Huang, Weibo Yang, Zhenpei Wen, Bo Zhang, Gang Du
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0238160

Diagnostic and prognostic value of hematological and immunological markers in COVID-19 infection: A meta-analysis of 6320 patients
Cited by: 138
Author(s): Rami M. Elshazli, Eman A. Toraih, Abdelaziz Elgaml, Mohammed El‐Mowafy, Mohamed El-Mesery, Mohamed N. Amin, Mohammad Hussein, Mary Killackey, Manal S. Fawzy, Emad Kandil
Software Mentions: 10
Published: over 4 years ago

10.3389/fnagi.2018.00144

Differentiating Patients at the Memory Clinic With Simple Reaction Time Variables: A Predictive Modeling Approach Using Support Vector Machines and Bayesian Optimization
Cited by: 9
Author(s): John Wallert, Eric Westman, Johnny Ulinder, Mathilde Annerstedt, Beata Terzis, Urban Ekman
Software Mentions: 10
Published: over 6 years ago

10.3389/fcell.2021.676485

The Pyroptosis-Related Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Gastric Cancer
Cited by: 116
Author(s): Wei Shao, Zongcheng Yang, Yue Fu, Lixin Zheng, Fen Liu, Li Chai, Jihui Jia
Software Mentions: 10
Published: over 3 years ago

10.5334/aogh.3278

Derivation of a Contextually-Appropriate COVID-19 Mortality Scale for Low-Resource Settings
Cited by: 5
Author(s): Jennifer L Pigoga, Yasein Omer, Lee Wallis
Software Mentions: 10
Published: over 3 years ago

10.1155/2020/6539398

Distinguishing Kawasaki Disease from Febrile Infectious Disease Using Gene Pair Signatures
Cited by: 1
Author(s): Jiayong Zhong, Qingsheng Huang, Yanfei Wang, Huan Gao, Hongling Jia, Jun Fan, Huiying Liang
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pone.0127816

HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to Maraviroc
Cited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: over 9 years ago

10.1007/s00125-018-4641-z

Multiplex proteomics for prediction of major cardiovascular events in type 2 diabetes
Cited by: 38
Author(s): Christoph Nowak, Axel C. Carlsson, Carl Johan Östgren, Fredrik Nyström, Moudud Alam, Tobias Feldreich, Johan Sundström, Juan-Jesús Carrero, Jerzy Leppert, Pär Hedberg, Egil Henriksen, A. C. C. Cordeiro, Vilmantas Giedraitis, Lars Lind, Erik Ingelsson, Tove Fall, Johan Ärnlöv
Software Mentions: 10
Published: over 6 years ago

10.1186/s13073-021-00919-6

Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery
Cited by: 14
Author(s): Rima Chakaroun, Lucas Massier, Anna Heintz‐Buschart, Nedal Said, Jörg Fallmann, Alyce Crane, Tatjana Schütz, Arne Dietrich, Matthias Blüher, Michael Stümvoll, Niculina Musat, Peter Kovacs
Software Mentions: 10
Published: over 3 years ago

10.1038/s42003-020-1087-x

Combining host-derived biomarkers with patient characteristics improves signature performance in predicting tuberculosis treatment outcomes
Cited by: 12
Author(s): Dhanasekaran Sivakumaran, Synne Jenum, Mário Vaz, Sumithra Selvam, Tom H. M. Ottenhoff, Mariëlle C. Haks, Stephanus T. Malherbe, Nancy Devlin, Christian Ritz, Harleen M. S. Grewal
Software Mentions: 10
Published: over 4 years ago

10.3390/diagnostics11071137

A Novel Combination of Blood Biomarkers and Clinical Stroke Scales Facilitates Detection of Large Vessel Occlusion Ischemic Strokes
Cited by: 6
Author(s): Edoardo Gaude, Barbara Nogueira, Marcos Ladreda Mochales, Sheila V. Graham, Sarah Smith, Lisa Shaw, Sara Graziadio, Gonzalo Ladreda Mochales, Philip Sloan, Joshua D. Bernstock, Shashank Shekhar, Toby Gropen, Chris Price
Software Mentions: 10
Published: over 3 years ago

10.3389/fphar.2021.746910

Spermine-Related DNA Hypermethylation and Elevated Expression of Genes for Collagen Formation are Susceptible Factors for Chemotherapy-Induced Hand-Foot Syndrome in Chinese Colorectal Cancer Patients
Cited by: 3
Author(s): Mingming Li, Jiani Chen, Shaoqun Liu, Xiaomeng Sun, Huilin Xu, Qianmin Gao, Xintao Chen, Chaowen Xi, Doudou Huang, Yi Deng, Feng zhang, Shouhong Gao, Shi Qiu, Xin Tao, Jingwen Zhai, Hua Wei, Houshan Yao, Wansheng Chen
Software Mentions: 9
Published: over 3 years ago

10.1186/s13550-021-00809-3

Preselection of robust radiomic features does not improve outcome modelling in non-small cell lung cancer based on clinical routine FDG-PET imaging
Cited by: 7
Author(s): Carol Oliveira, Florian Amstutz, Diem Vuong, Marta Bogowicz, Martin Hüllner, R. E. Forster, Lucas Basler, Christina Schröder, Eric Innocents Eboulet, Miklos Pless, Sandra Thierstein, Solange Peters, Sven Hillinger, Stephanie Tanadini‐Lang, Matthias Gückenberger
Software Mentions: 9
Published: over 3 years ago

10.1186/s12014-017-9163-z

Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects
Cited by: 10
Author(s): Lisa J. Croner, Roslyn Dillon, Athit Kao, Stefanie N. Kairs, Ryan W. Benz, Ib Jarle Christensen, Hans Jørgen Nielsen, John E. Blume, Bruce E. Wilcox
Software Mentions: 9
Published: over 7 years ago

10.1002/jgf2.349

Relationship between medical students’ career priority and specialty choice: A nationwide multicenter survey
Cited by: 6
Author(s): Kenya Ie, Akiko Murata, Masao Tahara, Manabu Komiyama, Shuhei Ichikawa, Yousuke Takemura, Hirotaka Onishi
Software Mentions: 9
Published: over 4 years ago

10.3389/fphys.2018.01945

A Quantitative Comparison of Clinically Employed Parameters in the Assessment of Acute Cerebral Ischemia Using Dynamic Susceptibility Contrast Magnetic Resonance Imaging
Cited by: 1
Author(s): Christian Našel, Uros Klickovic, Heike-Marie Kührer, Kersten Villringer, Jochen B. Fiebach, Arno Villringer, Ewald Moser
Software Mentions: 9
Published: almost 6 years ago

10.1016/j.dib.2020.106651

Impact of malnutrition on survival in adult patients after elective cardiac surgery: Long-term follow up data
Cited by: 0
Author(s): Sergey Efremov, Tatiana Ionova, Tatiana Nikitina, Pavel E. Vedernikov, Timur Dzhumatov, Timofey S. Ovchinnikov, Abduvahhob A. Rashidov, Alexandr E Khomenko, Christian Stoppe, Daren K. Heyland, В. В. Ломиворотов
Software Mentions: 9
Published: almost 4 years ago

10.3389/fpsyt.2019.00041

A Data Science-Based Analysis Points at Distinct Patterns of Lipid Mediator Plasma Concentrations in Patients With Dementia
Cited by: 6
Author(s): Robert Gurke, Semra Etyemez, David Prvulovic, Dominique Thomas, Stefanie C. Fleck, Andreas Reif, Gerd Geißlinger, Jörn Lötsch
Software Mentions: 9
Published: almost 6 years ago

Projects: cran: pROC

Papers Mentioning pROC 1,740