Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12920-015-0114-0

https://doi.org/10.1186/s12920-015-0114-0

Integrated network analysis and logistic regression modeling identify stage-specific genes in Oral Squamous Cell Carcinoma

Cited by: 12
Author(s): Vinay Randhawa, Vishal Acharya
Published: over 9 years ago

Software Mentions 17

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: affyPLM
Methods for fitting probe-level models
Papers that mentioned: 162
bioconductor: annotate
Annotation for microarrays
Papers that mentioned: 36
bioconductor: frma
Frozen RMA and Barcode
Papers that mentioned: 26
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: Harshlight
A "corrective make-up" program for microarray chips
Papers that mentioned: 8
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: COMBAT
A Combined Association Test for Genes using Summary Statistics
Papers that mentioned: 157
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: poweRlaw
Analysis of Heavy Tailed Distributions
Papers that mentioned: 33
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: annotate
Decorator to set a function's __annotations__ like Py3.
Papers that mentioned: 36
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607