cran: ROCR | Projects | Ecosyste.ms: Papers

10.1084/jem.20210915

Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosis
Cited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Software Mentions: 27
Published: over 2 years ago

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: over 3 years ago

10.1186/s13072-016-0095-z

EpiMINE, a computational program for mining epigenomic data
Cited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: over 7 years ago

10.1371/journal.pone.0169748

SoilGrids250m: Global gridded soil information based on machine learning
Cited by: 2,126
Author(s): Tomislav Hengl, Jorge Mendes de Jesus, G.B.M. Heuvelink, M. Ruiperez González, Milorad Kilibarda, Aleksandar Blagotić, Wei Shangguan, Marvin N. Wright, Xiaoyuan Geng, Bernhard Bauer-Marschallinger, Mário Guevara, Rodrigo Vargas, R.A. MacMillan, N.H. Batjes, J.G.B. Leenaars, Eloi Ribeiro, Ichsani Wheeler, S. Mantel
Software Mentions: 19
Published: over 7 years ago

10.3390/ijms21228837

Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in Cancer
Cited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: over 3 years ago

10.3389/fonc.2020.607727

Gene Panel of Persister Cells as a Prognostic Indicator for Tumor Repopulation After Radiation
Cited by: 3
Author(s): Yucui Zhao, Yanwei Song, Ruyi Zhao, Minghui Zhao, Qian Huang
Software Mentions: 18
Published: over 3 years ago

10.7717/peerj.5457

Global mapping of potential natural vegetation: an assessment of machine learning algorithms for estimating land potential
Cited by: 84
Author(s): Tomislav Hengl, Markus Walsh, Jonathan Sanderman, Ichsani Wheeler, Sandy P. Harrison, Iain Colin Prentice
Software Mentions: 17
Published: over 5 years ago

10.1186/s12920-015-0114-0

Integrated network analysis and logistic regression modeling identify stage-specific genes in Oral Squamous Cell Carcinoma
Cited by: 12
Author(s): Vinay Randhawa, Vishal Acharya
Software Mentions: 17
Published: almost 9 years ago

10.1371/journal.pcbi.1003531

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
Cited by: 2,083
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 17
Published: about 10 years ago

10.1186/1472-6947-13-126

Evaluation of prediction models for the staging of prostate cancer
Cited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: over 10 years ago

10.3389/fimmu.2020.606164

Six Immune Associated Genes Construct Prognostic Model Evaluate Low-Grade Glioma
Cited by: 32
Author(s): Yin Qiu Tan, Yun Tao Li, Teng Feng Yan, Yang Xu, Bao Hui Liu, Ji An Yang, Yang Xue, Qianxue Chen, Hong Bo Zhang
Software Mentions: 14
Published: over 3 years ago

10.3389/fgene.2020.522125

Identification of Prognostic Markers in Cholangiocarcinoma Using Altered DNA Methylation and Gene Expression Profiles
Cited by: 11
Author(s): Nitish K. Mishra, Meng Niu, Siddesh Southekal, Prachi Bajpai, Amr Elkholy, Upender Manne, Chittibabu Guda
Software Mentions: 14
Published: over 3 years ago

10.3389/fcell.2020.592490

Transcriptome Sequencing Reveals Potential Roles of ICOS in Primary Sjögren’s Syndrome
Cited by: 19
Author(s): Jing Luo, Xin Liao, Lihe Zhang, Xin Xu, Senhong Ying, Mengjiao Yu, Lixia Zhu, Suxian Lin, Xiaobing Wang
Software Mentions: 14
Published: over 3 years ago

10.3389/fgene.2021.702072

Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic Cancer
Cited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: over 2 years ago

10.1186/s12888-020-02645-6

Depression, anxiety, and burnout among medical students and residents of a medical school in Nepal: a cross-sectional study
Cited by: 66
Author(s): Nishan Babu Pokhrel, Ramesh Khadayat, P Tulachan
Software Mentions: 14
Published: almost 4 years ago

10.3390/cancers12051142

Integrative Analysis of Fecal Metagenomics and Metabolomics in Colorectal Cancer
Cited by: 55
Author(s): Marc Clos-García, Koldo Garcia, Cristina Alonso, Marta Iruarrizaga‐Lejarreta, Mauro D’Amato, Anais Crespo, Águeda Iglesias, Joaquín Cubiella, Luís Bujanda, Juan Manuel Falcón‐Pérez
Software Mentions: 14
Published: about 4 years ago

10.3389/fonc.2021.697948

Development and Validation of a Nomogram and a Comprehensive Prognostic Analysis of an LncRNA-Associated Competitive Endogenous RNA Network Based on Immune-Related Genes for Locally Advanced Rectal Cancer With Neoadjuvant Therapy
Cited by: 2
Author(s): Fang-Ze Wei, Shiwen Mei, Zhijie Wang, Jianan Chen, Huan Shen, Fen Zhao, Juan Li, Tixian Xiao, Qian Liu
Software Mentions: 13
Published: almost 3 years ago

10.1016/j.mbplus.2019.04.001

Pan-Cancer analysis of the expression and regulation of matrisome genes across 32 tumor types
Cited by: 37
Author(s): Valerio Izzi, Juho Lakkala, Raman Devarajan, Anni Kääriäinen, Jarkko Koivunen, Ritva Heljasvaara, Taina Pihlajaniemi
Software Mentions: 13
Published: over 5 years ago

10.3389/fgene.2021.652189

Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance
Cited by: 11
Author(s): Chirag Gupta, Venkategowda Ramegowda, Supratim Basu, Andy Pereira
Software Mentions: 13
Published: almost 3 years ago

10.1007/s00216-020-03093-7

Repeated double cross-validation applied to the PCA-LDA classification of SERS spectra: a case study with serum samples from hepatocellular carcinoma patients
Cited by: 23
Author(s): Elisa Gurian, Alessia Di Silvestre, Elisa Mitri, Devis Pascut, Claudio Tiribelli, Mauro Giuffrè, Lory Saveria Crocè, Valter Sergo, Alois Bonifacio
Software Mentions: 12
Published: over 3 years ago

10.3389/fonc.2019.01361

Development and Validation of an RNA-Seq-Based Prognostic Signature in Neuroblastoma
Cited by: 28
Author(s): Jianguo Zhou, Bo Liang, Sanli Jin, Hui-Ling Liao, Guocheng Du, Long Cheng, Hu Ma, Udo S. Gaipl
Software Mentions: 12
Published: over 4 years ago

10.1155/2021/2291899

Crosstalk between Heart Failure and Cognitive Impairment via hsa-miR-933/RELB/CCL21 Pathway
Cited by: 8
Author(s): Wenxiao Feng, Jie Yang, Wen‐Chao Song, Yi-Tao Xue
Software Mentions: 11
Published: over 2 years ago

10.1080/0886022X.2021.1960563

Derivation and validation of a model to predict acute kidney injury following cardiac surgery in patients with normal renal function
Cited by: 8
Author(s): Penghua Hu, Zhiming Mo, Yuanhan Chen, Yanhua Wu, Li Song, Li Zhang, Zhilian Li, Lei Fu, Huaban Liang, Yiming Tao, Shuangxin Liu, Zhiming Ye, Xinling Liang
Software Mentions: 11
Published: over 3 years ago

10.1155/2017/7907163

A Multicriteria Approach to Find Predictive and Sparse Models with Stable Feature Selection for High-Dimensional Data
Cited by: 11
Author(s): Andrea Bommert, Jörg Rahnenführer, Michel Lang
Software Mentions: 11
Published: over 7 years ago

10.1186/s40168-020-00805-0

Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed
Cited by: 80
Author(s): Hyun Kim, Kiseok Keith Lee, Jongbum Jeon, William Harris, Yong-Hwan Lee
Software Mentions: 11
Published: over 4 years ago

10.3389/fgene.2021.620705

Identification of Tumor Microenvironment-Related Prognostic Genes in Sarcoma
Cited by: 6
Author(s): Dongjun Dai, Lanyu Xie, Yongjie Shui, Jinfan Li, Qichun Wei
Software Mentions: 11
Published: over 3 years ago

10.1186/s12879-019-4585-z

Development of a high number, high coverage dog rabies vaccination programme in Sri Lanka
Cited by: 8
Author(s): Carlos Sánchez-Soriano, Andrew D Gibson, Luke Gamble, Jordana L. Burdon Bailey, Samantha Green, Mark Green, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Stella Mazeri
Software Mentions: 11
Published: over 4 years ago

10.34133/2020/8954085

Machine Learning-Based Presymptomatic Detection of Rice Sheath Blight Using Spectral Profiles
Cited by: 23
Author(s): Anna O. Conrad, Wei Li, Da-Young Lee, Guo‐Liang Wang, Luis E. Rodriguez‐Saona, Pierluigi Bonello
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pone.0127816

HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to Maraviroc
Cited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: almost 9 years ago

10.1371/journal.pcbi.1006457

Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes
Cited by: 118
Author(s): Weilong Zhao, Xinwei Sher
Software Mentions: 10
Published: over 5 years ago

10.3390/cells10050977

Identification of 15 lncRNAs Signature for Predicting Survival Benefit of Advanced Melanoma Patients Treated with Anti-PD-1 Monotherapy
Cited by: 22
Author(s): Jianguo Zhou, Bo Liang, Jianguo Liu, Sanli Jin, Sisi He, Benjamin Frey, Ning Gu, Rainer Fietkau, Markus Hecht, Hu Ma, Udo S. Gaipl
Software Mentions: 10
Published: about 3 years ago

10.1038/s41598-020-64095-0

Snapshots of human anatomy, locomotion, and behavior from Late Pleistocene footprints at Engare Sero, Tanzania
Cited by: 17
Author(s): Kevin G. Hatala, William E. H. Harcourt‐Smith, Adam D. Gordon, Brian W. Zimmer, Brian G. Richmond, Briana Pobiner, David J. Green, Adam Metallo, Vince Rossi, Cynthia M. Liutkus-Pierce
Software Mentions: 10
Published: about 4 years ago

10.1002/cam4.3632

Analyzing and predicting the LNM rate and prognosis of patients with intraductal papillary mucinous neoplasm of the pancreas
Cited by: 1
Author(s): Chao‐Tao Tang, Bi‐Xia Liu, Youxiang Chen, Chunyan Zeng
Software Mentions: 10
Published: about 3 years ago

10.1371/journal.pone.0095753

A Comparison of Supervised Machine Learning Algorithms and Feature Vectors for MS Lesion Segmentation Using Multimodal Structural MRI
Cited by: 41
Author(s): Elizabeth Sweeney, Joshua T. Vogelstein, Jennifer L. Cuzzocreo, Peter A. Calabresi, Daniel S. Reich, Ciprian M. Crainiceanu, Russell T. Shinohara
Software Mentions: 10
Published: about 10 years ago

10.1038/s41598-017-05505-8

Machine Learning Algorithms for Risk Prediction of Severe Hand-Foot-Mouth Disease in Children
Cited by: 15
Author(s): Bin Zhang, Xiang Wan, Fu Ouyang, Yu Dong, Dehui Luo, Jing Liu, Long Liang, Wen Bo Chen, Xiao Luo, Xiao Mo, Lu Zhang, Wen Hui Huang, Shu Fang Pei, Bao Liang Guo, Chun Liang, Long Zhou, Shui Xing Zhang
Software Mentions: 10
Published: almost 7 years ago

10.12688/f1000research.7118.2

DREAMTools: a Python package for scoring collaborative challenges
Cited by: 9
Author(s): Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Alberto de la Fuente, Mehmet Gönen, Steven M. Hill, Bruce Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Sáez-Rodríguez
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pcbi.1008947

Chromosomal neighbourhoods allow identification of organ specific changes in gene expression
Cited by: 1
Author(s): Rishi Das Roy, Outi Hallikas, Mona M. Christensen, Élodie Renvoisé, Jukka Jernvall
Software Mentions: 10
Published: over 2 years ago

10.1155/2020/9762067

14-CpG-Based Signature Improves the Prognosis Prediction of Hepatocellular Carcinoma Patients
Cited by: 8
Author(s): Hongye Jiang, Gang Ning, Yensheng Wang, Weibiao Lv
Software Mentions: 9
Published: over 4 years ago

10.1186/s12885-021-08745-0

A case-control study of a combination of single nucleotide polymorphisms and clinical parameters to predict clinically relevant toxicity associated with fluoropyrimidine and platinum-based chemotherapy in gastric cancer
Cited by: 5
Author(s): Miguel Córdova-Delgado, María Loreto Bravo, E Cumsille, Catherine M. Hill, Matías Muñoz-Medel, Mauricio P. Pinto, Ignacio N. Retamal, María A Lavanderos, Juan Francisco Miquel, María Rodríguez-Fernández, Yuwei Liao, Chi Kong Li, Alejandro Corvalán, Ricardo Armisén, Marcelo Garrido, Luis A. Quiñones, Gareth I. Owen
Software Mentions: 9
Published: over 2 years ago

10.1186/s12014-017-9163-z

Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects
Cited by: 10
Author(s): Lisa J. Croner, Roslyn Dillon, Athit Kao, Stefanie N. Kairs, Ryan W. Benz, Ib Jarle Christensen, Hans Jørgen Nielsen, John E. Blume, Bruce E. Wilcox
Software Mentions: 9
Published: almost 7 years ago

10.1186/gb-2014-15-3-r47

Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines
Cited by: 571
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 9
Published: about 10 years ago

10.1371/journal.pone.0084227

Automatic Context-Specific Subnetwork Discovery from Large Interaction Networks
Cited by: 10
Author(s): Ashis Saha, Aik Choon Tan, Jaewoo Kang
Software Mentions: 9
Published: over 10 years ago

10.7717/peerj.3771

Habitat suitability—density relationship in an endangered woodland species: the case of the Blue Chaffinch (<i>Fringilla polatzeki</i>)
Cited by: 8
Author(s): Luis M. Carrascal, Ángel C. Moreno, A. Delgado, Víctor Suárez, Domingo Trujillo
Software Mentions: 9
Published: over 6 years ago

10.3389/fonc.2021.616976

A Nomogram for Preoperative Estimation of Microvascular Invasion Risk in Hepatocellular Carcinoma: Single-Center Analyses With Internal Validation
Cited by: 5
Author(s): Jiarui Yang, Shuguang Zhu, Juanjuan Yong, Xia Long, Xiangjun Qian, Jiawei Yang, Xueqiao Hu, Yuxuan Li, Chusi Wang, Wenguang Peng, Lei Zhang, Meihai Deng, Weidong Pan
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0214459

A method to improve fishing selectivity through age targeted fishing using life stage distribution modelling
Cited by: 5
Author(s): Neil M. Burns, David M. Bailey, Peter J. Wright
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-019-55563-3

RETRACTED ARTICLE: The diagnostic nomogram of platelet-based score models for hepatic alveolar echinococcosis and atypical liver cancer
Cited by: 4
Author(s): Qiancheng Du, Yanyan Wang, Shihao Guan, Chenliang Hu, Mengxuan Li, Ling Zhou, Mengzhao Zhang, Yichong Chen, Xuepeng Mei, Jian Sun, Ying Zhou
Software Mentions: 9
Published: over 4 years ago

10.1002/jia2.25467

Super learner analysis of real‐time electronically monitored adherence to antiretroviral therapy under constrained optimization and comparison to non‐differentiated care approaches for persons living with HIV in rural Uganda
Cited by: 10
Author(s): Alejandra Benitez, Nicholas Musinguzi, David R. Bangsberg, Mwebesa Bwana, Conrad Muzoora, Peter W. Hunt, Jeffrey N. Martin, Jessica Haberer, Maya Petersen
Software Mentions: 9
Published: about 4 years ago

10.3389/fgene.2020.00785

Systematic Evaluation of the Diagnostic and Prognostic Significance of Competitive Endogenous RNA Networks in Prostate Cancer
Cited by: 3
Author(s): Zihu Guo, Han Liang, Yingxue Fu, Ziyin Wu, Yaohua Ma, Yueping Liu, Haiqing Wang, Li Jiang, Shengnan Liang, Zhenzhong Wang, Furong Li, Wei Xiao, Jingbo Wang, Yonghua Wang
Software Mentions: 9
Published: almost 4 years ago

10.3389/fmicb.2021.713234

Metabolomic Predictors of Non-alcoholic Steatohepatitis and Advanced Fibrosis in Children
Cited by: 12
Author(s): Kattayoun Kordy, Fan Li, David J Lee, Jason M. Kinchen, Michael Jew, Maria Eduarda La Rocque, Sara Zabih, Mónica Saavedra, Cora L. Woodward, Nicole J Cunningham, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 9
Published: almost 3 years ago

10.15252/msb.20177862

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Cited by: 53
Author(s): Daniela Michlmayr, Theodore R. Pak, Adeeb Rahman, El ad David Amir, Eun Young Kim, Seunghee Kim‐Schulze, Maria Suprun, Michael G. Stewart, Guajira P. Thomas, Ángel Balmaseda, Li Wang, Jun Zhu, Mayte Suárez‐Fariñas, Steven M. Wolinsky, Andrew Kasarskis, Eva Harris
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pntd.0006159

Barriers of attendance to dog rabies static point vaccination clinics in Blantyre, Malawi
Cited by: 30
Author(s): Stella Mazeri, Andrew D Gibson, Natascha Meunier, Barend M. deC. Bronsvoort, Ian Handel, Richard J. Mellanby, Luke Gamble
Software Mentions: 9
Published: over 6 years ago

10.1186/s40249-020-00677-4

Factors associated with mobile phone ownership and potential use for rabies vaccination campaigns in southern Malawi
Cited by: 15
Author(s): Orla Marron, Gareth J. Thomas, Jordana L. Burdon Bailey, Dagmar Mayer, Paul Orion Grossman, Frederic Lohr, Andrew D Gibson, Luke Gamble, Patrick Chikungwa, Julius L.C. Chulu, Ian Handel, Barend Mark de Clare Bronsvoort, Richard J. Mellanby, Stella Mazeri
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-018-38054-9

Species distribution models throughout the invasion history of Palmer amaranth predict regions at risk of future invasion and reveal challenges with modeling rapidly shifting geographic ranges
Cited by: 50
Author(s): Ryan D. Briscoe Runquist, Thomas A. Lake, Peter Tiffin, David A. Moeller
Software Mentions: 9
Published: about 5 years ago

10.18632/oncotarget.16961

RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
Cited by: 24
Author(s): Ryne C. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, Laura Palacio, David S. Gunther, R Myers, Sara J. Cooper
Software Mentions: 8
Published: about 7 years ago

10.3390/diagnostics11061079

Identification of Diagnostic Biomarkers and Their Correlation with Immune Infiltration in Age-Related Macular Degeneration
Cited by: 3
Author(s): Yuyang Zeng, Xiujuan Yin, Changzheng Chen, Yiqiao Xing
Software Mentions: 8
Published: almost 3 years ago

10.3390/ijms22042102

Putative Circulating MicroRNAs Are Able to Identify Patients with Mitral Valve Prolapse and Severe Regurgitation
Cited by: 6
Author(s): Paola Songia, Mattia Chiesa, Valentina Alfieri, Ilaria Massaiu, Donato Moschetta, Veronika A. Myasoedova, Vincenza Valerio, Laura Fusini, Paola Gripari, Marco Zanobini, Paolo Poggio
Software Mentions: 8
Published: about 3 years ago

10.1155/2021/9048375

Nomograms for Predicting Prognosis of Primary Mediastinal Seminoma: A Population-Based Study
Cited by: 2
Author(s): Weining Huang, Jingwen Luo, Xianghong Zhou, Ying Zhao, Tao Zhang, Xuelei Ma
Software Mentions: 8
Published: about 3 years ago

10.1038/s41598-021-85680-x

A 14-gene gemcitabine resistance gene signature is significantly associated with the prognosis of pancreatic cancer patients
Cited by: 9
Author(s): Xing Wei, Xiaochong Zhou, Yun Zhao, Yao He, Zhen Weng, Chunfang Xu
Software Mentions: 8
Published: about 3 years ago

10.3389/fimmu.2021.606146

Expression of MICA in Zero Hour Biopsies Predicts Graft Survival After Liver Transplantation
Cited by: 3
Author(s): Thomas Resch, Hubert Hackl, Hannah Esser, Julia Günther, H. G. Schwelberger, Paul Viktor Ritschl, Susanne Ebner, Manuel Maglione, Vanessa Mellitzer, Matthias Biebl, Robert Öllinger, Heinz Zoller, Stefan Schneeberger, Katja Kotsch
Software Mentions: 8
Published: almost 3 years ago

10.3390/cancers13061212

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma
Cited by: 3
Author(s): Ashwini Kumar, Sadiksha Adhikari, Matti Kankainen, Caroline A. Heckman
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pone.0252602

Variation isn’t that hard: Morphosyntactic choice does not predict production difficulty
Cited by: 2
Author(s): Matt Hunt Gardner, Eva Uffing, Nicholas Van Vaeck, Benedikt Szmrecsanyi
Software Mentions: 8
Published: almost 3 years ago

10.3390/jcm9092955

Optimized Identification of Advanced Chronic Kidney Disease and Absence of Kidney Disease by Combining Different Electronic Health Data Resources and by Applying Machine Learning Strategies
Cited by: 8
Author(s): Christoph Weber, Lena Röschke, Luise Modersohn, Christina Lohr, Tobias Kolditz, Udo Hahn, Danny Ammon, Boris Betz, Michael Kiehntopf
Software Mentions: 8
Published: over 3 years ago

10.3390/healthcare8020111

A Comparative Analysis of Breast Cancer Detection and Diagnosis Using Data Visualization and Machine Learning Applications
Cited by: 64
Author(s): Muhammet Fatih Ak
Software Mentions: 8
Published: about 4 years ago

10.1136/bmjopen-2020-040132

Prediction of perinatal death using machine learning models: a birth registry-based cohort study in northern Tanzania
Cited by: 27
Author(s): Innocent B. Mboya, Michael Johnson Mahande, Mohanad Mohammed, Joseph Obure, Henry Mwambi
Software Mentions: 8
Published: over 3 years ago

10.3389/fgene.2019.00624

Survival Analysis of Multi-Omics Data Identifies Potential Prognostic Markers of Pancreatic Ductal Adenocarcinoma
Cited by: 53
Author(s): Nitish K. Mishra, Siddesh Southekal, Chittibabu Guda
Software Mentions: 8
Published: almost 5 years ago

10.3389/fonc.2020.535985

Biomarker Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal Cancers Based on lncRNA-Associated ceRNA Network Analysis
Cited by: 24
Author(s): Xin Qi, Yuxin Lin, Xingyun Liu, Jiajia Chen, Bairong Shen
Software Mentions: 8
Published: over 3 years ago

10.1007/s00125-017-4329-9

The kynurenine:tryptophan ratio as a predictor of incident type 2 diabetes mellitus in individuals with coronary artery disease
Cited by: 53
Author(s): Eirik Wilberg Rebnord, Elin Strand, Øivind Midttun, G.F.T. Svingen, Monika H. E. Christensen, Per Magne Ueland, Gunnar Mellgren, Pål Rasmus Njølstad, Grethe S. Tell, Ottar Nygård, Eva Ringdal Pedersen
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0219302

Artificial intelligence algorithm for predicting mortality of patients with acute heart failure
Cited by: 74
Author(s): Joon Kwon, Kyung Hee Kim, Ki‐Hyun Jeon, Sang Eun Lee, Hae Young Lee, Hyun Jai Cho, Jin Oh Choi, Eun Seok Jeon, Min Seok Kim, Jae Joong Kim, Kyung Kuk Hwang, Shung Chull Chae, Sang Hong Baek, Seok Min Kang, Dong Ju Choi, Byung Su Yoo, Kye Hun Kim, Hyun-Young Park, Myeong Chan Cho, Byung Hee Oh
Software Mentions: 7
Published: almost 5 years ago

10.1186/1471-2105-16-S5-S10

Using epigenomics data to predict gene expression in lung cancer
Cited by: 40
Author(s): Jeffery Li, Travers Ching, Sijia Huang, Lana X. Garmire
Software Mentions: 7
Published: about 9 years ago

10.1186/s13148-019-0651-z

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression
Cited by: 18
Author(s): Shivani Kamdar, Ruth Isserlin, Theodorus van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil Fleshner, Bharati Bapat
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0097678

Evaluation of Toxicogenomics Approaches for Assessing the Risk of Nongenotoxic Carcinogenicity in Rat Liver
Cited by: 16
Author(s): Johannes Eichner, Clemens Wrzodek, Michael Roemer, Heidrun Ellinger‐Ziegelbauer, Andreas Zell
Software Mentions: 7
Published: about 10 years ago

10.1161/CIRCULATIONAHA.117.028084

Direct Comparison of Cardiac Myosin-Binding Protein C With Cardiac Troponins for the Early Diagnosis of Acute Myocardial Infarction
Cited by: 57
Author(s): Thomas E Kaier, Raphael Twerenbold, Christian Puelacher, Jack Marjot, Nazia Imambaccus, Jasper Boeddinghaus, Thomas Nestelberger, Patrick Badertscher, Zaid Sabti, María Rubini Giménez, Karin Wildi, Petra Hillinger, Karin Grimm, Sarah Loeffel, Samyut Shrestha, Dayana Flores, Janosch Cupa, Nikola Kozhuharov, Òscar Miró, Francisco Javier Martín‐Sánchez, Beata Morawiec, Katharina Rentsch, Jens Lohrmann, Wanda Kloos, Stefan Oßwald, Tobias Reichlin, Ekkehard Weber, Michael Marber, Christian Müeller
Software Mentions: 7
Published: over 6 years ago

10.18632/aging.102200

Identification and validation of four hub genes involved in the plaque deterioration of atherosclerosis
Cited by: 12
Author(s): Peipei Chen, Yuexin Chen, Wei Wu, Lianfeng Chen, Xufei Yang, Shuyang Zhang
Software Mentions: 7
Published: over 4 years ago

10.7554/eLife.28440

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity
Cited by: 37
Author(s): Pierre Khoueiry, Charles Girardot, Lucia Ciglar, Pei-Chen Peng, E. Hilary Gustafson, Saurabh Sinha, Eileen E. M. Furlong
Software Mentions: 7
Published: almost 7 years ago

10.3390/ijms21124236

Differential Urinary Proteome Analysis for Predicting Prognosis in Type 2 Diabetes Patients with and without Renal Dysfunction
Cited by: 25
Author(s): Hee‐Sung Ahn, Jong Ho Kim, Hee Jong Jeong, Jeesuk Yu, Jeonghun Yeom, Sang Heon Song, Sang Soo Kim, In Joo Kim, Kyunggon Kim
Software Mentions: 7
Published: almost 4 years ago

10.1128/mSystems.00264-19

A Genome-Based Species Taxonomy of the <i>Lactobacillus</i> Genus Complex
Cited by: 46
Author(s): Stijn Wittouck, Sander Wuyts, Conor J. Meehan, Vera van Noort, Sarah Lebeer
Software Mentions: 7
Published: over 4 years ago

10.1002/1878-0261.12348

Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer
Cited by: 38
Author(s): Keefe Murphy, Brendan Murphy, Susie Boyce, Louise Flynn, Sarah Gilgunn, Colm J. O’Rourke, Cathy Rooney, Henning Stöckmann, Anna Walsh, Stephen P. Finn, Richard O’Kennedy, John O’Leary, Stephen R. Pennington, Antoinette S. Perry, Pauline M. Rudd, Radka Saldova, Orla Sheils, Denis C. Shields, R. William G. Watson
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-72801-1

Severity assessment in mice subjected to carbon tetrachloride
Cited by: 13
Author(s): Lisa Ernst, Leonie Zieglowski, M Schulz, Michaela Moss, M. Meyer, Ralf Weiskirchen, Rupert Palme, Melanie Hamann, Steven R. Talbot, René Tolba
Software Mentions: 7
Published: over 3 years ago

10.1186/s10194-018-0863-1

The role of personality, disability and physical activity in the development of medication-overuse headache: a prospective observational study
Cited by: 15
Author(s): Louise Schlosser Mose, Susanne S. Pedersen, Birgit Debrabant, Rigmor Jensen, Bibi Gram
Software Mentions: 7
Published: almost 6 years ago

10.3390/molecules24162977

VOC Profiles of Saliva in Assessment of Halitosis and Submandibular Abscesses Using HS-SPME-GC/MS Technique
Cited by: 32
Author(s): Fernanda Monedeiro, Maciej Milanowski, Ileana-Andreea Raţiu, Hubert Zmysłowski, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 7
Published: almost 5 years ago

10.3390/cancers13174476

Combining APR-246 and HDAC-Inhibitors: A Novel Targeted Treatment Option for Neuroblastoma
Cited by: 8
Author(s): Michael Müller, Lisa Rösch, Sara Najafi, Charlotte Gatzweiler, Johannes Ridinger, Xenia F Gerloff, David Jones, Jochen Baßler, Sina Kreth, Sabine Stainczyk, Karen Frese, Benjamin Meder, Frank Westermann, Till Milde, Heike Peterziel, Olaf Witt, Ina Oehme
Software Mentions: 7
Published: over 2 years ago

10.1371/journal.pone.0245437

Identifying intentional injuries among children and adolescents based on Machine Learning
Cited by: 1
Author(s): Xiling Yin, Dan Ma, Kejing Zhu, Deyun Li
Software Mentions: 7
Published: over 3 years ago

10.1038/sdata.2018.21

Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich’s ataxia patients
Cited by: 22
Author(s): Marta Seco-Cervera, Daymé González-Rodríguez, José Santiago Ibáñez-Cabellos, Lorena Peiró-Chova, Federico V. Pallardó, José Luis García-Giménez
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0216793

Patterns of gene expression characterize T1 and T3 clear cell renal cell carcinoma subtypes
Cited by: 4
Author(s): A. Borys, Michał Seweryn, Tomasz Gołąbek, Łukasz Bełch, Agnieszka Klimkowska, Justyna Totoń‐Żurańska, Julita Machlowska, Piotr Chłosta, Krzysztof Okoń, Paweł Wołkow
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12935-020-01216-9

Integrated nomogram based on five stage-related genes and TNM stage to predict 1-year recurrence in hepatocellular carcinoma
Cited by: 14
Author(s): Haohan Liu, Yongcong Yan, Ruibing Chen, Mengdi Zhu, Jianhong Lin, Chuanchao He, Bingchao Shi, Ke Wen, Kai Mao, Zhiyu Xiao
Software Mentions: 7
Published: about 4 years ago

10.3389/fcell.2019.00283

A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome
Cited by: 2
Author(s): Selma L van Esveld, Şirin Cansız-Arda, Fenna Hensen, Robin van der Lee, Martijn Huynen, Johannes N. Spelbrink
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.202278

Identification of long non-coding RNA signatures for squamous cell carcinomas and adenocarcinomas
Cited by: 0
Author(s): Suyan Tian, Mingbo Tang, Jialin Li, Chi Wang, Wei Liu
Software Mentions: 7
Published: over 3 years ago

10.3389/fcimb.2020.00131

Dysbiosis in Peripheral Blood Mononuclear Cell Virome Associated With Systemic Lupus Erythematosus
Cited by: 4
Author(s): Gangqiang Guo, Lele Ye, Xinyu Shi, Kejing Yan, Jingjing Huang, Kangming Lin, Dong Xing, Sisi Ye, Yuqing Wu, Baoqing Li, Chaosheng Chen, Xiangyang Xue, Huidi Zhang
Software Mentions: 7
Published: about 4 years ago

10.3389/fnagi.2021.605970

Immune Profiling of Parkinson’s Disease Revealed Its Association With a Subset of Infiltrating Cells and Signature Genes
Cited by: 12
Author(s): Xi Zhang, Zhihua Shao, Sutong Xu, Qiulu Liu, Chenming Liu, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-020-01992-7

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
Cited by: 5
Author(s): Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao, Kaifu Chen
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pcbi.1004575

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
Cited by: 292
Author(s): Minzhe Guo, Hui Wang, S. Steven Potter, Jeffrey A. Whitsett, Yan Xu
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0181943

CRISPRpred: A flexible and efficient tool for sgRNAs on-target activity prediction in CRISPR/Cas9 systems
Cited by: 63
Author(s): Md. Khaledur Rahman, Mahfuzur Rahman
Software Mentions: 7
Published: almost 7 years ago

10.7554/eLife.12845

Two FGFRL-Wnt circuits organize the planarian anteroposterior axis
Cited by: 90
Author(s): M. Lucila Scimone, Lauren E. Cote, Travis Rogers, Peter W. Reddien
Software Mentions: 7
Published: about 8 years ago

10.3732/apps.1600158

Source Identification of Western Oregon Douglas-Fir Wood Cores Using Mass Spectrometry and Random Forest Classification
Cited by: 31
Author(s): Kristen N. Finch, Edgard O. Espinoza, F. Andrew Jones, Richard Cronn
Software Mentions: 6
Published: about 7 years ago

10.3389/fphys.2018.01778

Identification of Crucial Genes and Pathways in Human Arrhythmogenic Right Ventricular Cardiomyopathy by Coexpression Analysis
Cited by: 11
Author(s): Peipei Chen, Bo Long, Yuanfu Xu, Wei Wu, Shuyang Zhang
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-12-404

pcrEfficiency: a Web tool for PCR amplification efficiency prediction
Cited by: 58
Author(s): Izaskun Mallona, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 6
Published: over 12 years ago

10.1155/2020/2357840

A Real-World Study of Prognosis of N0M0 Hepatocellular Carcinoma with Hepatic Resection Based on SEER Database
Cited by: 3
Author(s): Guoqi Zhu, Wensheng Wang, Qin Liu, Dongfeng Chen, Liangzhi Wen
Software Mentions: 6
Published: about 4 years ago

10.1210/en.2019-00165

Search for Early Pancreatic Cancer Blood Biomarkers in Five European Prospective Population Biobanks Using Metabolomics
Cited by: 18
Author(s): Jesse Fest, Lisanne S Vijfhuizen, Jelle J. Goeman, Olga Veth, Anni Joensuu, Markus Perola, Satu Männistö, Eivind Ness-Jensen, Kristian Hveem, Toomas Haller, Neeme Tõnisson, Kairit Mikkel, Andres Metspalu, Cornelia M. van Duijn, M. Arfan Ikram, Bruno H. Ch. Stricker, Rikje Ruiter, Casper H.J. van Eijck, Gert‐Jan B. van Ommen, Peter A.C. ’t Hoen
Software Mentions: 6
Published: almost 5 years ago

10.1155/2018/4246703

Candidate Biomarkers and Molecular Mechanism Investigation for Glioblastoma Multiforme Utilizing WGCNA
Cited by: 64
Author(s): Qi Yang, Rui Wang, Bo Wei, Chuangang Peng, Le Wang, Guozhang Hu, Daliang Kong, Chao Du
Software Mentions: 6
Published: over 5 years ago

Projects: cran: ROCR

Papers Mentioning ROCR 596