Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2020.522125

https://doi.org/10.3389/fgene.2020.522125

Identification of Prognostic Markers in Cholangiocarcinoma Using Altered DNA Methylation and Gene Expression Profiles

Cited by: 11
Author(s): Nitish K. Mishra, Meng Niu, Siddesh Southekal, Prachi Bajpai, Amr Elkholy, Upender Manne, Chittibabu Guda
Published: about 4 years ago

Software Mentions 14

bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methods
Papers that mentioned: 132
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
Papers that mentioned: 19
bioconductor: gtrellis
Genome Level Trellis Layout
Papers that mentioned: 5
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: missMethyl
Analysing Illumina HumanMethylation BeadChip Data
Papers that mentioned: 54
bioconductor: RTCGAToolbox
A new tool for exporting TCGA Firehose data
Papers that mentioned: 22
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
cran: scatterplot3d
3D Scatter Plot
Papers that mentioned: 69
pypi: camera
A Python module to use a PiCamera easily
Papers that mentioned: 5