Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00264-19

https://doi.org/10.1128/mSystems.00264-19

A Genome-Based Species Taxonomy of the <i>Lactobacillus</i> Genus Complex

Cited by: 46
Author(s): Stijn Wittouck, Sander Wuyts, Conor J. Meehan, Vera van Noort, Sarah Lebeer
Published: about 5 years ago

Software Mentions 7

bioconductor: ggtree

an R package for visualization of tree and annotation data
Papers that mentioned: 474

cran: MCL

Markov Cluster Algorithm
Papers that mentioned: 563

cran: ROCR

Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596

cran: tidyverse

Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023

pypi: barrnap

python package for barrnap
Papers that mentioned: 56

pypi: blast

a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819

pypi: pyani

pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120