Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fonc.2020.607727

https://doi.org/10.3389/fonc.2020.607727

Cited by: 3
Author(s): Yucui Zhao, Yanwei Song, Ruyi Zhao, Minghui Zhao, Qian Huang
Published: over 3 years ago

Software Mentions 18

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: foreign
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
Papers that mentioned: 94
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: rms
Regression Modeling Strategies
Papers that mentioned: 1,236
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survivalROC
Time-Dependent ROC Curve Estimation from Censored Survival Data
Papers that mentioned: 479
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690