Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-01992-7

https://doi.org/10.1186/s13059-020-01992-7

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription

Cited by: 5
Author(s): Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao, Kaifu Chen
Published: over 4 years ago

Software Mentions 7

cran: perm
Exact or Asymptotic Permutation Tests
Papers that mentioned: 25
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
cran: shiftR
Fast Enrichment Analysis via Circular Permutations
Papers that mentioned: 2
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
pypi: perm

Papers that mentioned: 25
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017