Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: perm

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/perm

Exact or Asymptotic Permutation Tests
5 versions
Latest release: about 1 year ago
4 dependent packages
2,443 downloads last month

Papers Mentioning perm 25

Differences in the Estimation of Wildfire-Associated Air Pollution by Satellite Mapping of Smoke Plumes and Ground-Level Monitoring
Cited by: 9
Author(s): Raj P. Fadadu, John R. Balmes, Stephanie M. Holm
Software Mentions: 10
Published: about 4 years ago

10.1186/s13059-020-01992-7

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
Cited by: 5
Author(s): Guangyu Wang, Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao, Yanqiang Li, Xin Wang, Lili Zhang, John P. Cooke, Qi Cao, Kaifu Chen
Software Mentions: 7
Published: over 4 years ago

10.3389/fnhum.2018.00472

The Role of Frontostriatal Systems in Instructed Reinforcement Learning: Evidence From Genetic and Experimentally-Induced Variation
Cited by: 2
Author(s): Nathan Tardiff, Kathryn N. Graves, Sharon L. Thompson-Schill
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12964-018-0301-7

Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation
Cited by: 1
Author(s): Petr Tomek, Shanti K. Gore, Chloe L. Potts, Cristin G. Print, Michael A. Black, Ariane Hallermayr, Michael Kilian, Evelyn Sattlegger, Ching Li
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.6237

Contrasting altitudinal variation of alpine plant communities along the Swedish mountains
Cited by: 6
Author(s): Johannes Måsviken, Fredrik Dalerum, Sara A. O. Cousins
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0198664

Migrations and habitat use of the smooth hammerhead shark (Sphyrna zygaena) in the Atlantic Ocean
Cited by: 17
Author(s): Catarina C. Santos, Rui Coelho
Software Mentions: 6
Published: over 6 years ago

10.1002/ece3.6471

Rapid generation of ecologically relevant behavioral novelty in experimental cichlid hybrids
Cited by: 12
Author(s): Anna F. Feller, Oliver M. Selz, Matthew D. McGee, Joana I. Meier, Salome Mwaiko, Ole Seehausen
Software Mentions: 6
Published: over 4 years ago

10.1111/eva.12697

Combining mitochondrial and nuclear genome analyses to dissect the effects of colonization, environment, and geography on population structure in<i>Pinus tabuliformis</i>
Cited by: 27
Author(s): Hanhan Xia, Baosheng Wang, Zhao Wang, Peng Jin, Jian‐Feng Mao, Xiaoru Wang
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0128155

Can Newts Cope with the Heat? Disparate Thermoregulatory Strategies of Two Sympatric Species in Water
Cited by: 26
Author(s): Monika Balogová, Lumı́r Gvoždı́k
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0047508

Early Social Networks Predict Survival in Wild Bottlenose Dolphins
Cited by: 177
Author(s): Margaret A. Stanton, Janet Mann
Software Mentions: 6
Published: about 12 years ago

10.1371/journal.pone.0067345

Impact of Geography and Climate on the Genetic Differentiation of the Subtropical Pine Pinus yunnanensis
Cited by: 37
Author(s): Baosheng Wang, Jian‐Feng Mao, Zhao Wang, Xiaoru Wang
Software Mentions: 5
Published: over 11 years ago

10.1186/s13075-021-02530-x

Biomechanical stress in the context of competitive sports training triggers enthesitis
Cited by: 7
Author(s): Dávid Simon, Arnd Kleyer, Sara Bayat, Johannes Knitza, Larissa Valor‐Méndez, M. Schweiger, Georg Schett, Koray Taşçılar, Axel J. Hueber
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0185011

Effects of tumour necrosis factor α upon the metabolism of the endocannabinoid anandamide in prostate cancer cells
Cited by: 7
Author(s): J.‐A. Karlsson, Sandra Gouveia-Figueira, Mireille Alhouayek, Christopher J. Fowler
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.5021

The conservation value of cacao agroforestry for bird functional diversity in tropical agricultural landscapes
Cited by: 10
Author(s): Joedison Rocha, Rudi Ricardo Laps, Caio Graco Machado, Sofía Campiolo
Software Mentions: 4
Published: over 5 years ago

10.3389/fncir.2017.00019

NCAM Regulates Inhibition and Excitability in Layer 2/3 Pyramidal Cells of Anterior Cingulate Cortex
Cited by: 4
Author(s): Xuying Zhang, Chelsea S. Sullivan, Megan B. Kratz, Michael R. Kasten, Patricia F. Maness, Paul B. Manis
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0197199

Cooking behaviors are related to household particulate matter exposure in children with asthma in the urban East Bay Area of Northern California
Cited by: 17
Author(s): Stephanie M. Holm, John R. Balmes, Dan Gillette, Kris Hartin, Edmund Seto, David Lindeman, Dianna Polanco, Edward Fong
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0194583

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model
Cited by: 37
Author(s): Hosna Jabbari, Ian William Wark, Carlo Montemagno
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.25100

Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection
Cited by: 17
Author(s): Magdalena Steinrueck, Cǎlin C. Guet
Software Mentions: 3
Published: over 7 years ago

10.3390/genes12091381

No Expression Divergence despite Transcriptional Interference between Nested Protein-Coding Genes in Mammals
Cited by: 1
Author(s): Raquel Assis
Software Mentions: 3
Published: about 3 years ago

10.1007/s10709-015-9875-9

Dominance from the perspective of gene–gene and gene–chemical interactions
Cited by: 2
Author(s): Arkadiusz Gładki, Piotr Zielenkiewicz, Szymon Kaczanowski
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pgen.1002598

Broad-Specificity mRNA–rRNA Complementarity in Efficient Protein Translation
Cited by: 13
Author(s): Pamela A. Barendt, Najaf A. Shah, Gregory A. Barendt, Casim A. Sarkar
Software Mentions: 3
Published: over 12 years ago

10.1038/srep39631

RNA synthesis is associated with multiple TBP-chromatin binding events
Cited by: 8
Author(s): Hussain Zaidi, David T. Auble, Stefan Bekiranov
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-24270-w

Multi-lectin Affinity Chromatography and Quantitative Proteomic Analysis Reveal Differential Glycoform Levels between Prostate Cancer and Benign Prostatic Hyperplasia Sera
Cited by: 38
Author(s): Sarah M. Totten, Ravali Adusumilli, Majlinda Kullolli, Cheylene Tanimoto, James D. Brooks, Parag Mallick, Sharon J. Pitteri
Software Mentions: 2
Published: over 6 years ago

10.1111/mec.12046

Supportive breeding boosts natural population abundance with minimal negative impacts on fitness of a wild population of <scp>C</scp>hinook salmon
Cited by: 65
Author(s): Maureen A. Hess, Craig Rabe, Jason L. Vogel, Jeff Stephenson, Doug D. Nelson, Shawn R. Narum
Software Mentions: 2
Published: about 12 years ago

10.1038/s42003-021-01697-y

Unraveling the deep learning gearbox in optical coherence tomography image segmentation towards explainable artificial intelligence
Cited by: 17
Author(s): Peter Maloca, Philipp L. Müller, Aaron Lee, Adnan Tufail, Konstantinos Balaskas, Stephanie Niklaus, Pascal Kaiser, Susanne K. Suter, Javier Zarranz‐Ventura, Hendrik P. N. Scholl, Tobias K Schnitzer, Thomas P. Singer, Pascal W. Hasler, Nora Denk
Software Mentions: 2
Published: almost 4 years ago