Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fonc.2021.690129

https://doi.org/10.3389/fonc.2021.690129

A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric Cancer

Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Published: over 3 years ago

Software Mentions 16

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
bioconductor: GenVisR
Genomic Visualizations in R
Papers that mentioned: 54
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
bioconductor: survcomp
Performance Assessment and Comparison for Survival Analysis
Papers that mentioned: 117
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: NbClust
Determining the Best Number of Clusters in a Data Set
Papers that mentioned: 181
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: rmda
Risk Model Decision Analysis
Papers that mentioned: 131
cran: sparcl
Perform Sparse Hierarchical Clustering and Sparse K-Means Clustering
Papers that mentioned: 12
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690