Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fonc.2021.690129

https://doi.org/10.3389/fonc.2021.690129

Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Published: almost 3 years ago

Software Mentions 16

bioconductor: affy

Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989

bioconductor: ConsensusClusterPlus

ConsensusClusterPlus
Papers that mentioned: 313

bioconductor: GenVisR

Genomic Visualizations in R
Papers that mentioned: 54

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: maftools

Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288

bioconductor: survcomp

Performance Assessment and Comparison for Survival Analysis
Papers that mentioned: 117

bioconductor: sva

Surrogate Variable Analysis
Papers that mentioned: 511

cran: NbClust

Determining the Best Number of Clusters in a Data Set
Papers that mentioned: 181

cran: pROC

Display and Analyze ROC Curves
Papers that mentioned: 1,740

cran: rmda

Risk Model Decision Analysis
Papers that mentioned: 131

cran: sparcl

Perform Sparse Hierarchical Clustering and Sparse K-Means Clustering
Papers that mentioned: 12

cran: survival

Survival Analysis
Papers that mentioned: 1,690

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: survival

Add static script_dir() method to Path
Papers that mentioned: 1,690