bioconductor: maftools | Projects

10.3389/fimmu.2021.659444

Development and Validation of a CD8+ T Cell Infiltration-Related Signature for Melanoma Patients
Cited by: 13
Author(s): Yuan Yuan, Zheng Zhu, Ying Lan, Saili Duan, Zijue Zhu, Xi Zhang, Guoyin Li, Hui Qü, Yao Feng, Hui Cai, Zewen Song
Software Mentions: 24
Published: over 3 years ago

10.1016/j.xcrm.2020.100128

The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer
Cited by: 32
Author(s): Derek J. Essegian, Rimpi Khurana, Vasileios Stathias, Stephan C. Schürer
Software Mentions: 21
Published: about 4 years ago

10.3389/fcell.2020.596679

Development and Validation of a Combined Ferroptosis and Immune Prognostic Classifier for Hepatocellular Carcinoma
Cited by: 77
Author(s): Yang Liu, Xi Zhang, Junjun Zhang, Juan Tan, Jie Li, Zewen Song
Software Mentions: 16
Published: almost 4 years ago

10.3389/fonc.2021.690129

A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric Cancer
Cited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Software Mentions: 16
Published: over 3 years ago

10.1186/s12967-021-02773-x

Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types
Cited by: 5
Author(s): Guoshu Bi, Jiaqi Liang, Yuansheng Zheng, Runmei Li, Mengnan Zhao, Yiwei Huang, Cheng Zhan, Songtao Xu, Hong Fan
Software Mentions: 15
Published: over 3 years ago

10.3389/fcell.2021.671736

Identification of a Novel Immune Landscape Signature for Predicting Prognosis and Response of Endometrial Carcinoma to Immunotherapy and Chemotherapy
Cited by: 6
Author(s): Jinhui Liu, Yichun Wang, Jie Mei, Song Nie, Yan Zhang
Software Mentions: 15
Published: over 3 years ago

10.1186/s12967-021-02894-3

Identification of immune subtypes of cervical squamous cell carcinoma predicting prognosis and immunotherapy responses
Cited by: 8
Author(s): Yimin Li, Shun Lü, Shubin Wang, Xinhao Peng, Jinyi Lang
Software Mentions: 14
Published: over 3 years ago

10.3389/fgene.2021.702072

Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic Cancer
Cited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: over 3 years ago

10.1155/2020/8833972

An Epithelial-Mesenchymal Transition (EMT) Preoperative Nomogram for Prediction of Lymph Node Metastasis in Bladder Cancer (BLCA)
Cited by: 5
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 14
Published: about 4 years ago

10.18632/aging.203353

Development and validation of an intra-tumor heterogeneity-related signature to predict prognosis of bladder cancer: a study based on single-cell RNA-seq
Cited by: 7
Author(s): Ranran Zhou, Jingjing Liang, Qi Chen, Haijun Tian, Cheng Yang, Cundong Liu
Software Mentions: 14
Published: over 3 years ago

10.3389/fimmu.2021.557994

Investigation of Genetic Determinants of Glioma Immune Phenotype by Integrative Immunogenomic Scale Analysis
Cited by: 10
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Congxin Dai
Software Mentions: 14
Published: over 3 years ago

10.1038/s41598-021-97362-9

N6-methylandenosine-related lncRNAs play an important role in the prognosis and immune microenvironment of pancreatic ductal adenocarcinoma
Cited by: 5
Author(s): Yuhai Hu, Yiping Chen
Software Mentions: 14
Published: over 3 years ago

10.1186/s12967-021-02889-0

Pan-cancer characterization of metabolism-related biomarkers identifies potential therapeutic targets
Cited by: 6
Author(s): Guoshu Bi, Yunyi Bian, Jiaqi Liang, Jiacheng Yin, Runmei Li, Mengnan Zhao, Yiwei Huang, Tao Lu, Cheng Zhan, Hong Fan, Qun Wang
Software Mentions: 13
Published: over 3 years ago

10.3389/fonc.2020.01317

The Potential of Five Immune-Related Prognostic Genes to Predict Survival and Response to Immune Checkpoint Inhibitors for Soft Tissue Sarcomas Based on Multi-Omic Study
Cited by: 17
Author(s): Hao Gu, Lu-Lu Lin, Zhang Chao, Min Yang, Hongshan Zhong, Renxiong Wei
Software Mentions: 13
Published: over 4 years ago

10.18632/aging.202831

Seven interferon gamma response genes serve as a prognostic risk signature that correlates with immune infiltration in lung adenocarcinoma
Cited by: 11
Author(s): Boyang Yao, Lixin Wang, Heyong Wang, Jinxia Bao, Qiwen Li, Fengzhi Yu, Wenjing Zhu, Li Zhang, Wang Li, Gu Zhan, Ke Fei, Peng Zhang, Fan Zhang, Xiaoying Huang
Software Mentions: 13
Published: over 3 years ago

10.1186/s12935-021-01900-4

Role of tumor mutation burden-related signatures in the prognosis and immune microenvironment of pancreatic ductal adenocarcinoma
Cited by: 16
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Yu Lei, Si Shi
Software Mentions: 12
Published: over 3 years ago

10.7717/peerj.10255

Comprehensive genomic analysis of microenvironment phenotypes in ovarian cancer
Cited by: 4
Author(s): Jingshu Wang, Tingting Zhang, Lina Yang, Gong Yang
Software Mentions: 12
Published: about 4 years ago

10.3390/ijms20225621

APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved Survival
Cited by: 45
Author(s): Mariko Asaoka, Takashi Ishikawa, Kazuaki Takabe, Santosh K. Patnaik
Software Mentions: 11
Published: about 5 years ago

10.18632/oncotarget.22928

Comparing the genomes of cutaneous melanoma tumors to commercially available cell lines
Cited by: 10
Author(s): Stephen A. Luebker, Weiwei Zhang, Scott A. Koepsell
Software Mentions: 11
Published: about 7 years ago

10.3389/fonc.2020.570654

Prognostic Role of Tumor Mutation Burden Combined With Immune Infiltrates in Skin Cutaneous Melanoma Based on Multi-Omics Analysis
Cited by: 16
Author(s): Junya Yan, Xiaowen Wu, Jiayi Yu, Yanyan Zhu, Shundong Cang
Software Mentions: 11
Published: about 4 years ago

10.3390/ijms221910302

The Impact of m1A Methylation Modification Patterns on Tumor Immune Microenvironment and Prognosis in Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Li Gao, Ru Chen, Masahiro Sugimoto, Masanobu Mizuta, Yo Kishimoto, Koichi Omori
Software Mentions: 11
Published: about 3 years ago

10.1111/jcmm.16552

Identification of autophagy‐related genes signature predicts chemotherapeutic and immunotherapeutic efficiency in bladder cancer (BLCA)
Cited by: 8
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 11
Published: over 3 years ago

10.3389/pore.2021.1609852

Identification of a Gene Prognostic Model of Gastric Cancer Based on Analysis of Tumor Mutation Burden
Cited by: 9
Author(s): Weijun Ma, Weidong Li, Xu Liu, Lu Liu, Xinbing Yu, Liping Yang, Mingxu Da
Software Mentions: 11
Published: over 3 years ago

10.1038/s41408-019-0199-3

Deciphering the chronology of copy number alterations in Multiple Myeloma
Cited by: 35
Author(s): Anıl Aktaş Samur, Stéphane Minvielle, Masood A. Shammas, Mariateresa Fulciniti, Florence Magrangeas, Paul G. Richardson, Philippe Moreau, Michel Attal, Kenneth C. Anderson, Giovanni Parmigiani, Hervé Avet‐Loiseau, Nikhil C. Munshi, Mehmet K. Samur
Software Mentions: 11
Published: over 5 years ago

10.18632/aging.203257

Characterization of ferroptosis signature to evaluate the predict prognosis and immunotherapy in glioblastoma
Cited by: 14
Author(s): Xiaopeng Zhu, Yuxiang Zhou, Yangqian Ou, Zebo Cheng, Deqing Han, Zhou Chu, Sian Pan
Software Mentions: 10
Published: over 3 years ago

10.3389/fonc.2021.643465

Identification of the Roles of a Stemness Index Based on mRNA Expression in the Prognosis and Metabolic Reprograming of Pancreatic Ductal Adenocarcinoma
Cited by: 6
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 10
Published: over 3 years ago

10.3389/fgene.2021.692953

Identification of the Real Hub Gene and Construction of a Novel Prognostic Signature for Pancreatic Adenocarcinoma Based on the Weighted Gene Co-expression Network Analysis and Least Absolute Shrinkage and Selection Operator Algorithms
Cited by: 15
Author(s): Qihang Yuan, Jie Ren, Zhizhou Wang, Ji Li, Dawei Deng, Dong Shang
Software Mentions: 10
Published: over 3 years ago

10.3389/fcell.2021.676485

The Pyroptosis-Related Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Gastric Cancer
Cited by: 116
Author(s): Wei Shao, Zongcheng Yang, Yue Fu, Lixin Zheng, Fen Liu, Li Chai, Jihui Jia
Software Mentions: 10
Published: over 3 years ago

10.7717/peerj.9624

Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancer
Cited by: 12
Author(s): Zhi Zeng, Daxing Xie, Jianping Gong
Software Mentions: 10
Published: over 4 years ago

10.1002/1878-0261.12747

Identification and validation of a combined hypoxia and immune index for triple‐negative breast cancer
Cited by: 57
Author(s): Shaoquan Zheng, Yutian Zou, Jie Liang, Weikai Xiao, Anli Yang, Tiebao Meng, Shilin Lu, Zhong-Bing Luo, Xiaoming Xie
Software Mentions: 10
Published: over 4 years ago

10.1038/s41422-020-00451-z

Sequential fate-switches in stem-like cells drive the tumorigenic trajectory from human neural stem cells to malignant glioma
Cited by: 38
Author(s): Xiaofei Wang, Ran Zhou, Yanzhen Xiong, Lingling Zhou, Xiang Yan, Manli Wang, Li Fan, Chuanxing Xie, Yiming Zhang, Zongyao Huang, Chaoqiong Ding, Ke Shi, Weida Li, Liu Yu, Cao Zeyi, Zhenning Zhang, Shengtao Zhou, Chong Chen, Yan Zhang, Lu Chen, Yuan Wang
Software Mentions: 10
Published: almost 4 years ago

10.1007/s00262-020-02817-z

Immune signature-based risk stratification and prediction of immune checkpoint inhibitor’s efficacy for lung adenocarcinoma
Cited by: 85
Author(s): Ming Yi, An‐Ping Li, Linghui Zhou, Qian Chu, Suxia Luo, Kongming Wu
Software Mentions: 10
Published: almost 4 years ago

10.3389/fonc.2020.602498

Metabolism-Associated Molecular Classification of Colorectal Cancer
Cited by: 13
Author(s): Meng Zhang, Haizhou Wang, Ruyi Peng, Fei Xu, Fan Wang, Qiu Zhao
Software Mentions: 9
Published: about 4 years ago

10.3389/fimmu.2021.719628

Comprehensive Characterization of RNA Processing Factors in Gastric Cancer Identifies a Prognostic Signature for Predicting Clinical Outcomes and Therapeutic Responses
Cited by: 17
Author(s): Shenghan Lou, Fanzheng Meng, Xin Yin, Yao Zhang, Bangling Han, Yingwei Xue
Software Mentions: 9
Published: over 3 years ago

10.1186/s12943-020-01170-0

m6A regulator-mediated methylation modification patterns and tumor microenvironment infiltration characterization in gastric cancer
Cited by: 600
Author(s): Bo Zhang, Qiong Wu, Ben Li, Defeng Wang, Lei Wang, You Zhou
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0221235

Computational tools to detect signatures of mutational processes in DNA from tumours: A review and empirical comparison of performance
Cited by: 42
Author(s): Hanane Omichessan, Gianluca Severi, Vittorio Perduca
Software Mentions: 9
Published: over 5 years ago

10.3389/fgene.2021.623424

Correlations Between Tumor Mutation Burden and Immunocyte Infiltration and Their Prognostic Value in Colon Cancer
Cited by: 17
Author(s): Zhangjian Zhou, Xin Xie, Xuan Wang, Xin Zhang, Wenxin Li, Tuanhe Sun, Yifan Cai, Jianhua Wu, Chengxue Dang, Hao Zhang
Software Mentions: 9
Published: almost 4 years ago

10.1186/s12890-021-01588-2

A novel ferroptosis-related genes model for prognosis prediction of lung adenocarcinoma
Cited by: 9
Author(s): Fēi Li, Dongcen Ge, Shulan Sun
Software Mentions: 9
Published: over 3 years ago

10.3389/fonc.2020.573141

Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma
Cited by: 57
Author(s): Kai Kang, Fucun Xie, Jianshan Mao, Yi Bai, Xiang Wang
Software Mentions: 9
Published: over 4 years ago

10.1016/j.celrep.2019.11.077

Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine Fibroids
Cited by: 42
Author(s): Jitu W. George, Huihui Fan, Benjamin K. Johnson, Tyler J. Carpenter, Kelly K. Foy, Anindita Chatterjee, Amanda L. Patterson, Julie Koeman, Marie Adams, Zachary Madaj, David Chesla, Erica E. Marsh, Timothy J. Triche, Hui Shen, Jose Teixeira
Software Mentions: 9
Published: about 5 years ago

10.3389/fcell.2021.704242

Two Similar Signatures for Predicting the Prognosis and Immunotherapy Efficacy of Stomach Adenocarcinoma Patients
Cited by: 4
Author(s): Taohua Yue, Shuai Zuo, Jing Zhu, Shuqin Guo, Zhihao Huang, Jichang Li, Xin Wang, Yucun Liu, Shanwen Chen, Pengyuan Wang
Software Mentions: 8
Published: over 3 years ago

10.3389/fgene.2021.650554

Exploration of the Role of m6 A RNA Methylation Regulators in Malignant Progression and Clinical Prognosis of Ovarian Cancer
Cited by: 4
Author(s): Qinglv Wei, Dan Yang, Xiaoyi Liu, Hongyan Zhao, Yang Yu, Jing Xu, Tao Liu, Ping Yi
Software Mentions: 8
Published: over 3 years ago

10.3389/fmolb.2021.675198

A High Epigenetic Risk Score Shapes the Non-Inflamed Tumor Microenvironment in Breast Cancer
Cited by: 1
Author(s): Dong Zhang, Yingnan Wang, Qifeng Yang
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-021-98966-x

Identification of immune-related subtypes of colorectal cancer to improve antitumor immunotherapy
Cited by: 4
Author(s): Xiangkuo Zheng, Yong Gao, Chunhua Yu, Guiquan Fan, Pengwu Li, Ming Zhang, Jian Yu, Mingqing Xu
Software Mentions: 8
Published: about 3 years ago

10.3389/fcell.2021.712230

A Novel Ferroptosis-Related Prognostic Signature Reveals Macrophage Infiltration and EMT Status in Bladder Cancer
Cited by: 19
Author(s): Yi‐Lin Yan, Jinming Cai, Zhengnan Huang, Xiangqian Cao, Pengyu Tang, Zeyi Wang, Fang Zhang, Shujie Xia, Bing Shen
Software Mentions: 8
Published: over 3 years ago

10.7150/ijms.51064

Tumor Mutation Burden, Immune Cell Infiltration, and Construction of Immune-Related Genes Prognostic Model in Head and Neck Cancer
Cited by: 32
Author(s): Aimin Jiang, Mengdi Ren, Na Liu, Huan Gao, Jingjing Wang, Xiaoqiang Zheng, Xiao Fu, Xuan Liu, Zhiping Ruan, Tao Tian, Yu Yao
Software Mentions: 8
Published: almost 4 years ago

10.18632/aging.203266

Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinoma
Cited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: over 3 years ago

10.1186/s12967-021-03065-0

Comprehensive analysis of EMT-related genes and lncRNAs in the prognosis, immunity, and drug treatment of colorectal cancer
Cited by: 28
Author(s): Yang Yang, Mingyang Feng, Liangliang Bai, Wei‐Ting Liao, Kaiyu Zhou, Mengxi Zhang, Qiuji Wu, Feng Wen, Wenhua Lei, Pengfei Zhang, Nan Zhang, Jiaxing Huang, Li Qiu
Software Mentions: 8
Published: over 3 years ago

10.1186/s12964-021-00728-9

Multi-omics analysis of tumor angiogenesis characteristics and potential epigenetic regulation mechanisms in renal clear cell carcinoma
Cited by: 28
Author(s): Wenzhong Zheng, Shiqiang Zhang, Huan Guo, Xiaobao Chen, Zhangcheng Huang, Shaoqin Jiang, Mengqiang Li
Software Mentions: 8
Published: over 3 years ago

10.3389/fcell.2021.710207

Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular Carcinoma
Cited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: over 3 years ago

10.18632/aging.202670

A novel panel based on immune infiltration and tumor mutational burden for prognostic prediction in hepatocellular carcinoma
Cited by: 5
Author(s): Chengzhi Xie, Hewei Wu, Tao Pan, Xingrong Zheng, Xiaoàn Yang, Genglin Zhang, Yunwen Lian, Jiaxin Lin, Liang Peng
Software Mentions: 8
Published: almost 4 years ago

10.3390/jpm11020154

Comprehensive Profiling of Genomic and Transcriptomic Differences between Risk Groups of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
Cited by: 19
Author(s): Talip Zengin, Tuğba Önal-Süzek
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12967-021-03076-x

A novel immune subtype classification of ER-positive, PR-negative and HER2-negative breast cancer based on the genomic and transcriptomic landscape
Cited by: 4
Author(s): Peiling Xie, Rui An, Shibo Yu, Jing He, Huimin Zhang
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-021-07895-6

Identification of ferroptosis genes in immune infiltration and prognosis in thyroid papillary carcinoma using network analysis
Cited by: 26
Author(s): Rui-Qing Lin, Conor E. Fogarty, Bao‐Qing Ma, Hejie Li, Guoying Ni, Xiaosong Liu, Jing Yuan, Tianfang Wang
Software Mentions: 8
Published: over 3 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: over 3 years ago

10.1186/s12935-021-01774-6

Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinoma
Cited by: 14
Author(s): Ling Zhao, Xueshu Fu, Xiling Han, Yu Yao, Yaping Ye, Jun Gao
Software Mentions: 7
Published: almost 4 years ago

10.3389/fonc.2021.729340

Tumor Mutation Burden-Associated LINC00638/miR-4732-3p/ULBP1 Axis Promotes Immune Escape via PD-L1 in Hepatocellular Carcinoma
Cited by: 15
Author(s): Qi Feng, Xiaojing Du, Zhiying Zhao, Ding Zhang, Mengli Huang, Yuezong Bai, Biwei Yang, Wenxing Qin, Jinglin Xia
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2020.01409

Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade Glioma
Cited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2021.632459

Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
Cited by: 3
Author(s): Ruiliang Wang, Zongtai Zheng, Shun Mao, Wentao Zhang, Ji Liu, Cheng Li, Shenghua Liu, Xudong Yao
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2021.639642

Immune-Related Genes Are Prognostic Markers for Prostate Cancer Recurrence
Cited by: 10
Author(s): Min Fu, Qiang Wang, Hanbo Wang, Ying Dai, Jin Wang, Weiting Kang, Zilian Cui, Xunbo Jin
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2020.00634

Construction of a Comprehensive Multiomics Map of Hepatocellular Carcinoma and Screening of Possible Driver Genes
Cited by: 6
Author(s): Ziyu Liu, Yan Lin, Xing Gao, Rongyun Mai, Xuemin Piao, Jiazhou Ye, Rong Liang
Software Mentions: 7
Published: over 4 years ago

10.3389/fcell.2021.668810

Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma
Cited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: about 3 years ago

10.3389/fcell.2021.665364

Hypoxia Constructing the Prognostic Model of Colorectal Adenocarcinoma and Related to the Immune Microenvironment
Cited by: 11
Author(s): Yuanyuan Zhang, Feng Yang, Xiaohong Peng, Xiaoyü Li, Na Luo, Wenjun Zhu, Min Fu, Qianxia Li, Guangyuan Hu
Software Mentions: 7
Published: over 3 years ago

10.3389/fmolb.2020.00053

Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory Therapy
Cited by: 1
Author(s): Yong Xu, Daixi Li, Zhenhao Liu, David L. Gibbs, Lu Xie, Guangrong Qin
Software Mentions: 7
Published: over 4 years ago

10.3389/fmolb.2020.562441

Novel Molecular Subtypes Associated With 5mC Methylation and Their Role in Hepatocellular Carcinoma Immunotherapy
Cited by: 12
Author(s): Zhuomao Mo, Zhirui Cao, Shaoju Luo, Yan Chen, Shijun Zhang
Software Mentions: 7
Published: about 4 years ago

10.3389/fimmu.2021.672158

Analysis of Tumor Microenvironment Characteristics in Bladder Cancer: Implications for Immune Checkpoint Inhibitor Therapy
Cited by: 21
Author(s): Xingyu Chen, Haotian Chen, Dong He, Ying Cheng, Yuxing Zhu, Mengqing Xiao, Hua Lan, Zhanwang Wang, Ke Cao
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pgen.1009201

Genomic and transcriptomic landscape of conjunctival melanoma
Cited by: 14
Author(s): Katarina Cisarova, Marc Folcher, Ikram El Zaoui, Rosanna Pescini Gobert, Virginie G. Peter, Béryl Royer‐Bertrand, Léonidas Zografos, Ann Schalenbourg, Michaël Nicolas, Donata Rimoldi, Serge Leyvraz, Nicolò Riggi, Alexandre Moulin, Carlo Rivolta
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmolb.2021.624951

Metabolism-Relevant Molecular Classification Identifies Tumor Immune Microenvironment Characterization and Immunotherapeutic Effect in Cervical Cancer
Cited by: 4
Author(s): Luyi Li, Hui Gao, Danhan Wang, Hao Jiang, Hongzhu Wang, Jiajian Yu, Xin Jiang, Changjiang Huang
Software Mentions: 7
Published: over 3 years ago

10.1007/s12020-020-02434-x

Using The Cancer Genome Atlas data to refine the 8th edition of the American Joint Committee on Cancer staging for papillary thyroid carcinoma
Cited by: 3
Author(s): Anello Marcello Poma, Elisabetta Macerola, Liborio Torregrossa, Rossella Elisei, Ferruccio Santini, Fulvio Basolo
Software Mentions: 7
Published: over 4 years ago

10.3389/fimmu.2020.01900

Biomarkers of the Response to Immune Checkpoint Inhibitors in Metastatic Urothelial Carcinoma
Cited by: 5
Author(s): Siteng Chen, Ning Zhang, Tao Wang, Encheng Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 7
Published: over 4 years ago

10.1111/jcmm.15877

RAD51AP1 promotes progression of ovarian cancer via TGF‐β/Smad signalling pathway
Cited by: 17
Author(s): Hongyu Zhao, Yan Gao, Qi Chen, Jie Li, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 7
Published: about 4 years ago

10.3389/fcell.2021.618313

Long Non-coding RNA Expression Patterns in Stomach Adenocarcinoma Serve as an Indicator of Tumor Mutation Burden and Are Associated With Tumor-Infiltrating Lymphocytes and Microsatellite Instability
Cited by: 6
Author(s): Dongdong Yang, Jianan Yu, Bing Han, Yue Sun, Steven Mo, Jing Hu
Software Mentions: 7
Published: almost 4 years ago

10.3390/cancers13071730

Identification and Validation of an Immune-Associated RNA-Binding Proteins Signature to Predict Clinical Outcomes and Therapeutic Responses in Glioma Patients
Cited by: 11
Author(s): Ruotong Tian, Yimin Li, Qian Liu, Minfeng Shu
Software Mentions: 7
Published: over 3 years ago

10.1186/s12894-021-00795-7

Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: almost 4 years ago

10.7150/thno.52717

m6A regulator-based methylation modification patterns characterized by distinct tumor microenvironment immune profiles in colon cancer
Cited by: 135
Author(s): Wei Chong, Liang Shang, Jin Liu, Zhen Fang, Fengying Du, Hao Wu, Liu Yang, Zhe Wang, Chen Yang, Shengtao Jia, Liming Chen, Leping Li, Hao Chen
Software Mentions: 7
Published: almost 4 years ago

10.1111/jcmm.16395

STAT1 is a key gene in a gene regulatory network related to immune phenotypes in bladder cancer: An integrative analysis of multi‐omics data
Cited by: 1
Author(s): Hong Weng, Shuai Yuan, Qiao Huang, Xian‐Tao Zeng, Xinghuan Wang
Software Mentions: 7
Published: almost 4 years ago

10.1186/s13045-018-0679-0

Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathways
Cited by: 31
Author(s): Benoît Tessoulin, Agnès Moreau-Aubry, Géraldine Descamps, Patricia Gomez‐Bougie, Sophie Maïga, Alban Gaignard, David Chiron, Emmanuelle Ménoret, Steven Le Gouill, Philippe Moreau, Martine Amiot, Catherine Pellat‐Deceunynck
Software Mentions: 6
Published: about 6 years ago

10.7150/ijms.51918

Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinoma
Cited by: 3
Author(s): Rong Ouyang, Zhongzhuan Li, Peng Peng, Jinxiu Zhang, Jun Li, Mengbin Qin, Jiean Huang
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12935-021-02049-w

Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinoma
Cited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12935-021-02027-2

Characterization of a ferroptosis and iron-metabolism related lncRNA signature in lung adenocarcinoma
Cited by: 48
Author(s): Jie Yao, Xiao Chen, Xiao Liu, Rui Li, Xi-Jia Zhou, Yi-Qing Qu
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.642608

Significance of Tumor Mutation Burden Combined With Immune Infiltrates in the Progression and Prognosis of Advanced Gastric Cancer
Cited by: 18
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Han Zhang, Chuan Qin, Ziwei Wang
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: over 3 years ago

10.1186/s13046-019-1372-z

Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer
Cited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: over 5 years ago

10.1186/s12885-020-6702-1

Identification of immune cells and mRNA associated with prognosis of gastric cancer
Cited by: 35
Author(s): Mingming Wang, Zedong Li, Pei Yu, Jianyu Fang, Tao Fang, Jiajia Wu, Jun Zhou
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.739975

Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma
Cited by: 7
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.678747

Identification of CXCL10-Relevant Tumor Microenvironment Characterization and Clinical Outcome in Ovarian Cancer
Cited by: 5
Author(s): Jing Jin, Yang Li, Tobias Achu Muluh, Liangke Zhi, Qijie Zhao
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.685065

Comprehensive Landscape of Ovarian Cancer Immune Microenvironment Based on Integrated Multi-Omics Analysis
Cited by: 4
Author(s): Jiacheng Shen, Tingwei Liu, Qiaoli Bei, Shaohua Xu
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.632430

Genomic Alteration Characterization in Colorectal Cancer Identifies a Prognostic and Metastasis Biomarker: FAM83A|IDO1
Cited by: 29
Author(s): Zaoqu Liu, Yuyuan Zhang, Qin Dang, Kunpeng Wu, Dechao Jiao, Zhen Li, Zhenqiang Sun, Xinwei Han
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0205406

Examining the contribution of smoking and HPV towards the etiology of oral cavity squamous cell carcinoma using high-throughput sequencing: A prospective observational study
Cited by: 10
Author(s): Andrew P Zammit, Rohit Anthony Sinha, Caroline Cooper, Christopher Perry, Ian H. Frazer, Zewen Kelvin Tuong
Software Mentions: 6
Published: about 6 years ago

10.3389/fcell.2021.717601

Tumor Immune Microenvironment Landscape in Glioma Identifies a Prognostic and Immunotherapeutic Signature
Cited by: 5
Author(s): Chunyu Zhang, Lirui Guo, Zhongzhou Su, Na Luo, Yinqiu Tan, Pengfei Xu, Liguo Ye, Shiao Tong, Haitao Liu, Xiaobin Li, Qianxue Chen, Daofeng Tian
Software Mentions: 6
Published: about 3 years ago

10.18632/aging.202182

KRAS mutations are negatively correlated with immunity in colon cancer
Cited by: 8
Author(s): Xiaorui Fu, Xinyi Wang, Jinzhong Duanmu, Taiyuan Li, Qunguang Jiang
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-98414-w

Integrated genomics point to immune vulnerabilities in pleural mesothelioma
Cited by: 7
Author(s): Anca Năstase, Amit Kumar Mandal, Shir Kiong Lu, Hima Anbunathan, Deborah Morris-Rosendahl, Yu Zhi Zhang, Xiaoming Sun, Spyridon Gennatas, Robert C. Rintoul, Matthew Edwards, Alex Bowman, Tatyana Chernova, T. Benepal, Eric Lim, Alison Taylor, Andrew G. Nicholson, Sanjay Popat, Anne E. Willis, Marion MacFarlane, Mark Lathrop, Anne M. Bowcock, Miriam F. Moffatt, William Cookson
Software Mentions: 6
Published: about 3 years ago

10.1155/2020/1686480

miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-018-33498-5

Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer
Cited by: 28
Author(s): Raquel L. Costa, Mariana Boroni, Marcelo A. Soares
Software Mentions: 6
Published: about 6 years ago

10.1002/1878-0261.12709

HPV‐related methylation‐based reclassification and risk stratification of cervical cancer
Cited by: 25
Author(s): Shuanying Yang, Ying Wu, Shuqian Wang, Peng Xu, Yao Deng, Meng Wang, Kang Liu, Tian Tian, Yuyao Zhu, Na Li, Linghui Zhou, Zhijun Dai, Huafeng Kang
Software Mentions: 6
Published: over 4 years ago

10.3389/fcell.2021.625212

Clinical Significance of a Novel Tumor Progression-Associated Immune Signature in Colorectal Adenocarcinoma
Cited by: 3
Author(s): Rui Mao, Fan Yang, Wei Zheng, Chang Xu, Qian Liu, Yanjun Liu, Tongtong Zhang
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2020.578933

Comprehensive Analysis of Prognostic Markers for Acute Myeloid Leukemia Based on Four Metabolic Genes
Cited by: 7
Author(s): Yuanyuan Zhang, Shuai Ma, Moran Wang, Wei Shi, Yu Hu
Software Mentions: 6
Published: about 4 years ago

10.3389/fphar.2020.593247

Identification of FPR3 as a Unique Biomarker for Targeted Therapy in the Immune Microenvironment of Breast Cancer
Cited by: 7
Author(s): Jian Qi, Yu Liu, Jiliang Hu, Li Lu, Zhen Dou, Haiming Dai, Hongzhi Wang, Wulin Yang
Software Mentions: 6
Published: almost 4 years ago

10.1002/cam4.4161

Integrated pan‐cancer of AURKA expression and drug sensitivity analysis reveals increased expression of AURKA is responsible for drug resistance
Cited by: 12
Author(s): Noushin Miralaei, Ahmad Majd, Kamran Ghaedi, Maryam Peymani, Masoomeh Safaei
Software Mentions: 6
Published: over 3 years ago

10.3389/fimmu.2021.722479

Human Mitochondrial Ribosomal RNA Modification-Based Classification Contributes to Discriminate the Prognosis and Immunotherapy Response of Glioma Patients
Cited by: 1
Author(s): Peng Wang, Jingying Li, Minxian Wu, Minghua Ye, Kai Huang, Xiang Yang Zhu
Software Mentions: 6
Published: over 3 years ago

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Papers Mentioning maftools 288