Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: maftools
https://packages.ecosyste.ms/registries/bioconductor.org/packages/maftools
Summarize, Analyze and Visualize MAF Files
2 versions
Latest release: about 1 year ago
8 dependent packages
197,658 downloads total
Papers Mentioning maftools 288
10.3389/fimmu.2021.659444
Development and Validation of a CD8+ T Cell Infiltration-Related Signature for Melanoma PatientsCited by: 13
Author(s): Yuan Yuan, Zheng Zhu, Ying Lan, Saili Duan, Zijue Zhu, Xi Zhang, Guoyin Li, Hui Qü, Yao Feng, Hui Cai, Zewen Song
Software Mentions: 24
Published: over 3 years ago
10.1016/j.xcrm.2020.100128
The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of CancerCited by: 32
Author(s): Derek J. Essegian, Rimpi Khurana, Vasileios Stathias, Stephan C. Schürer
Software Mentions: 21
Published: about 4 years ago
10.3389/fcell.2020.596679
Development and Validation of a Combined Ferroptosis and Immune Prognostic Classifier for Hepatocellular CarcinomaCited by: 77
Author(s): Yang Liu, Xi Zhang, Junjun Zhang, Juan Tan, Jie Li, Zewen Song
Software Mentions: 16
Published: almost 4 years ago
10.3389/fonc.2021.690129
A Tumor Progression Related 7-Gene Signature Indicates Prognosis and Tumor Immune Characteristics of Gastric CancerCited by: 6
Author(s): Fen Liu, Zongcheng Yang, Lixin Zheng, Wei Shao, Xiujie Cui, Yue Wang, Jihui Jia, Yue Fu
Software Mentions: 16
Published: over 3 years ago
10.1186/s12967-021-02773-x
Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer typesCited by: 5
Author(s): Guoshu Bi, Jiaqi Liang, Yuansheng Zheng, Runmei Li, Mengnan Zhao, Yiwei Huang, Cheng Zhan, Songtao Xu, Hong Fan
Software Mentions: 15
Published: over 3 years ago
10.3389/fcell.2021.671736
Identification of a Novel Immune Landscape Signature for Predicting Prognosis and Response of Endometrial Carcinoma to Immunotherapy and ChemotherapyCited by: 6
Author(s): Jinhui Liu, Yichun Wang, Jie Mei, Song Nie, Yan Zhang
Software Mentions: 15
Published: over 3 years ago
10.1186/s12967-021-02894-3
Identification of immune subtypes of cervical squamous cell carcinoma predicting prognosis and immunotherapy responsesCited by: 8
Author(s): Yimin Li, Shun Lü, Shubin Wang, Xinhao Peng, Jinyi Lang
Software Mentions: 14
Published: over 3 years ago
10.3389/fgene.2021.702072
Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic CancerCited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: about 3 years ago
10.1155/2020/8833972
An Epithelial-Mesenchymal Transition (EMT) Preoperative Nomogram for Prediction of Lymph Node Metastasis in Bladder Cancer (BLCA)Cited by: 5
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 14
Published: about 4 years ago
10.18632/aging.203353
Development and validation of an intra-tumor heterogeneity-related signature to predict prognosis of bladder cancer: a study based on single-cell RNA-seqCited by: 7
Author(s): Ranran Zhou, Jingjing Liang, Qi Chen, Haijun Tian, Cheng Yang, Cundong Liu
Software Mentions: 14
Published: over 3 years ago
10.3389/fimmu.2021.557994
Investigation of Genetic Determinants of Glioma Immune Phenotype by Integrative Immunogenomic Scale AnalysisCited by: 10
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Congxin Dai
Software Mentions: 14
Published: over 3 years ago
10.1038/s41598-021-97362-9
N6-methylandenosine-related lncRNAs play an important role in the prognosis and immune microenvironment of pancreatic ductal adenocarcinomaCited by: 5
Author(s): Yuhai Hu, Yiping Chen
Software Mentions: 14
Published: about 3 years ago
10.1186/s12967-021-02889-0
Pan-cancer characterization of metabolism-related biomarkers identifies potential therapeutic targetsCited by: 6
Author(s): Guoshu Bi, Yunyi Bian, Jiaqi Liang, Jiacheng Yin, Runmei Li, Mengnan Zhao, Yiwei Huang, Tao Lu, Cheng Zhan, Hong Fan, Qun Wang
Software Mentions: 13
Published: over 3 years ago
10.3389/fonc.2020.01317
The Potential of Five Immune-Related Prognostic Genes to Predict Survival and Response to Immune Checkpoint Inhibitors for Soft Tissue Sarcomas Based on Multi-Omic StudyCited by: 17
Author(s): Hao Gu, Lu-Lu Lin, Zhang Chao, Min Yang, Hongshan Zhong, Renxiong Wei
Software Mentions: 13
Published: over 4 years ago
10.18632/aging.202831
Seven interferon gamma response genes serve as a prognostic risk signature that correlates with immune infiltration in lung adenocarcinomaCited by: 11
Author(s): Boyang Yao, Lixin Wang, Heyong Wang, Jinxia Bao, Qiwen Li, Fengzhi Yu, Wenjing Zhu, Li Zhang, Wang Li, Gu Zhan, Ke Fei, Peng Zhang, Fan Zhang, Xiaoying Huang
Software Mentions: 13
Published: over 3 years ago
10.1186/s12935-021-01900-4
Role of tumor mutation burden-related signatures in the prognosis and immune microenvironment of pancreatic ductal adenocarcinomaCited by: 16
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Yu Lei, Si Shi
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.10255
Comprehensive genomic analysis of microenvironment phenotypes in ovarian cancerCited by: 4
Author(s): Jingshu Wang, Tingting Zhang, Lina Yang, Gong Yang
Software Mentions: 12
Published: almost 4 years ago
10.3390/ijms20225621
APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved SurvivalCited by: 45
Author(s): Mariko Asaoka, Takashi Ishikawa, Kazuaki Takabe, Santosh K. Patnaik
Software Mentions: 11
Published: almost 5 years ago
10.18632/oncotarget.22928
Comparing the genomes of cutaneous melanoma tumors to commercially available cell linesCited by: 10
Author(s): Stephen A. Luebker, Weiwei Zhang, Scott A. Koepsell
Software Mentions: 11
Published: almost 7 years ago
10.3389/fonc.2020.570654
Prognostic Role of Tumor Mutation Burden Combined With Immune Infiltrates in Skin Cutaneous Melanoma Based on Multi-Omics AnalysisCited by: 16
Author(s): Junya Yan, Xiaowen Wu, Jiayi Yu, Yanyan Zhu, Shundong Cang
Software Mentions: 11
Published: almost 4 years ago
10.3390/ijms221910302
The Impact of m1A Methylation Modification Patterns on Tumor Immune Microenvironment and Prognosis in Oral Squamous Cell CarcinomaCited by: 17
Author(s): Li Gao, Ru Chen, Masahiro Sugimoto, Masanobu Mizuta, Yo Kishimoto, Koichi Omori
Software Mentions: 11
Published: about 3 years ago
10.1111/jcmm.16552
Identification of autophagy‐related genes signature predicts chemotherapeutic and immunotherapeutic efficiency in bladder cancer (BLCA)Cited by: 8
Author(s): Rui Cao, Bo Ma, Gang Wang, Yaoyi Xiong, Ye Tian, Lushun Yuan
Software Mentions: 11
Published: over 3 years ago
10.3389/pore.2021.1609852
Identification of a Gene Prognostic Model of Gastric Cancer Based on Analysis of Tumor Mutation BurdenCited by: 9
Author(s): Weijun Ma, Weidong Li, Xu Liu, Lu Liu, Xinbing Yu, Liping Yang, Mingxu Da
Software Mentions: 11
Published: about 3 years ago
10.1038/s41408-019-0199-3
Deciphering the chronology of copy number alterations in Multiple MyelomaCited by: 35
Author(s): Anıl Aktaş Samur, Stéphane Minvielle, Masood A. Shammas, Mariateresa Fulciniti, Florence Magrangeas, Paul G. Richardson, Philippe Moreau, Michel Attal, Kenneth C. Anderson, Giovanni Parmigiani, Hervé Avet‐Loiseau, Nikhil C. Munshi, Mehmet K. Samur
Software Mentions: 11
Published: over 5 years ago
10.18632/aging.203257
Characterization of ferroptosis signature to evaluate the predict prognosis and immunotherapy in glioblastomaCited by: 14
Author(s): Xiaopeng Zhu, Yuxiang Zhou, Yangqian Ou, Zebo Cheng, Deqing Han, Zhou Chu, Sian Pan
Software Mentions: 10
Published: over 3 years ago
10.3389/fonc.2021.643465
Identification of the Roles of a Stemness Index Based on mRNA Expression in the Prognosis and Metabolic Reprograming of Pancreatic Ductal AdenocarcinomaCited by: 6
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 10
Published: over 3 years ago
10.3389/fgene.2021.692953
Identification of the Real Hub Gene and Construction of a Novel Prognostic Signature for Pancreatic Adenocarcinoma Based on the Weighted Gene Co-expression Network Analysis and Least Absolute Shrinkage and Selection Operator AlgorithmsCited by: 15
Author(s): Qihang Yuan, Jie Ren, Zhizhou Wang, Ji Li, Dawei Deng, Dong Shang
Software Mentions: 10
Published: about 3 years ago
10.3389/fcell.2021.676485
The Pyroptosis-Related Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Gastric CancerCited by: 116
Author(s): Wei Shao, Zongcheng Yang, Yue Fu, Lixin Zheng, Fen Liu, Li Chai, Jihui Jia
Software Mentions: 10
Published: over 3 years ago
10.7717/peerj.9624
Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancerCited by: 12
Author(s): Zhi Zeng, Daxing Xie, Jianping Gong
Software Mentions: 10
Published: over 4 years ago
10.1002/1878-0261.12747
Identification and validation of a combined hypoxia and immune index for triple‐negative breast cancerCited by: 57
Author(s): Shaoquan Zheng, Yutian Zou, Jie Liang, Weikai Xiao, Anli Yang, Tiebao Meng, Shilin Lu, Zhong-Bing Luo, Xiaoming Xie
Software Mentions: 10
Published: over 4 years ago
10.1038/s41422-020-00451-z
Sequential fate-switches in stem-like cells drive the tumorigenic trajectory from human neural stem cells to malignant gliomaCited by: 38
Author(s): Xiaofei Wang, Ran Zhou, Yanzhen Xiong, Lingling Zhou, Xiang Yan, Manli Wang, Li Fan, Chuanxing Xie, Yiming Zhang, Zongyao Huang, Chaoqiong Ding, Ke Shi, Weida Li, Liu Yu, Cao Zeyi, Zhenning Zhang, Shengtao Zhou, Chong Chen, Yan Zhang, Lu Chen, Yuan Wang
Software Mentions: 10
Published: almost 4 years ago
10.1007/s00262-020-02817-z
Immune signature-based risk stratification and prediction of immune checkpoint inhibitor’s efficacy for lung adenocarcinomaCited by: 85
Author(s): Ming Yi, An‐Ping Li, Linghui Zhou, Qian Chu, Suxia Luo, Kongming Wu
Software Mentions: 10
Published: almost 4 years ago
10.3389/fonc.2020.602498
Metabolism-Associated Molecular Classification of Colorectal CancerCited by: 13
Author(s): Meng Zhang, Haizhou Wang, Ruyi Peng, Fei Xu, Fan Wang, Qiu Zhao
Software Mentions: 9
Published: almost 4 years ago
10.3389/fimmu.2021.719628
Comprehensive Characterization of RNA Processing Factors in Gastric Cancer Identifies a Prognostic Signature for Predicting Clinical Outcomes and Therapeutic ResponsesCited by: 17
Author(s): Shenghan Lou, Fanzheng Meng, Xin Yin, Yao Zhang, Bangling Han, Yingwei Xue
Software Mentions: 9
Published: over 3 years ago
10.1186/s12943-020-01170-0
m6A regulator-mediated methylation modification patterns and tumor microenvironment infiltration characterization in gastric cancerCited by: 600
Author(s): Bo Zhang, Qiong Wu, Ben Li, Defeng Wang, Lei Wang, You Zhou
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0221235
Computational tools to detect signatures of mutational processes in DNA from tumours: A review and empirical comparison of performanceCited by: 42
Author(s): Hanane Omichessan, Gianluca Severi, Vittorio Perduca
Software Mentions: 9
Published: about 5 years ago
10.3389/fgene.2021.623424
Correlations Between Tumor Mutation Burden and Immunocyte Infiltration and Their Prognostic Value in Colon CancerCited by: 17
Author(s): Zhangjian Zhou, Xin Xie, Xuan Wang, Xin Zhang, Wenxin Li, Tuanhe Sun, Yifan Cai, Jianhua Wu, Chengxue Dang, Hao Zhang
Software Mentions: 9
Published: over 3 years ago
10.1186/s12890-021-01588-2
A novel ferroptosis-related genes model for prognosis prediction of lung adenocarcinomaCited by: 9
Author(s): Fēi Li, Dongcen Ge, Shulan Sun
Software Mentions: 9
Published: over 3 years ago
10.3389/fonc.2020.573141
Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous MelanomaCited by: 57
Author(s): Kai Kang, Fucun Xie, Jianshan Mao, Yi Bai, Xiang Wang
Software Mentions: 9
Published: about 4 years ago
10.1016/j.celrep.2019.11.077
Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine FibroidsCited by: 42
Author(s): Jitu W. George, Huihui Fan, Benjamin K. Johnson, Tyler J. Carpenter, Kelly K. Foy, Anindita Chatterjee, Amanda L. Patterson, Julie Koeman, Marie Adams, Zachary Madaj, David Chesla, Erica E. Marsh, Timothy J. Triche, Hui Shen, Jose Teixeira
Software Mentions: 9
Published: almost 5 years ago
10.3389/fcell.2021.704242
Two Similar Signatures for Predicting the Prognosis and Immunotherapy Efficacy of Stomach Adenocarcinoma PatientsCited by: 4
Author(s): Taohua Yue, Shuai Zuo, Jing Zhu, Shuqin Guo, Zhihao Huang, Jichang Li, Xin Wang, Yucun Liu, Shanwen Chen, Pengyuan Wang
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2021.650554
Exploration of the Role of m6 A RNA Methylation Regulators in Malignant Progression and Clinical Prognosis of Ovarian CancerCited by: 4
Author(s): Qinglv Wei, Dan Yang, Xiaoyi Liu, Hongyan Zhao, Yang Yu, Jing Xu, Tao Liu, Ping Yi
Software Mentions: 8
Published: over 3 years ago
10.3389/fmolb.2021.675198
A High Epigenetic Risk Score Shapes the Non-Inflamed Tumor Microenvironment in Breast CancerCited by: 1
Author(s): Dong Zhang, Yingnan Wang, Qifeng Yang
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-021-98966-x
Identification of immune-related subtypes of colorectal cancer to improve antitumor immunotherapyCited by: 4
Author(s): Xiangkuo Zheng, Yong Gao, Chunhua Yu, Guiquan Fan, Pengwu Li, Ming Zhang, Jian Yu, Mingqing Xu
Software Mentions: 8
Published: about 3 years ago
10.3389/fcell.2021.712230
A Novel Ferroptosis-Related Prognostic Signature Reveals Macrophage Infiltration and EMT Status in Bladder CancerCited by: 19
Author(s): Yi‐Lin Yan, Jinming Cai, Zhengnan Huang, Xiangqian Cao, Pengyu Tang, Zeyi Wang, Fang Zhang, Shujie Xia, Bing Shen
Software Mentions: 8
Published: about 3 years ago
10.7150/ijms.51064
Tumor Mutation Burden, Immune Cell Infiltration, and Construction of Immune-Related Genes Prognostic Model in Head and Neck CancerCited by: 32
Author(s): Aimin Jiang, Mengdi Ren, Na Liu, Huan Gao, Jingjing Wang, Xiaoqiang Zheng, Xiao Fu, Xuan Liu, Zhiping Ruan, Tao Tian, Yu Yao
Software Mentions: 8
Published: almost 4 years ago
10.18632/aging.203266
Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinomaCited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: over 3 years ago
10.1186/s12967-021-03065-0
Comprehensive analysis of EMT-related genes and lncRNAs in the prognosis, immunity, and drug treatment of colorectal cancerCited by: 28
Author(s): Yang Yang, Mingyang Feng, Liangliang Bai, Wei‐Ting Liao, Kaiyu Zhou, Mengxi Zhang, Qiuji Wu, Feng Wen, Wenhua Lei, Pengfei Zhang, Nan Zhang, Jiaxing Huang, Li Qiu
Software Mentions: 8
Published: about 3 years ago
10.1186/s12964-021-00728-9
Multi-omics analysis of tumor angiogenesis characteristics and potential epigenetic regulation mechanisms in renal clear cell carcinomaCited by: 28
Author(s): Wenzhong Zheng, Shiqiang Zhang, Huan Guo, Xiaobao Chen, Zhangcheng Huang, Shaoqin Jiang, Mengqiang Li
Software Mentions: 8
Published: over 3 years ago
10.3389/fcell.2021.710207
Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular CarcinomaCited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: over 3 years ago
10.18632/aging.202670
A novel panel based on immune infiltration and tumor mutational burden for prognostic prediction in hepatocellular carcinomaCited by: 5
Author(s): Chengzhi Xie, Hewei Wu, Tao Pan, Xingrong Zheng, Xiaoàn Yang, Genglin Zhang, Yunwen Lian, Jiaxin Lin, Liang Peng
Software Mentions: 8
Published: over 3 years ago
10.3390/jpm11020154
Comprehensive Profiling of Genomic and Transcriptomic Differences between Risk Groups of Lung Adenocarcinoma and Lung Squamous Cell CarcinomaCited by: 19
Author(s): Talip Zengin, Tuğba Önal-Süzek
Software Mentions: 8
Published: over 3 years ago
10.1186/s12967-021-03076-x
A novel immune subtype classification of ER-positive, PR-negative and HER2-negative breast cancer based on the genomic and transcriptomic landscapeCited by: 4
Author(s): Peiling Xie, Rui An, Shibo Yu, Jing He, Huimin Zhang
Software Mentions: 8
Published: about 3 years ago
10.1186/s12864-021-07895-6
Identification of ferroptosis genes in immune infiltration and prognosis in thyroid papillary carcinoma using network analysisCited by: 26
Author(s): Rui-Qing Lin, Conor E. Fogarty, Bao‐Qing Ma, Hejie Li, Guoying Ni, Xiaosong Liu, Jing Yuan, Tianfang Wang
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2021.737656
Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast CancerCited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: about 3 years ago
10.1186/s12935-021-01774-6
Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinomaCited by: 14
Author(s): Ling Zhao, Xueshu Fu, Xiling Han, Yu Yao, Yaping Ye, Jun Gao
Software Mentions: 7
Published: almost 4 years ago
10.3389/fonc.2021.729340
Tumor Mutation Burden-Associated LINC00638/miR-4732-3p/ULBP1 Axis Promotes Immune Escape via PD-L1 in Hepatocellular CarcinomaCited by: 15
Author(s): Qi Feng, Xiaojing Du, Zhiying Zhao, Ding Zhang, Mengli Huang, Yuezong Bai, Biwei Yang, Wenxing Qin, Jinglin Xia
Software Mentions: 7
Published: about 3 years ago
10.3389/fonc.2020.01409
Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade GliomaCited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: about 4 years ago
10.3389/fonc.2021.632459
Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder CancerCited by: 3
Author(s): Ruiliang Wang, Zongtai Zheng, Shun Mao, Wentao Zhang, Ji Liu, Cheng Li, Shenghua Liu, Xudong Yao
Software Mentions: 7
Published: over 3 years ago
10.3389/fgene.2021.639642
Immune-Related Genes Are Prognostic Markers for Prostate Cancer RecurrenceCited by: 10
Author(s): Min Fu, Qiang Wang, Hanbo Wang, Ying Dai, Jin Wang, Weiting Kang, Zilian Cui, Xunbo Jin
Software Mentions: 7
Published: about 3 years ago
10.3389/fgene.2020.00634
Construction of a Comprehensive Multiomics Map of Hepatocellular Carcinoma and Screening of Possible Driver GenesCited by: 6
Author(s): Ziyu Liu, Yan Lin, Xing Gao, Rongyun Mai, Xuemin Piao, Jiazhou Ye, Rong Liang
Software Mentions: 7
Published: over 4 years ago
10.3389/fcell.2021.668810
Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell CarcinomaCited by: 3
Author(s): Qianqian Wang, Ting Xiang, Ling Yu, Junping Wen, Fang Liu, Dong Yang, Wei Wu, Ling Hu
Software Mentions: 7
Published: about 3 years ago
10.3389/fcell.2021.665364
Hypoxia Constructing the Prognostic Model of Colorectal Adenocarcinoma and Related to the Immune MicroenvironmentCited by: 11
Author(s): Yuanyuan Zhang, Feng Yang, Xiaohong Peng, Xiaoyü Li, Na Luo, Wenjun Zhu, Min Fu, Qianxia Li, Guangyuan Hu
Software Mentions: 7
Published: over 3 years ago
10.3389/fmolb.2020.00053
Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory TherapyCited by: 1
Author(s): Yong Xu, Daixi Li, Zhenhao Liu, David L. Gibbs, Lu Xie, Guangrong Qin
Software Mentions: 7
Published: over 4 years ago
10.3389/fmolb.2020.562441
Novel Molecular Subtypes Associated With 5mC Methylation and Their Role in Hepatocellular Carcinoma ImmunotherapyCited by: 12
Author(s): Zhuomao Mo, Zhirui Cao, Shaoju Luo, Yan Chen, Shijun Zhang
Software Mentions: 7
Published: about 4 years ago
10.3389/fimmu.2021.672158
Analysis of Tumor Microenvironment Characteristics in Bladder Cancer: Implications for Immune Checkpoint Inhibitor TherapyCited by: 21
Author(s): Xingyu Chen, Haotian Chen, Dong He, Ying Cheng, Yuxing Zhu, Mengqing Xiao, Hua Lan, Zhanwang Wang, Ke Cao
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pgen.1009201
Genomic and transcriptomic landscape of conjunctival melanomaCited by: 14
Author(s): Katarina Cisarova, Marc Folcher, Ikram El Zaoui, Rosanna Pescini Gobert, Virginie G. Peter, Béryl Royer‐Bertrand, Léonidas Zografos, Ann Schalenbourg, Michaël Nicolas, Donata Rimoldi, Serge Leyvraz, Nicolò Riggi, Alexandre Moulin, Carlo Rivolta
Software Mentions: 7
Published: almost 4 years ago
10.3389/fmolb.2021.624951
Metabolism-Relevant Molecular Classification Identifies Tumor Immune Microenvironment Characterization and Immunotherapeutic Effect in Cervical CancerCited by: 4
Author(s): Luyi Li, Hui Gao, Danhan Wang, Hao Jiang, Hongzhu Wang, Jiajian Yu, Xin Jiang, Changjiang Huang
Software Mentions: 7
Published: over 3 years ago
10.1007/s12020-020-02434-x
Using The Cancer Genome Atlas data to refine the 8th edition of the American Joint Committee on Cancer staging for papillary thyroid carcinomaCited by: 3
Author(s): Anello Marcello Poma, Elisabetta Macerola, Liborio Torregrossa, Rossella Elisei, Ferruccio Santini, Fulvio Basolo
Software Mentions: 7
Published: about 4 years ago
10.3389/fimmu.2020.01900
Biomarkers of the Response to Immune Checkpoint Inhibitors in Metastatic Urothelial CarcinomaCited by: 5
Author(s): Siteng Chen, Ning Zhang, Tao Wang, Encheng Zhang, Xiang Wang, Junhua Zheng
Software Mentions: 7
Published: about 4 years ago
10.1111/jcmm.15877
RAD51AP1 promotes progression of ovarian cancer via TGF‐β/Smad signalling pathwayCited by: 17
Author(s): Hongyu Zhao, Yan Gao, Qi Chen, Jie Li, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 7
Published: almost 4 years ago
10.3389/fcell.2021.618313
Long Non-coding RNA Expression Patterns in Stomach Adenocarcinoma Serve as an Indicator of Tumor Mutation Burden and Are Associated With Tumor-Infiltrating Lymphocytes and Microsatellite InstabilityCited by: 6
Author(s): Dongdong Yang, Jianan Yu, Bing Han, Yue Sun, Steven Mo, Jing Hu
Software Mentions: 7
Published: over 3 years ago
10.3390/cancers13071730
Identification and Validation of an Immune-Associated RNA-Binding Proteins Signature to Predict Clinical Outcomes and Therapeutic Responses in Glioma PatientsCited by: 11
Author(s): Ruotong Tian, Yimin Li, Qian Liu, Minfeng Shu
Software Mentions: 7
Published: over 3 years ago
10.1186/s12894-021-00795-7
Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancerCited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: over 3 years ago
10.7150/thno.52717
m<sup>6</sup>A regulator-based methylation modification patterns characterized by distinct tumor microenvironment immune profiles in colon cancerCited by: 135
Author(s): Wei Chong, Liang Shang, Jin Liu, Zhen Fang, Fengying Du, Hao Wu, Liu Yang, Zhe Wang, Chen Yang, Shengtao Jia, Liming Chen, Leping Li, Hao Chen
Software Mentions: 7
Published: almost 4 years ago
10.1111/jcmm.16395
STAT1 is a key gene in a gene regulatory network related to immune phenotypes in bladder cancer: An integrative analysis of multi‐omics dataCited by: 1
Author(s): Hong Weng, Shuai Yuan, Qiao Huang, Xian‐Tao Zeng, Xinghuan Wang
Software Mentions: 7
Published: over 3 years ago
10.1186/s13045-018-0679-0
Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathwaysCited by: 31
Author(s): Benoît Tessoulin, Agnès Moreau-Aubry, Géraldine Descamps, Patricia Gomez‐Bougie, Sophie Maïga, Alban Gaignard, David Chiron, Emmanuelle Ménoret, Steven Le Gouill, Philippe Moreau, Martine Amiot, Catherine Pellat‐Deceunynck
Software Mentions: 6
Published: almost 6 years ago
10.7150/ijms.51918
Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinomaCited by: 3
Author(s): Rong Ouyang, Zhongzhuan Li, Peng Peng, Jinxiu Zhang, Jun Li, Mengbin Qin, Jiean Huang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12935-021-02049-w
Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinomaCited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: over 3 years ago
10.1186/s12935-021-02027-2
Characterization of a ferroptosis and iron-metabolism related lncRNA signature in lung adenocarcinomaCited by: 48
Author(s): Jie Yao, Xiao Chen, Xiao Liu, Rui Li, Xi-Jia Zhou, Yi-Qing Qu
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2021.642608
Significance of Tumor Mutation Burden Combined With Immune Infiltrates in the Progression and Prognosis of Advanced Gastric CancerCited by: 18
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Han Zhang, Chuan Qin, Ziwei Wang
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.732447
Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular CarcinomaCited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: about 3 years ago
10.1186/s13046-019-1372-z
Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancerCited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: about 5 years ago
10.1186/s12885-020-6702-1
Identification of immune cells and mRNA associated with prognosis of gastric cancerCited by: 35
Author(s): Mingming Wang, Zedong Li, Pei Yu, Jianyu Fang, Tao Fang, Jiajia Wu, Jun Zhou
Software Mentions: 6
Published: over 4 years ago
10.3389/fgene.2021.739975
Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular CarcinomaCited by: 7
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 6
Published: about 3 years ago
10.3389/fgene.2021.678747
Identification of CXCL10-Relevant Tumor Microenvironment Characterization and Clinical Outcome in Ovarian CancerCited by: 5
Author(s): Jing Jin, Yang Li, Tobias Achu Muluh, Liangke Zhi, Qijie Zhao
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.685065
Comprehensive Landscape of Ovarian Cancer Immune Microenvironment Based on Integrated Multi-Omics AnalysisCited by: 4
Author(s): Jiacheng Shen, Tingwei Liu, Qiaoli Bei, Shaohua Xu
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.632430
Genomic Alteration Characterization in Colorectal Cancer Identifies a Prognostic and Metastasis Biomarker: FAM83A|IDO1Cited by: 29
Author(s): Zaoqu Liu, Yuyuan Zhang, Qin Dang, Kunpeng Wu, Dechao Jiao, Zhen Li, Zhenqiang Sun, Xinwei Han
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0205406
Examining the contribution of smoking and HPV towards the etiology of oral cavity squamous cell carcinoma using high-throughput sequencing: A prospective observational studyCited by: 10
Author(s): Andrew P Zammit, Rohit Anthony Sinha, Caroline Cooper, Christopher Perry, Ian H. Frazer, Zewen Kelvin Tuong
Software Mentions: 6
Published: about 6 years ago
10.3389/fcell.2021.717601
Tumor Immune Microenvironment Landscape in Glioma Identifies a Prognostic and Immunotherapeutic SignatureCited by: 5
Author(s): Chunyu Zhang, Lirui Guo, Zhongzhou Su, Na Luo, Yinqiu Tan, Pengfei Xu, Liguo Ye, Shiao Tong, Haitao Liu, Xiaobin Li, Qianxue Chen, Daofeng Tian
Software Mentions: 6
Published: about 3 years ago
10.18632/aging.202182
KRAS mutations are negatively correlated with immunity in colon cancerCited by: 8
Author(s): Xiaorui Fu, Xinyi Wang, Jinzhong Duanmu, Taiyuan Li, Qunguang Jiang
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-021-98414-w
Integrated genomics point to immune vulnerabilities in pleural mesotheliomaCited by: 7
Author(s): Anca Năstase, Amit Kumar Mandal, Shir Kiong Lu, Hima Anbunathan, Deborah Morris-Rosendahl, Yu Zhi Zhang, Xiaoming Sun, Spyridon Gennatas, Robert C. Rintoul, Matthew Edwards, Alex Bowman, Tatyana Chernova, T. Benepal, Eric Lim, Alison Taylor, Andrew G. Nicholson, Sanjay Popat, Anne E. Willis, Marion MacFarlane, Mark Lathrop, Anne M. Bowcock, Miriam F. Moffatt, William Cookson
Software Mentions: 6
Published: about 3 years ago
10.1155/2020/1686480
miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell CarcinomaCited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-018-33498-5
Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancerCited by: 28
Author(s): Raquel L. Costa, Mariana Boroni, Marcelo A. Soares
Software Mentions: 6
Published: about 6 years ago
10.1002/1878-0261.12709
HPV‐related methylation‐based reclassification and risk stratification of cervical cancerCited by: 25
Author(s): Shuanying Yang, Ying Wu, Shuqian Wang, Peng Xu, Yao Deng, Meng Wang, Kang Liu, Tian Tian, Yuyao Zhu, Na Li, Linghui Zhou, Zhijun Dai, Huafeng Kang
Software Mentions: 6
Published: over 4 years ago
10.3389/fcell.2021.625212
Clinical Significance of a Novel Tumor Progression-Associated Immune Signature in Colorectal AdenocarcinomaCited by: 3
Author(s): Rui Mao, Fan Yang, Wei Zheng, Chang Xu, Qian Liu, Yanjun Liu, Tongtong Zhang
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2020.578933
Comprehensive Analysis of Prognostic Markers for Acute Myeloid Leukemia Based on Four Metabolic GenesCited by: 7
Author(s): Yuanyuan Zhang, Shuai Ma, Moran Wang, Wei Shi, Yu Hu
Software Mentions: 6
Published: about 4 years ago
10.3389/fphar.2020.593247
Identification of FPR3 as a Unique Biomarker for Targeted Therapy in the Immune Microenvironment of Breast CancerCited by: 7
Author(s): Jian Qi, Yu Liu, Jiliang Hu, Li Lu, Zhen Dou, Haiming Dai, Hongzhi Wang, Wulin Yang
Software Mentions: 6
Published: over 3 years ago
10.1002/cam4.4161
Integrated pan‐cancer of <i>AURKA</i> expression and drug sensitivity analysis reveals increased expression of <i>AURKA</i> is responsible for drug resistanceCited by: 12
Author(s): Noushin Miralaei, Ahmad Majd, Kamran Ghaedi, Maryam Peymani, Masoomeh Safaei
Software Mentions: 6
Published: over 3 years ago
10.3389/fimmu.2021.722479
Human Mitochondrial Ribosomal RNA Modification-Based Classification Contributes to Discriminate the Prognosis and Immunotherapy Response of Glioma PatientsCited by: 1
Author(s): Peng Wang, Jingying Li, Minxian Wu, Minghua Ye, Kai Huang, Xiang Yang Zhu
Software Mentions: 6
Published: about 3 years ago