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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12964-021-00728-9

https://doi.org/10.1186/s12964-021-00728-9

Multi-omics analysis of tumor angiogenesis characteristics and potential epigenetic regulation mechanisms in renal clear cell carcinoma

Cited by: 28
Author(s): Wenzhong Zheng, Shiqiang Zhang, Huan Guo, Xiaobao Chen, Zhangcheng Huang, Shaoqin Jiang, Mengqiang Li
Published: over 4 years ago

Software Mentions 8

bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
Very Likely Science (100)
bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
Likely Science (50)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
Papers that mentioned: 19
Very Likely Science (100)
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
Very Likely Science (100)
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
Very Likely Science (100)
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
Very Likely Science (100)
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
Very Likely Science (100)