Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2021.557994

https://doi.org/10.3389/fimmu.2021.557994

Cited by: 10
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Congxin Dai
Published: almost 3 years ago

Software Mentions 14

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenVisR
Genomic Visualizations in R
Papers that mentioned: 54
bioconductor: GSEABase
Gene set enrichment data structures and methods
Papers that mentioned: 79
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: GET
Global Envelopes
Papers that mentioned: 89
cran: ggalluvial
Alluvial Plots in 'ggplot2'
Papers that mentioned: 57
pypi: circus
Circus is a program that will let you run and watch multiple processes and sockets.
Papers that mentioned: 6
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893