Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: circlize

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/circlize

Circular Visualization
45 versions
Latest release: over 2 years ago
58 dependent packages
26,201 downloads last month

Papers Mentioning circlize 260

10.3390/ijms22063251
Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
Cited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: almost 4 years ago
10.3389/fonc.2020.617890
Comparative Proteome Identifies Complement Component 3-Mediated Immune Response as Key Difference of Colon Adenocarcinoma and Rectal Adenocarcinoma
Cited by: 9
Author(s): Jun-Ze Liang, Xiaoling Liang, Liye Zhong, Chutian Wu, Jing Zhang, Yang Wang
Software Mentions: 30
Published: almost 4 years ago
10.3389/fimmu.2021.701085
A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 Patients
Cited by: 29
Author(s): Florian Bieberich, Rodrigo Vazquez-Lombardi, Alexander Yermanos, Roy Ehling, Derek M Mason, Bastian Wagner, Edo Kapetanovic, Raphaël Brisset Di Roberto, Cédric R. Weber, Miodrag Savic, Fabian Rudolf, Sai T. Reddy
Software Mentions: 23
Published: over 3 years ago
10.1038/s41598-020-78469-x
Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions
Cited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Software Mentions: 23
Published: about 4 years ago
10.1186/s13321-020-00477-w
patRoon: open source software platform for environmental mass spectrometry based non-target screening
Cited by: 76
Author(s): Rick Helmus, Thomas L. ter Laak, Annemarie P. van Wezel, P. de Voogt, Emma L. Schymanski
Software Mentions: 20
Published: almost 4 years ago
10.3390/v12101142
A Diverse Virome of Leafroll-Infected Grapevine Unveiled by dsRNA Sequencing
Cited by: 24
Author(s): Mamadou L. Fall, De-Xiang Xu, Pierre Lemoyne, Issam Moussa, Carole Beaulieu, Odile Carisse
Software Mentions: 19
Published: about 4 years ago
10.1155/2021/6613151
Genomic and Transcriptome Analysis to Identify the Role of the mTOR Pathway in Kidney Renal Clear Cell Carcinoma and Its Potential Therapeutic Significance
Cited by: 6
Author(s): Xiangyu Che, Xiaochen Qi, Yingkun Xu, Qifei Wang, Guangzhen Wu
Software Mentions: 19
Published: over 3 years ago
10.1016/j.cell.2020.12.016
Spatiotemporal analysis of human intestinal development at single-cell resolution
Cited by: 215
Author(s): David Fawkner-Corbett, Agne Antanaviciute, Kaushal Parikh, Marta Jagielowicz, Ana Sousa Gerós, Tarun Gupta, Neil Ashley, Doran Khamis, Darren J. Fowler, Edward Morrissey, Christine M. Cunningham, Johnson Prv., Hashem Koohy, Alison Simmons
Software Mentions: 18
Published: almost 4 years ago
10.3389/fimmu.2021.620270
Non-Genomic AhR-Signaling Modulates the Immune Response in Endotoxin-Activated Macrophages After Activation by the Environmental Stressor BaP
Cited by: 18
Author(s): Henning Großkopf, Katharina Walter, Isabel Karkossa, Martin von Bergen, Kristin Schubert
Software Mentions: 18
Published: almost 4 years ago
10.18632/aging.103499
Multi-omics network analysis reveals distinct stages in the human aging progression in epidermal tissue
Cited by: 16
Author(s): Nicholas Holzscheck, Jörn Söhle, Boris Kristof, Elke Grönniger, Stefan Gallinat, Horst Wenck, Marc Winnefeld, Cassandra Falckenhayn, Lars Kaderali
Software Mentions: 18
Published: over 4 years ago
10.3390/ijms21228837
Machine Learning Identifies Robust Matrisome Markers and Regulatory Mechanisms in Cancer
Cited by: 6
Author(s): Anni Kääriäinen, Vilma Pesola, Annalena Dittmann, Juho A. J. Kontio, Jarkko Koivunen, Taina Pihlajaniemi, Valerio Izzi
Software Mentions: 18
Published: about 4 years ago
10.3389/fgene.2019.00499
ABioTrans: A Biostatistical Tool for Transcriptomics Analysis
Cited by: 6
Author(s): Zou Yutong, Thuy Tien Bui, Kumar Selvarajoo
Software Mentions: 17
Published: over 5 years ago
10.3390/cells10092367
The Emerging Plasticizer Alternative DINCH and Its Metabolite MINCH Induce Oxidative Stress and Enhance Inflammatory Responses in Human THP-1 Macrophages
Cited by: 16
Author(s): Alexandra Schaffert, Josi Arnold, Isabel Karkossa, Matthias Blüher, Martin von Bergen, Kristin Schubert
Software Mentions: 16
Published: over 3 years ago
10.1038/s41419-021-03909-z
Diagnostic and prognostic potential of the proteomic profiling of serum-derived extracellular vesicles in prostate cancer
Cited by: 14
Author(s): Michele Signore, Romina Alfonsi, Giulia Federici, Simona Nanni, Antonio Addario, Lucia Bertuccini, Aurora Aiello, Anna Pace, Isabella Sperduti, Giovanni Muto, Alessandro Giacobbe, Devis Collura, Lidia Brunetto, Giuseppe Simone, Manuela Costantini, Lucio Crinò, Stefania Rossi, Claudio Tabolacci, Marco Diociaiuti, Tania Merlino, Michele Gallucci, Steno Sentinelli, Rocco Papalia, Ruggero De Maria, Dèsirèe Bonci
Software Mentions: 16
Published: over 3 years ago
10.1038/s41598-020-69683-8
Concomitant DNA methylation and transcriptome signatures define epidermal responses to acute solar UV radiation
Cited by: 5
Author(s): Nicholas Holzscheck, Jörn Söhle, T. Schläger, Cassandra Falckenhayn, Elke Grönniger, Ludger Kolbe, Horst Wenck, Lara Terstegen, Lars Kaderali, Marc Winnefeld, Katharina Gorges
Software Mentions: 16
Published: over 4 years ago
10.3390/genes12071044
CircIMPACT: An R Package to Explore Circular RNA Impact on Gene Expression and Pathways
Cited by: 3
Author(s): Alessia Buratin, Enrico Gaffo, Anna Dal Molin, Stefania Bortoluzzi
Software Mentions: 15
Published: over 3 years ago
10.1186/s12967-021-02773-x
Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types
Cited by: 5
Author(s): Guoshu Bi, Jiaqi Liang, Yuansheng Zheng, Runmei Li, Mengnan Zhao, Yiwei Huang, Cheng Zhan, Songtao Xu, Hong Fan
Software Mentions: 15
Published: almost 4 years ago
10.3390/cancers13123089
A Comprehensive Bioinformatics Analysis of Notch Pathways in Bladder Cancer
Cited by: 12
Author(s): Chuan Zhang, Mandy Berndt‐Paetz, Jochen Neuhaus
Software Mentions: 15
Published: over 3 years ago
10.3389/fimmu.2021.557994
Investigation of Genetic Determinants of Glioma Immune Phenotype by Integrative Immunogenomic Scale Analysis
Cited by: 10
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Congxin Dai
Software Mentions: 14
Published: over 3 years ago
10.1186/s12861-018-0163-7
Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells
Cited by: 4
Author(s): Anna Mantsoki, Guillaume Devailly, Anagha Joshi
Software Mentions: 13
Published: almost 7 years ago
10.1186/s13072-020-00380-6
Distinctive epigenomic alterations in NF1-deficient cutaneous and plexiform neurofibromas drive differential MKK/p38 signaling
Cited by: 7
Author(s): Jamie Grit, Benjamin K. Johnson, Patrick S. Dischinger, Curt J. Essenburg, Marie Adams, Stacy Campbell, Kai Pollard, Christine A. Pratilas, Tim Triche, Carrie R. Graveel, Matthew R. Steensma
Software Mentions: 13
Published: almost 4 years ago
10.1186/s12967-021-02889-0
Pan-cancer characterization of metabolism-related biomarkers identifies potential therapeutic targets
Cited by: 6
Author(s): Guoshu Bi, Yunyi Bian, Jiaqi Liang, Jiacheng Yin, Runmei Li, Mengnan Zhao, Yiwei Huang, Tao Lu, Cheng Zhan, Hong Fan, Qun Wang
Software Mentions: 13
Published: over 3 years ago
10.3390/genes9120569
NeVOmics: An Enrichment Tool for Gene Ontology and Functional Network Analysis and Visualization of Data from OMICs Technologies
Cited by: 13
Author(s): Eduardo Zúñiga-León, Ulises Carrasco-Navarro, Francisco Fierro
Software Mentions: 12
Published: about 6 years ago
10.3390/ijerph18094859
A Network Approach for the Study of Drug Prescriptions: Analysis of Administrative Records from a Local Health Unit (ASL TO4, Regione Piemonte, Italy)
Cited by: 2
Author(s): Gianluca Miglio, Lara Denise Basso, Lucrezia Greta Armando, Sara Traina, Elisa Benetti, Abdoulaye Diarassouba, Raffaella Baroetto Parisi, Mariangela Esiliato, Cristina Rolando, Elisa Remani, Clara Cena
Software Mentions: 12
Published: over 3 years ago
10.1038/s41421-021-00321-x
Dynamics of TCR repertoire and T cell function in COVID-19 convalescent individuals
Cited by: 23
Author(s): Lingjie Luo, Wenhua Liang, Jianfeng Pang, Gang Xu, Yingying Chen, Xinrong Guo, Xin Wang, Yi Zhao, Yang-dian Lai, Yang Liu, Bin Li, Bing Su, Shuye Zhang, Michal Baniyash, Lei Shen, Lei Chen, Yun Ling, Ying Wang, Qiming Liang, Hongzhou Lu, Zheng Zhang, Feng Wang
Software Mentions: 12
Published: over 3 years ago
10.7554/eLife.58993
Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns
Cited by: 23
Author(s): Kathleen Greenham, Ryan C. Sartor, Stevan Zorich, Ping Lou, Todd C. Mockler, C. Robertson McClung
Software Mentions: 12
Published: over 4 years ago
10.1186/s12859-021-04028-4
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Cited by: 12
Author(s): Bobby Ranjan, Florian Schmidt, Wenjie Sun, Jinyu Park, Mohammad Amin Honardoost, Joanna H.J. Tan, Nirmala Arul Rayan, Shyam Prabhakar
Software Mentions: 12
Published: over 3 years ago
10.1002/cam4.3907
MRPL15 is a novel prognostic biomarker and therapeutic target for epithelial ovarian cancer
Cited by: 21
Author(s): Haoya Xu, Ruoyao Zou, Feifei Li, Jiyu Liu, Nannan Luan, Shengke Wang, Liping Zhu
Software Mentions: 12
Published: over 3 years ago
10.3389/fonc.2021.625207
MYCN Drives a Tumor Immunosuppressive Environment Which Impacts Survival in Neuroblastoma
Cited by: 18
Author(s): Salvatore Raieli, Daniele Di Renzo, Silvia Lampis, Camilla Amadesi, Luca Montemurro, Andrea Pession, Patrizia Hrelia, Matthias Fischer, Roberto Tonelli
Software Mentions: 12
Published: almost 4 years ago
10.18632/aging.202317
Identification and validation of an immune-related gene signature predictive of overall survival in colon cancer
Cited by: 33
Author(s): Xuening Zhang, Hao Zhao, Xiaoguang Shi, Xiaocan Jia, Yongli Yang
Software Mentions: 12
Published: about 4 years ago
10.3389/fpls.2021.651936
Unraveling the Relationship Between Seed Yield and Yield-Related Traits in a Diversity Panel of Brassica juncea Using Multi-Traits Mixed Model
Cited by: 13
Author(s): Ranjit Saroj, S. L. Soumya, S. P. Singh, Surya Sankar, Rajat Chaudhary, . Yashpal, Neeru Saini, Sujata Vasudev, Devendra K. Yadava
Software Mentions: 12
Published: over 3 years ago
10.7554/eLife.49921
Combinatorial chromatin dynamics foster accurate cardiopharyngeal fate choices
Cited by: 21
Author(s): Claudia Racioppi, Keira A Wiechecki, Lionel Christiaen
Software Mentions: 11
Published: about 5 years ago
10.1038/s41598-021-96712-x
Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)
Cited by: 12
Author(s): César A. Medina, Deborah A. Samac, Long‐Xi Yu
Software Mentions: 11
Published: over 3 years ago
10.1038/s41598-021-92406-6
Plasma lipidomic analysis shows a disease progression signature in mdx mice
Cited by: 3
Author(s): Roula Tsonaka, Alexandre Seyer, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 11
Published: over 3 years ago
10.3389/fmicb.2019.02291
Reduced Gut Microbiome Diversity and Metabolome Differences in Rhinoceros Species at Risk for Iron Overload Disorder
Cited by: 25
Author(s): Terri L. Roth, Alexandra D. Switzer, Miki Watanabe-Chailland, Elisabeth M. Bik, David A. Relman, Lindsey E. Romick-Rosendale, Nicholas J. Ollberding
Software Mentions: 11
Published: about 5 years ago
10.3389/fimmu.2021.599207
Molecular and Clinical Characterization of LAG3 in Breast Cancer Through 2994 Samples
Cited by: 15
Author(s): Qiang Liu, Yihang Qi, Jie Zhai, Xiangyi Kong, Xiangyu Wang, Zhongzhao Wang, Yi Fang, Jing Wang
Software Mentions: 11
Published: over 3 years ago
10.3389/fgene.2020.00548
Rcirc: An R Package for circRNA Analyses and Visualization
Cited by: 8
Author(s): Peisen Sun, Haoming Wang, Guanglin Li
Software Mentions: 11
Published: over 4 years ago
10.1002/1878-0261.12747
Identification and validation of a combined hypoxia and immune index for triple‐negative breast cancer
Cited by: 57
Author(s): Shaoquan Zheng, Yutian Zou, Jie Liang, Weikai Xiao, Anli Yang, Tiebao Meng, Shilin Lu, Zhong-Bing Luo, Xiaoming Xie
Software Mentions: 10
Published: over 4 years ago
10.3389/fmicb.2021.643730
Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria
Cited by: 8
Author(s): Anneke Heins, Greta Reintjes, Rudolf Amann, Jens Harder
Software Mentions: 10
Published: over 3 years ago
10.1016/j.celrep.2020.107885
CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features
Cited by: 9
Author(s): Alexander Greenshields‐Watson, Meriem Attaf, Bruce J. MacLachlan, Thomas Whalley, Cristina Rius, Aaron Wall, Alun G. Lloyd, Hywel Hughes, Kathryn E. Strange, Georgina H Mason, Andrea J. A. Schauenburg, Sarah Hulin-Curtis, James Geary, Yuan Chen, Sarah N. Lauder, Kathryn Smart, Dhanasekaran Vijaykrishna, Miguel L. Grau, Mikhail Shugay, Robert Andrews, Garry Dolton, P.J. Rizkallah, Awen Gallimore, Andrew K. Sewell, Andrew Godkin, David K. Cole
Software Mentions: 10
Published: over 4 years ago
10.1093/bioinformatics/btv428
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Cited by: 1,079
Author(s): Tal Galili
Software Mentions: 10
Published: over 9 years ago
10.1038/srep43932
Implications of the cattle trade network in Cameroon for regional disease prevention and control
Cited by: 60
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Ian Handel, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Rob Christley, Barend M. deC. Bronsvoort
Software Mentions: 10
Published: almost 8 years ago
10.7554/eLife.54074
A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord
Cited by: 89
Author(s): Annette D. Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F. Goodwin
Software Mentions: 9
Published: over 4 years ago
10.3390/ijerph17197127
Relationship between Quality of Life and the Complexity of Default Mode Network in Resting State Functional Magnetic Resonance Image in Down Syndrome
Cited by: 6
Author(s): María Carbó‐Carreté, Cristina Cañete‐Massé, María Dolores Figueroa-Jiménez, Maribel Peró‐Cebollero, Joan Guàrdia‐Olmos
Software Mentions: 9
Published: over 4 years ago
10.18632/aging.202614
BDKRB2 is a novel EMT-related biomarker and predicts poor survival in glioma
Cited by: 8
Author(s): Ying Yang, Jin Wang, Fei Shi, Aijun Shan, Shi‐Hai Xu, Wen Lv
Software Mentions: 9
Published: almost 4 years ago
10.3389/fmicb.2021.649981
Differential Impacts of Water Table and Temperature on Bacterial Communities in Pore Water From a Subalpine Peatland, Central China
Cited by: 7
Author(s): Wen Tian, Xiang Xiao, Hongmei Wang
Software Mentions: 9
Published: over 3 years ago
10.3389/fnins.2020.00061
Regionally Distinct Astrocytes Display Unique Transcription Factor Profiles in the Adult Brain
Cited by: 35
Author(s): Brittney Lozzi, Teng-Wei Huang, Debosmita Sardar, Anna Yu-Szu Huang, Benjamin Deneen
Software Mentions: 9
Published: almost 5 years ago
10.3389/fmolb.2021.567327
Molecular and Clinical Characterization of LIGHT/TNFSF14 Expression at Transcriptional Level via 998 Samples With Brain Glioma
Cited by: 3
Author(s): Ying Yang, Wen Lv, Shi‐Hai Xu, Fei Shi, Aijun Shan, Jin Wang
Software Mentions: 9
Published: over 3 years ago
10.3390/v13061019
Human Retrotransposons and the Global Shutdown of Homeostatic Innate Immunity by Oncolytic Parvovirus H-1PV in Pancreatic Cancer
Cited by: 2
Author(s): Matthias Neulinger-Muñoz, Dominik Schaack, Svetlana Grekova, Andrea S. Bauer, Thomas Giese, Gabriel Alexander Salg, Elisa Espinet, Barbara Leuchs, Anette Heller, Jürg P. F. Nüesch, Miriam Schenk, Michael Volkmar, Nathalia A. Giese
Software Mentions: 8
Published: over 3 years ago
10.3390/ijms21114014
Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in Zebrafish
Cited by: 6
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Olivier Armant
Software Mentions: 8
Published: over 4 years ago
10.3390/v12090956
Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival
Cited by: 17
Author(s): Allison R. Kolbe, Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada, Keith A. Crandall
Software Mentions: 8
Published: over 4 years ago
10.1111/1755-0998.13187
A de novo chromosome‐level genome assembly of<i>Coregonus</i>sp. “<i>Balchen</i>”: One representative of the Swiss Alpine whitefish radiation
Cited by: 25
Author(s): Rishi De‐Kayne, Stefan Zoller, Philine G. D. Feulner
Software Mentions: 8
Published: over 4 years ago
10.3389/fcimb.2020.00194
Delineation and Modulation of the Natural Killer Cell Transcriptome in Rhesus Macaques During ZIKV and SIV Infections
Cited by: 2
Author(s): Malika Aïd, Daniel R. Ram, Steven E. Bosinger, Dan H. Barouch, R. Keith Reeves
Software Mentions: 8
Published: over 4 years ago
10.1186/s13059-019-1747-7
Cell type-specific epigenetic links to schizophrenia risk in the brain
Cited by: 65
Author(s): Isabel Mendizabal, Stefano Berto, Noriyoshi Usui, Kazuya Toriumi, Paramita Chatterjee, Connor Douglas, Iksoo Huh, Hyeonsoo Jeong, Thomas S. Layman, Carol A. Tamminga, Todd M. Preuss, Genevieve Konopka, Soojin V. Yi
Software Mentions: 8
Published: over 5 years ago
10.1186/s12864-021-07918-2
CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis
Cited by: 10
Author(s): Carlos Alberto Oliveira de Biagi, Ricardo Perecin Nociti, Danielle Barbosa Brotto, Breno Osvaldo Funicheli, Patrícia de Cássia Ruy, João Paulo Bianchi Ximenez, David Livingstone Alves Figueiredo, Wilson A. Silva
Software Mentions: 8
Published: over 3 years ago
10.3389/fimmu.2020.558757
Molecular and Clinical Characterization of PD-1 in Breast Cancer Using Large-Scale Transcriptome Data
Cited by: 16
Author(s): Qiang Liu, Ran Cheng, Xiangyi Kong, Zhongzhao Wang, Yi Fang, Jing Wang
Software Mentions: 8
Published: about 4 years ago
10.3389/fimmu.2021.711337
Single-Cell RNA Sequencing Identifies New Inflammation-Promoting Cell Subsets in Asian Patients With Chronic Periodontitis
Cited by: 17
Author(s): Shu‐Jiao Qian, Qing-Guo Huang, Ruiying Chen, Jia-Ji Mo, Liyun Zhou, Yi Zhao, Bin Li, Hong-Chang Lai
Software Mentions: 8
Published: over 3 years ago
10.3390/biom11050695
Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute Pancreatitis
Cited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: over 3 years ago
10.1080/15592294.2019.1603963
Identification of DNA methylation patterns predisposing for an efficient response to BCG vaccination in healthy BCG-naïve subjects
Cited by: 32
Author(s): Jyotirmoy Das, Deepti Verma, Mika Gustafsson, Maria Lerm
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pgen.1009386
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus
Cited by: 39
Author(s): Thorsten Langner, Adeline Harant, Luis B. Gómez-Luciano, Ram-Krishna Shrestha, Angus Malmgren, Sergio M. Latorre, Hernán A. Burbano, Joe Win, Sophien Kamoun
Software Mentions: 8
Published: almost 4 years ago
10.3389/fonc.2021.665360
DDX60 Is Associated With Glioma Malignancy and Serves as a Potential Immunotherapy Biomarker
Cited by: 7
Author(s): Jingwen Zhang, Minjie Fu, Mengli Zhang, Jinsen Zhang, Zunguo Du, Hongyi Zhang, Wei Hua, Ying Mao
Software Mentions: 8
Published: over 3 years ago
10.1016/j.heliyon.2019.e01558
Factor Analysis for Bicluster Acquisition (FABIA) revealed vincristine-sensitive transcript pattern of canine transmissible venereal tumors
Cited by: 5
Author(s): Kaj Chokeshaiusaha, Denis Puthier, Cong Tu Nguyen, Pansawut Sudjaidee, Thanida Sananmuang
Software Mentions: 8
Published: over 5 years ago
10.7717/peerj.8522
Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cells
Cited by: 8
Author(s): Phongsakorn Chuammitri, Soulasack Vannamahaxay, Benjaporn Sornpet, Kidsadagon Pringproa, Prapas Patchanee
Software Mentions: 8
Published: almost 5 years ago
10.1515/tnsci-2021-0004
Calumenin contributes to epithelial-mesenchymal transition and predicts poor survival in glioma
Cited by: 8
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Fei Shi, Aijun Shan
Software Mentions: 8
Published: almost 4 years ago
10.1186/s13073-020-00741-6
Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient
Cited by: 93
Author(s): Hye Won Lee, Wingyan Chung, Hae‐Ock Lee, Da Eun Jeong, Areum Jo, Ji Hyun Lim, Jeong Hee Hong, Do‐Hyun Nam, Byong Chang Jeong, Se Hoon Park, Kyeung Min Joo, Woong-Yang Park
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0245626
Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 4 years ago
10.1111/cns.13382
RGS16 promotes glioma progression and serves as a prognostic factor
Cited by: 20
Author(s): Ruoyu Huang, Guanzhang Li, Zheng Zhao, Fan Zeng, Kenan Zhang, Yanwei Liu, Kuanyu Wang, Huimin Hu
Software Mentions: 7
Published: over 4 years ago
10.1038/s41421-021-00312-y
A single-cell atlas of liver metastases of colorectal cancer reveals reprogramming of the tumor microenvironment in response to preoperative chemotherapy
Cited by: 42
Author(s): Li-Heng Che, Jingwen Li, Jian-Ping Huo, Rong Luo, Rui-Ming Xu, He Cai, Yuqing Li, Anni Zhou, Pinbo Huang, Yongyu Chen, Weijian Ni, Yunxia Zhou, Yuan-Yuan Liu, Huiyan Li, Rong Zhou, Ming Hui, Jianming Li
Software Mentions: 7
Published: over 3 years ago
10.1042/BSR20204340
TIGIT-related transcriptome profile and its association with tumor immune microenvironment in breast cancer
Cited by: 8
Author(s): Qin Zhang, Chaowei Gao, Jianqiang Shao, Zunyi Wang
Software Mentions: 7
Published: almost 4 years ago
10.1515/tnsci-2021-0002
<i>IKBIP</i> is a novel EMT-related biomarker and predicts poor survival in glioma
Cited by: 9
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Aijun Shan
Software Mentions: 7
Published: almost 4 years ago
10.1186/s12859-019-2990-3
Analysis of networks of host proteins in the early time points following HIV transduction
Cited by: 8
Author(s): Éva Csősz, Ferenc Tóth, Mohamed Mahdi, George Tsaprailis, Miklós Emri, József Tözsér
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-020-67221-0
Diversity hotspot and unique community structure of foraminifera in the world’s deepest marine blue hole – Sansha Yongle Blue Hole
Cited by: 13
Author(s): Qingxia Li, Yanli Lei, Raphaёl Morard, Tiegang Li, Baodong Wang
Software Mentions: 7
Published: over 4 years ago
10.3389/fonc.2020.573800
Molecular and Clinical Characterization of a Novel Prognostic and Immunologic Biomarker FAM111A in Diffuse Lower-Grade Glioma
Cited by: 8
Author(s): Xiaoshuai Ji, Feng Ding, Jiajia Gao, Xiaoming Huang, Wenqing Liu, Yunda Wang, Qian Liu, Tao Xin
Software Mentions: 7
Published: about 4 years ago
10.3389/fnins.2021.621121
Analysis of the Neuroproteome Associated With Cell Therapy After Intranigral Grafting in a Mouse Model of Parkinson Disease
Cited by: 1
Author(s): Hassan Dakik, Sarah Mantash, Ali Nehme, Firas Kobeissy, Masoud Zabet-Moghaddam, Parvin Mirzaei, Yehia Mechref, Afsaneh Gaillard, Laetitia Prestoz, Kazem Zibara
Software Mentions: 7
Published: almost 4 years ago
10.3390/plants10050998
Sources of Resistance to Common Bacterial Blight and Charcoal Rot Disease for the Production of Mesoamerican Common Beans in the Southern United States
Cited by: 5
Author(s): Daniel Ambachew, Jacqueline Joshua, Margaret T. Mmbaga, Matthew W. Blair
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-019-2610-2
BPG: Seamless, automated and interactive visualization of scientific data
Cited by: 55
Author(s): Christine P’ng, Jeffrey Green, Lauren C. Chong, Daryl Waggott, Stephenie D. Prokopec, Mehrdad Shamsi, Francis Nguyen, Davina Mak, Felix Lam, Marco A. Albuquerque, Yaoguo Wu, Esther Jung, Maud H.W. Starmans, Michelle Chan-Seng-Yue, Cindy Q. Yao, Bianca Liang, Emilie Lalonde, Syed Haider, Nicole A. Simone, Dorota H. Sendorek, Kenneth C. Chu, Nathalie C. Moon, Natalie S. Fox, Michal R. Grzadkowski, Nicholas J. Harding, Clement Fung, Amanda R. Murdoch, Kathleen E. Houlahan, Jianxin Wang, David R. Garcia, Richard de Borja, Ren Sun, Xihui Lin, Gregory M. Chen, Aileen Lu, Yu-Jia Shiah, Amin Zia, Ryan Kearns, Paul C. Boutros
Software Mentions: 7
Published: almost 6 years ago
10.3389/fmicb.2020.00765
Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes
Cited by: 10
Author(s): Paula Luize Camargos Fonseca, Fernanda Badotti, Ruth B De-Paula, Daniel S. Araújo, Dener Eduardo Bortolini, Luiz-Eduardo Del-Bem, Vasco Azevedo, Bertram Brenig, Eric Roberto Guimarães Rocha Aguiar, Aristóteles Goés-Neto
Software Mentions: 7
Published: over 4 years ago
10.1098/rstb.2019.0086
Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes
Cited by: 22
Author(s): David M. Needham, Camille Poirier, Elisabeth Hehenberger, Valeria Jiménez, Jarred Swalwell, Alyson E. Santoro, Alexandra Z. Worden
Software Mentions: 7
Published: about 5 years ago
10.3389/fcell.2021.688798
QSOX2 Is an E2F1 Target Gene and a Novel Serum Biomarker for Monitoring Tumor Growth and Predicting Survival in Advanced NSCLC
Cited by: 3
Author(s): Yaqi Li, Mei Liu, Zhuoxian Zhang, Libin Deng, Zhenyu Zhai, Hua Liu, Yiting Wang, Cheng Zhang, Jianping Xiong, Chao Shi
Software Mentions: 7
Published: over 3 years ago
10.3390/ijms21176283
Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella
Cited by: 22
Author(s): Fei‐Ying Yang, Hafiz Sohaib Ahmed Saqib, Junhui Chen, Qian‐Qian Ruan, Liette Vasseur, Weiyi He, Minsheng You
Software Mentions: 6
Published: over 4 years ago
10.1186/s12864-018-4738-2
Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells
Cited by: 43
Author(s): Fernando H. Biase, Katelyn M. Kimble
Software Mentions: 6
Published: over 6 years ago
10.1186/s40478-019-0681-y
A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: almost 6 years ago
10.3390/ijms22147322
Effect of the Electromagnetic Field (EMF) Radiation on Transcriptomic Profile of Pig Myometrium during the Peri-Implantation Period—An In Vitro Study
Cited by: 6
Author(s): Ewa Monika Drzewiecka, Wiktoria Kozlowska, Łukasz Paukszto, Agata Żmijewska, Pawel Jozef Wydorski, J Jastrzebski, Anita Franczak
Software Mentions: 6
Published: over 3 years ago
10.3390/microorganisms6030068
Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll
Cited by: 2
Author(s): Catherine Burke, Delaney Burnard, Adam Polkinghorne, Jonathan K. Webb, Wilhelmina M. Huston
Software Mentions: 6
Published: over 6 years ago
10.26508/lsa.201900520
Dynamic changes in the regulatory T-cell heterogeneity and function by murine IL-2 mutein
Cited by: 11
Author(s): Daniel Lu, Hao Wu, Ian Driver, Sarah Ingersoll, Sue J. Sohn, Songli Wang, Chi-Ming Li, Hyewon Phee
Software Mentions: 6
Published: over 4 years ago
10.1002/cam4.3251
Uridine phosphorylase 1 is a novel immune‐related target and predicts worse survival in brain glioma
Cited by: 16
Author(s): Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Shanshan Mei, Aijun Shan, Jiake Xu, Ying Yang
Software Mentions: 6
Published: over 4 years ago
10.1186/s13059-020-02160-7
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
Cited by: 33
Author(s): Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-021-90735-0
Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents
Cited by: 16
Author(s): Maryam Rezaei Somee, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi, Leila Ghanbari Maman, Kaveh Kavousi, Mohammad Ali Amoozegar, Maliheh Mehrshad
Software Mentions: 6
Published: over 3 years ago
10.3389/fpls.2021.619062
Genome-Wide Identification and Characterization of Potato Long Non-coding RNAs Associated With Phytophthora infestans Resistance
Cited by: 5
Author(s): Weilin Cao, Li‐Ming Gan, Chenchen Wang, Xuan Zhao, Mingyu Zhang, Jinyan Du, Shumei Zhou, Changxiang Zhu
Software Mentions: 6
Published: almost 4 years ago
10.7150/thno.54917
Single-cell transcriptome profiling reveals vascular endothelial cell heterogeneity in human skin
Cited by: 36
Author(s): Qingyang Li, Zhenlai Zhu, Lei Wang, Yi‐Ting Lin, Hui Fang, Jie Lei, Tianyu Cao, Gang Wang, Erle Dang
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pone.0230274
Dengue importation into Europe: A network connectivity-based approach
Cited by: 12
Author(s): Donald Salami, César Capinha, Maria do Rosário Oliveira Martins, Carla A. Sousa
Software Mentions: 6
Published: almost 5 years ago
10.1002/ece3.8048
Community species diversity mediates the trade‐off between aboveground and belowground biomass for grasses and forbs in degraded alpine meadow, Tibetan Plateau
Cited by: 2
Author(s): Tiancai Zhou, Jian Sun, Nan Zong, Guichen Hou, Peili Shi
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-019-56235-y
FABP4 and MMP9 levels identified as predictive factors for poor prognosis in patients with nonalcoholic fatty liver using data mining approaches and gene expression analysis
Cited by: 32
Author(s): Audrey Coilly, Christophe Desterke, Catherine Guettier, Didier Samuel, Franck Chiappini
Software Mentions: 6
Published: about 5 years ago
10.15252/emmm.202012881
Fragmentation patterns and personalized sequencing of cell‐free DNA in urine and plasma of glioma patients
Cited by: 47
Author(s): Florent Moulière, Christopher G. Smith, Katrin Heider, Jing Su, Ymke van der Pol, Mark Thompson, James A. Morris, Jonathan C. M. Wan, Dineika Chandrananda, James Hadfield, Marta Grzelak, Irena Hudecova, Dominique‐Laurent Couturier, Wendy N. Cooper, Hui Zhao, Davina Gale, Matthew Eldridge, Colin Watts, Kevin M. Brindle, Nitzan Rosenfeld, Richard Mair
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2021.638458
Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 5
Author(s): Li Hu, Zhibin Han, Xingbo Cheng, Sida Wang, Yumeng Feng, Zhiguo Lin
Software Mentions: 6
Published: almost 4 years ago
10.1155/2021/6680883
MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
Cited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: over 3 years ago
10.3390/plants9111446
The Genetic Diversity of Cranberry Crop Wild Relatives, Vaccinium macrocarpon Aiton and V. oxycoccos L., in the US, with Special Emphasis on National Forests
Cited by: 12
Author(s): Lorraine Rodríguez-Bonilla, Karen A. Williams, Fabian Rodríguez Bonilla, Daniel Matusinec, Andrew J. Maule, Kevin Coe, Eric Wiesman, Luis Díaz-Garcia, Juan Zalapa
Software Mentions: 6
Published: about 4 years ago
10.34133/2020/1925495
Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based Clusters
Cited by: 30
Author(s): Kevin G. Falk, Talukder Z. Jubery, Jamie A. O’Rourke, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
Software Mentions: 6
Published: almost 5 years ago
10.3389/fimmu.2018.01634
Robust B Cell Responses Predict Rapid Resolution of Lyme Disease
Cited by: 22
Author(s): Lisa K. Blum, Julia Z. Adamska, Dale S. Martin, Alison W. Rebman, Serra E. Elliott, Richard R.L. Cao, Monica E. Embers, Mark J. Soloski, William H. Robinson
Software Mentions: 6
Published: over 6 years ago
10.3390/genes12040549
Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: over 3 years ago