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Papers: 10.3390/ijms21114014

https://doi.org/10.3390/ijms21114014

Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in Zebrafish

Cited by: 6
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Olivier Armant
Published: about 6 years ago

Software Mentions 8

bioconductor: bsseq
Analyze, manage and store bisulfite sequencing data
Papers that mentioned: 38
Very Likely Science (100)
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: EnrichedHeatmap
Making Enriched Heatmaps
Papers that mentioned: 12
Very Likely Science (100)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
cran: circlize
Circular Visualization
Papers that mentioned: 260
Very Likely Science (100)
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
Very Likely Science (90)