Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms21114014

https://doi.org/10.3390/ijms21114014

Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in Zebrafish

Cited by: 6
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Olivier Armant
Published: over 4 years ago

Software Mentions 8

bioconductor: bsseq
Analyze, manage and store bisulfite sequencing data
Papers that mentioned: 38
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
Papers that mentioned: 7
bioconductor: EnrichedHeatmap
Making Enriched Heatmaps
Papers that mentioned: 12
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
cran: circlize
Circular Visualization
Papers that mentioned: 260
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566