Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: dmrseq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/dmrseq
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
1 version
Latest release: about 1 year ago
1 dependent package
14,031 downloads total
Papers Mentioning dmrseq 7
10.3390/ijms21114014
Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in ZebrafishCited by: 6
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Olivier Armant
Software Mentions: 8
Published: over 4 years ago
10.3389/fimmu.2021.651475
Novel Insights Into Rheumatoid Arthritis Through Characterization of Concordant Changes in DNA Methylation and Gene Expression in Synovial Biopsies of Patients With Differing Numbers of Swollen JointsCited by: 5
Author(s): Andrew Y. Li Yim, Enrico Ferrero, Klio Maratou, Huw D. Lewis, George C. Royal, David F. Tough, Chris Larminie, Marcel M.A.M. Mannens, Peter Henneman, Wouter J. de Jonge, Marleen G H van de Sande, Daniëlle M. Gerlag, Rab K. Prinjha, Paul P. Tak
Software Mentions: 7
Published: over 3 years ago
10.1186/s12864-021-07845-2
ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOwCited by: 4
Author(s): Stefan Milosavljevic, Tony Kuo, Samuele Decarli, Lucas Mohn, Jun Sese, Kentaro Shimizu, Rie Shimizu‐Inatsugi, Mark D. Robinson
Software Mentions: 4
Published: over 3 years ago
10.1186/s13059-019-1827-8
methylCC: technology-independent estimation of cell type composition using differentially methylated regionsCited by: 12
Author(s): Stephanie Hicks, Rafael A. Irizarry
Software Mentions: 4
Published: about 5 years ago
10.1186/s13073-020-00785-8
Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genesCited by: 44
Author(s): Charles E. Mordaunt, Julia M. Jianu, Benjamin I. Laufer, Yihui Zhu, Keith W. Dunaway, Kelly M. Bakulski, Jason I. Feinberg, Heather E. Volk, Kristen Lyall, Lisa Croen, Craig J. Newschaffer, Sally J Ozonoff, Irva Hertz‐Picciotto, M. Daniele Fallin, Rebecca J. Schmidt, Janine M. LaSalle
Software Mentions: 3
Published: about 4 years ago
10.1111/biom.13307
A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylationCited by: 3
Author(s): Kaiqiong Zhao, Karim Oualkacha, Lajmi Lakhal‐Chaieb, Aurélie Labbe, Kathleen Klein, Antonio Ciampi, Marie Hudson, Inés Colmegna, Tomi Pastinen, Tieyuan Zhang, Denise Daley, Celia Greenwood
Software Mentions: 3
Published: over 4 years ago
10.1186/s13148-021-01040-6
Genome-wide analysis of DNA methylation in Hirschsprung enteric precursor cells: unraveling the epigenetic landscape of enteric nervous system developmentCited by: 1
Author(s): Leticia Villalba‐Benito, Daniel López-López, Ana Torroglosa, Carlos S. Casimiro-Soriguer, Berta Lasa, Raquel M. Fernández, María José Moya-Jiménez, Guillermo Antiñolo, Joaquín Dopazo, Salud Borrego
Software Mentions: 2
Published: almost 4 years ago