Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: EnrichedHeatmap
https://packages.ecosyste.ms/registries/bioconductor.org/packages/EnrichedHeatmap
Making Enriched Heatmaps
1 version
Latest release: about 1 year ago
5 dependent packages
32,087 downloads total
Papers Mentioning EnrichedHeatmap 12
10.1016/j.cell.2019.12.013
Identification of a Master Regulator of Differentiation in ToxoplasmaCited by: 154
Author(s): Benjamin S. Waldman, Dominic Schwarz, Marc H. Wadsworth, Jeroen P. J. Saeij, Alex K. Shalek, Sebastian Lourido
Software Mentions: 17
Published: almost 5 years ago
10.1186/s13059-021-02335-w
Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traitsCited by: 15
Author(s): Lindsay F. Rizzardi, Peter Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M. Callahan, K Stephens, Sean D. Taverna, Hao Zhang, Sinan Ramazanoglu, Kasper D. Hansen, Andrew P. Feinberg
Software Mentions: 16
Published: over 3 years ago
10.3390/cells8111321
Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis: A Systematic Study Using Public Gene Expression and Transcription Factor Binding DatasetsCited by: 16
Author(s): Mahmoud Ahmed, Trang Huyen Lai, Jin Seok Hwang, Sahib Zada, Trang Minh Pham, Deok Ryong Kim
Software Mentions: 15
Published: about 5 years ago
10.1080/21623945.2019.1697563
Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytesCited by: 6
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 11
Published: almost 6 years ago
10.3390/ijms21114014
Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in ZebrafishCited by: 6
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Olivier Armant
Software Mentions: 8
Published: over 4 years ago
10.1186/s13059-020-02156-3
STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cellsCited by: 42
Author(s): Tianran Peng, Yanan Zhai, Yaser Atlasi, Menno ter Huurne, Hendrik Marks, Hendrik G. Stunnenberg, Wout Megchelenbrink
Software Mentions: 7
Published: over 4 years ago
10.1038/s41388-021-01876-5
The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct and separable from its DNA-binding function in Ewing sarcomaCited by: 12
Author(s): Megann A. Boone, Cenny Taslim, Julie Crow, Julia Selich‐Anderson, Andrea K. Byrum, Iftekhar A. Showpnil, Benjamin D. Sunkel, Meng Wang, Benjamin Z. Stanton, Emily R. Theisen, Stephen L. Lessnick
Software Mentions: 7
Published: over 3 years ago
10.1111/cgf.13727
Tasks, Techniques, and Tools for Genomic Data VisualizationCited by: 48
Author(s): Sabrina Nusrat, Theresa Harbig, Nils Gehlenborg
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-020-64700-2
Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro differentiation of a putative hepatocyte progenitorCited by: 16
Author(s): Jesús Rafael Rodríguez‐Aguilera, Szilvia Ecsedi, Chloe D. Goldsmith, Marie-Pierre Cros, Mariana Domínguez‐López, Nuria Guerrero‐Celis, Rebeca Pérez‐Cabeza de Vaca, Isabelle Chemin, Félix Recillas‐Targa, Victoria Chagoya de Sánchez, Héctor Hernández-Vargas
Software Mentions: 5
Published: over 4 years ago
10.7554/eLife.58533
A new role for histone demethylases in the maintenance of plant genome integrityCited by: 28
Author(s): Javier Antunez-Sanchez, Matthew Naish, Juan S. Ramirez-Prado, Sho Ohno, Ying Huang, Alexander Dawson, Korawit Opassathian, Deborah Manza‐Mianza, Federico Ariel, Cécile Raynaud, Anjar Tri Wibowo, Josquin Daron, Minako Ueda, David Latrasse, R. Keith Slotkin, Detlef Weigel, Moussa Benhamed, José Gutierrez-Marcos
Software Mentions: 5
Published: about 4 years ago
10.7554/eLife.36435
Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promotersCited by: 8
Author(s): Ryo Nabeshima, Osamu Nishimura, Takako Maeda, Nobujiro Shimizu, Takahiro Ide, Kenta Yashiro, Yasuo Sakai, Chikara Meno, Mitsutaka Kadota, Hidetaka Shiratori, Shigehiro Kuraku, Hiroshi Hamada
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-018-4625-x
EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associationsCited by: 128
Author(s): Zuguang Gu, Roland Eils, Matthias Schlesner, Naveed Ishaque
Software Mentions: 2
Published: over 6 years ago