Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2019.12.013

https://doi.org/10.1016/j.cell.2019.12.013

Cited by: 154
Author(s): Benjamin S. Waldman, Dominic Schwarz, Marc H. Wadsworth, Jeroen P. J. Saeij, Alex K. Shalek, Sebastian Lourido
Published: over 4 years ago

Software Mentions 17

bioconductor: ChIPQC

Quality metrics for ChIPseq data
Papers that mentioned: 15

bioconductor: ComplexHeatmap

Make Complex Heatmaps
Papers that mentioned: 565

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: EnrichedHeatmap

Making Enriched Heatmaps
Papers that mentioned: 12

bioconductor: GenomicRanges

Representation and manipulation of genomic intervals
Papers that mentioned: 323

cran: ape

Analyses of Phylogenetics and Evolution
Papers that mentioned: 918

cran: data.table

Extension of 'data.frame'
Papers that mentioned: 33

cran: DescTools

Tools for Descriptive Statistics
Papers that mentioned: 152

cran: dplyr

A Grammar of Data Manipulation
Papers that mentioned: 1,213

cran: plyr

Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: tidyr

Tidy Messy Data
Papers that mentioned: 321

cran: tidyverse

Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023

pypi: ape

A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203

pypi: plyr

UNKNOWN
Papers that mentioned: 468