Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: ChIPQC
https://packages.ecosyste.ms/registries/bioconductor.org/packages/ChIPQC
Quality metrics for ChIPseq data
1 version
Latest release: about 1 year ago
54,101 downloads total
Papers Mentioning ChIPQC 15
10.1016/j.cell.2019.12.013
Identification of a Master Regulator of Differentiation in ToxoplasmaCited by: 154
Author(s): Benjamin S. Waldman, Dominic Schwarz, Marc H. Wadsworth, Jeroen P. J. Saeij, Alex K. Shalek, Sebastian Lourido
Software Mentions: 17
Published: almost 5 years ago
10.15252/emmm.201911900
Epigenetic gene expression links heart failure to memory impairmentCited by: 13
Author(s): Rezaul Islam, Dawid Lbik, M. Sadman Sakib, Raoul Maximilian Hofmann, Tea Berulava, Martí Jiménez Mausbach, Julia Cha, Maria Amélia Azevêdo Goldberg, Elerdashvili Vakhtang, Christian Schiffmann, Anke Zieseniß, Dörthe M. Katschinski, Farahnaz Sananbenesi, Karl Toischer, André Fischer
Software Mentions: 11
Published: almost 4 years ago
10.1186/s12859-017-1770-1
CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element predictionCited by: 24
Author(s): Carlos Guzmán, Iván D’Orso
Software Mentions: 10
Published: over 7 years ago
10.3389/fgene.2020.00817
Changes in H3K27ac at Gene Regulatory Regions in Porcine Alveolar Macrophages Following LPS or PolyIC ExposureCited by: 17
Author(s): Júber Herrera-Uribe, Haibo Li, Kristen A Byrne, Zahra F Bond, Crystal L. Loving, Christopher K. Tuggle
Software Mentions: 9
Published: over 4 years ago
10.1186/s12859-016-1274-4
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipelineCited by: 95
Author(s): Qian Qin, Shenglin Mei, Qiu Liang Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Xu Han, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry W. Long, X. Shirley Liu
Software Mentions: 7
Published: about 8 years ago
10.1128/mBio.01007-20
The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog <i>ftsZ2</i> To Control Cell Division in ArchaeaCited by: 15
Author(s): Cynthia L. Darnell, Jenny Z. Zheng, Sean Wilson, R Bertoli, Alexandre W. Bisson‐Filho, Edward B. Garner, Amy K. Schmid
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-019-57214-z
5-hydroxymethylcytosine and gene activity in mouse intestinal differentiationCited by: 14
Author(s): Santiago Uribe-Lewis, Thomas Carroll, Suraj Menon, Anna M. Nicholson, Piotr J. Manasterski, Douglas J. Winton, Simon Buczacki, Adele Murrell
Software Mentions: 6
Published: almost 5 years ago
10.7150/thno.47390
Upregulation of amplified in breast cancer 1 contributes to pancreatic ductal adenocarcinoma progression and vulnerability to blockage of hedgehog activationCited by: 2
Author(s): Licen Li, Jiaolin Bao, Haitao Wang, Josh Haipeng Lei, Cheng Peng, Jianming Zeng, Hao Wu, Xu Zhang, Xiaoling Xu, Chundong Yu, Chu Xia Deng, Qiang Chen
Software Mentions: 6
Published: almost 4 years ago
10.3390/nu9040407
Prenatal Exposure to a Maternal High-Fat Diet Affects Histone Modification of Cardiometabolic Genes in Newborn RatsCited by: 24
Author(s): Bijaya Upadhyaya, Tricia D. Larsen, Shivon Barwari, Eli J. Louwagie, Michelle Baack, Moul Dey
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0130379
A FOXM1 Dependent Mesenchymal-Epithelial Transition in Retinal Pigment Epithelium CellsCited by: 13
Author(s): Parul Choudhary, Benjamin T Dodsworth, Ben S. Sidders, Alex Gutteridge, Christos Michaelides, Joshua K. Duckworth, Paul J. Whiting, Caroline Benn
Software Mentions: 4
Published: over 9 years ago
10.1186/s13100-021-00235-1
Genomic properties of variably methylated retrotransposons in mouseCited by: 13
Author(s): Jessica L. Elmer, Amir D. Hay, Noah J. Kessler, Tessa M. Bertozzi, Eve Ainscough, Anne C. Ferguson-Smith
Software Mentions: 4
Published: almost 4 years ago
10.7554/eLife.34864
Gene-specific mechanisms direct glucocorticoid-receptor-driven repression of inflammatory response genes in macrophagesCited by: 51
Author(s): Maria A. Sacta, Bowranigan Tharmalingam, Maddalena Coppo, David A. Rollins, Dinesh K Deochand, Bradley Benjamin, Li Yu, Bin Zhang, Xiaoyu Hu, Rong Li, Yurii Chinenov, Inez Rogatsky
Software Mentions: 4
Published: almost 7 years ago
10.1186/s13148-016-0265-7
Neonatal monocytes exhibit a unique histone modification landscapeCited by: 37
Author(s): Jennifer Bermick, Nathalie Lambrecht, Aaron D. denDekker, Steven L. Kunkel, Nicholas W. Lukacs, Cory M. Hogaboam, Matthew Schaller
Software Mentions: 3
Published: about 8 years ago
10.7554/eLife.22767
A high-resolution map of transcriptional repressionCited by: 43
Author(s): Ziwei Liang, Karen E. Brown, Thomas Carroll, Benjamin Taylor, Isabel Ferreirós-Vidal, Brian Hendrich, David Rueda, Amanda G. Fisher, Matthias Merkenschlager
Software Mentions: 2
Published: over 7 years ago
10.3389/fimmu.2021.682094
H3K4me3 Histone ChIP-Seq Analysis Reveals Molecular Mechanisms Responsible for Neutrophil Dysfunction in HIV-Infected IndividualsCited by: 3
Author(s): Paweł Piątek, Maciej Tarkowski, Magdalena Namiecińska, Agostino Riva, Marek Wieczorek, Sylwia Michlewska, Justyna Dulska, Małgorzata Domowicz, Małgorzata Majka Kulińska Michalska, Natalia Lewkowicz, Przemysław Lewkowicz
Software Mentions: 2
Published: over 3 years ago