Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/emmm.201911900

https://doi.org/10.15252/emmm.201911900

Cited by: 13
Author(s): Rezaul Islam, Dawid Lbik, M. Sadman Sakib, Raoul Maximilian Hofmann, Tea Berulava, Martí Jiménez Mausbach, Julia Cha, Maria Amélia Azevêdo Goldberg, Elerdashvili Vakhtang, Christian Schiffmann, Anke Zieseniß, Dörthe M. Katschinski, Farahnaz Sananbenesi, Karl Toischer, André Fischer
Published: over 3 years ago

Software Mentions 11

bioconductor: ChIPQC
Quality metrics for ChIPseq data
Papers that mentioned: 15
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
bioconductor: GeneOverlap
Test and visualize gene overlaps
Papers that mentioned: 40
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: miRBaseConverter
A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Papers that mentioned: 10
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668