Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7150/thno.47390

https://doi.org/10.7150/thno.47390

Upregulation of amplified in breast cancer 1 contributes to pancreatic ductal adenocarcinoma progression and vulnerability to blockage of hedgehog activation

Cited by: 2
Author(s): Licen Li, Jiaolin Bao, Haitao Wang, Josh Haipeng Lei, Cheng Peng, Jianming Zeng, Hao Wu, Xu Zhang, Xiaoling Xu, Chundong Yu, Chu Xia Deng, Qiang Chen
Published: almost 4 years ago

Software Mentions 6

bioconductor: ChIPQC
Quality metrics for ChIPseq data
Papers that mentioned: 15
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: RTCA
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Papers that mentioned: 516
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207