Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02335-w

https://doi.org/10.1186/s13059-021-02335-w

Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits

Cited by: 15
Author(s): Lindsay F. Rizzardi, Peter Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M. Callahan, K Stephens, Sean D. Taverna, Hao Zhang, Sinan Ramazanoglu, Kasper D. Hansen, Andrew P. Feinberg
Published: over 3 years ago

Software Mentions 16

bioconductor: AnnotationHub
Client to access AnnotationHub resources
Papers that mentioned: 39
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: bsseq
Analyze, manage and store bisulfite sequencing data
Papers that mentioned: 38
bioconductor: EnrichedHeatmap
Making Enriched Heatmaps
Papers that mentioned: 12
bioconductor: EpiDISH
Epigenetic Dissection of Intra-Sample-Heterogeneity
Papers that mentioned: 29
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: rGREAT
GREAT Analysis - Functional Enrichment on Genomic Regions
Papers that mentioned: 5
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105