Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1080/21623945.2019.1697563

https://doi.org/10.1080/21623945.2019.1697563

Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes

Cited by: 6
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Published: almost 6 years ago

Software Mentions 11

bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: EnrichedHeatmap
Making Enriched Heatmaps
Papers that mentioned: 12
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: xtable
Export Tables to LaTeX or HTML
Papers that mentioned: 32
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: xtable
operate table format in console. console table, csv, json, yaml and markdown.
Papers that mentioned: 32