Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-021-96712-x

https://doi.org/10.1038/s41598-021-96712-x

Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)

Cited by: 12
Author(s): César A. Medina, Deborah A. Samac, Long‐Xi Yu
Published: over 3 years ago

Software Mentions 11

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367

cran: circlize

Circular Visualization
Papers that mentioned: 260

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: CIRCexplorer2

Circular RNA analysis toolkits
Papers that mentioned: 79

pypi: package

package is a package to package your package
Papers that mentioned: 1,300

pypi: plncpro

PlncPRO (Plant Long Non-Coding rna Prediction by Random fOrests) is a program to classify coding (mRNAs) and long non-coding transcripts (lncRNAs).
Papers that mentioned: 1