An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1038/s41598-021-96712-x

https://doi.org/10.1038/s41598-021-96712-x

Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)

Cited by: 12
Author(s): César A. Medina, Deborah A. Samac, Long‐Xi Yu
Published: almost 4 years ago

Software Mentions 11

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
Very Likely Science (100)
cran: circlize
Circular Visualization
Papers that mentioned: 260
Very Likely Science (100)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
Very Likely Science (85)
pypi: CIRCexplorer2
Circular RNA analysis toolkits
Papers that mentioned: 79
Very Likely Science (100)
pypi: package
package is a package to package your package
Papers that mentioned: 1,300
Very Likely Science (65)
pypi: plncpro
PlncPRO (Plant Long Non-Coding rna Prediction by Random fOrests) is a program to classify coding (mRNAs) and long non-coding transcripts (lncRNAs).
Papers that mentioned: 1
Very Likely Science (91)