pypi: CIRCexplorer2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-96712-x

Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)
Cited by: 12
Author(s): César A. Medina, Deborah A. Samac, Long‐Xi Yu
Software Mentions: 11
Published: about 3 years ago

10.3389/fgene.2020.564301

Identification of Specific Circular RNA Expression Patterns and MicroRNA Interaction Networks in Mesial Temporal Lobe Epilepsy
Cited by: 10
Author(s): Lachlan G. Gray, James D. Mills, Ashton Curry‐Hyde, Sasha Devore, Daniel Friedman, Maria Thom, Catherine Scott, Roland D. Thijs, Eleonora Aronica, Orrin Devinsky, Michael Janitz
Software Mentions: 9
Published: almost 4 years ago

10.3390/ijms21010293

Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data
Cited by: 8
Author(s): Giulio Ferrero, Nicola Licheri, Lucia Coscujuela Tarrero, Carlo De Intinis, Valentina Miano, Raffaele Calogero, Francesca Cordero, Michele De Bortoli, Marco Beccuti
Software Mentions: 8
Published: over 4 years ago

10.3389/fnmol.2018.00225

NFIX Circular RNA Promotes Glioma Progression by Regulating miR-34a-5p via Notch Signaling Pathway
Cited by: 86
Author(s): Haidong Xu, Yu Zhang, Qi Ling, Lijuan Ding, Hong Jiang, Haojun Yu
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-019-50864-z

Circular RNA differential expression in blood cell populations and exploration of circRNA deregulation in pediatric acute lymphoblastic leukemia
Cited by: 62
Author(s): Enrico Gaffo, Elena Boldrin, Anna Dal Molin, Silvia Bresolin, Annagiulia Bonizzato, Luca Trentin, Chiara Frasson, Klaus‐Michael Debatin, Lueder Hinrich Meyer, Geertruy te Kronnie, Stefania Bortoluzzi
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.665153

Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species
Cited by: 9
Author(s): Annie Robic, Chloé Cerutti, Christa Kühn, Thomas Faraut
Software Mentions: 6
Published: over 3 years ago

10.1186/s13073-021-00951-6

Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus
Cited by: 10
Author(s): Nandan P. Deshpande, Stephen M. Riordan, Claire J. Gorman, Shaun Nielsen, Tonia Russell, Carolina Correa-Ospina, Samitha Fernando, Shafagh A. Waters, Natalia Castaño‐Rodríguez, Si Ming Man, Nicodemus Tedla, Marc R. Wilkins, Nadeem O. Kaakoush
Software Mentions: 6
Published: about 3 years ago

10.1186/s13059-021-02300-7

riboCIRC: a comprehensive database of translatable circRNAs
Cited by: 39
Author(s): Huihui Li, Mingzhe Xie, Yan Wang, Ludong Yang, Zhi Xie
Software Mentions: 6
Published: over 3 years ago

10.1155/2017/6218353

Circular RNAs: Biogenesis, Function, and a Role as Possible Cancer Biomarkers
Cited by: 105
Author(s): Luka Bolha, Metka Ravnik‐Glavač, Damjan Glavač
Software Mentions: 5
Published: over 7 years ago

10.3390/ijms221910297

Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development
Cited by: 10
Author(s): Saeid Babaei, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 5
Published: almost 3 years ago

10.1186/s13059-018-1403-7

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues
Cited by: 37
Author(s): Serghei Mangul, Harry Taegyun Yang, Nicolas Strauli, Franziska Gruhl, Hagit T. Porath, Kevin Hsieh, Linus Chen, Timothy Daley, S. Christenson, Agata Wesolowska-Andersen, Roberto Spreafico, Cydney Rios, Celeste Eng, Andrew D. Smith, Ryan D. Hernández, Roel A. Ophoff, Jose Rodriguez Santana, Erez Y. Levanon, Prescott G. Woodruff, Esteban G. Burchard, Max A. Seibold, Sagiv Shifman, Eleazar Eskin, Noah Zaitlen
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-021-02263-9

Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs
Cited by: 62
Author(s): Yang Zhang, Tuan M. Nguyen, Xiao‐Ou Zhang, Limei Wang, Tin Phan, John G. Clohessy, Pier Paolo Pandolfi
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21124302

Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene
Cited by: 11
Author(s): Debojyoti Das, Aniruddha Das, Mousumi Sahu, Smruti Sambhav Mishra, Shaheerah Khan, Pruthvi Raj Bejugam, Pranita K Rout, Arundhoti Das, Shehnaz Bano, Gyan P. Mishra, Sunil K. Raghav, Anshuman Dixit, Amaresh C. Panda
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2019.01347

Emerging Roles of Heat-Induced circRNAs Related to Lactogenesis in Lactating Sows
Cited by: 11
Author(s): Jiajie Sun, Haojie Zhang, Bao-Yu Hu, Yueqin Xie, Dongyang Wang, Jinzhi Zhang, Ting Chen, Junyi Luo, Songbo Wang, Qinyan Jiang, Qianyun Xi, Zujing Chen, Yongliang Zhang
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2018.00020

Improved circRNA Identification by Combining Prediction Algorithms
Cited by: 123
Author(s): Thomas B. Hansen
Software Mentions: 4
Published: over 6 years ago

10.1093/database/baz053

CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress
Cited by: 26
Author(s): Kai Wang, Chong Wang, Baohuan Guo, Kun Song, Chuanhong Shi, Xin Jiang, Keyi Wang, Yacong Tan, Lequn Wang, Lin Wang, Jiangjiao Li, Ying Liu, Yu-Dong Cai, Hongwei Zhao, Xiaoyong Sun
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.101565

Identification and characterization of human ovary-derived circular RNAs and their potential roles in ovarian aging
Cited by: 38
Author(s): Hong-Cai Cai, Yamin Li, Huimin Li, Jean Damascene Niringiyumukiza, Mengdi Zhang, Li Chen, Gang Chen, Wenpei Xiang
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes12081258

Systematic Identification of circRNAs in Alzheimer’s Disease
Cited by: 9
Author(s): Kyle R. Cochran, Kirtana Veeraraghavan, Gautam Kundu, Krystyna Mazan-Mamczarz, Christopher Coletta, Madhav Thambisetty, Myriam Gorospe, Supriyo De
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-019-53892-x

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
Cited by: 46
Author(s): Celine Everaert, Hetty Helsmoortel, Anneleen Decock, Eva Hulstaert, Ruben Van Paemel, Kimberly Verniers, Justine Nuytens, Jasper Anckaert, Nele Nijs, Joeri Tulkens, Bert Dhondt, An Hendrix, Pieter Mestdagh, Jo Vandesompele
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-020-02018-y

CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes
Cited by: 217
Author(s): Wanying Wu, Peifeng Ji, Fangqing Zhao
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2021.636419

Five Circular RNAs in Metabolism Pathways Related to Prostate Cancer
Cited by: 6
Author(s): Lili Zhang, Wei Zhang, Hexin Li, Xiaokun Tang, Siyuan Xu, Meng Wu, Li Wan, Fei Su, Yaqun Zhang
Software Mentions: 4
Published: over 3 years ago

10.3390/ani9070403

Characterization of Circular RNAs in Chinese Buffalo (Bubalus bubalis) Adipose Tissue: A Focus on Circular RNAs Involved in Fat Deposition
Cited by: 23
Author(s): Jieping Huang, Zhao Jian-Gao, Qiuzhi Zheng, Shuzhe Wang, Xuefeng Wei, Fen Li, Jin Shang, Chuzhao Lei, Yun Ma
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-15061-w

The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
Cited by: 28
Author(s): Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos, Tatiana Vinasco-Sandoval, Leandro Magalhães, Pablo Pinto, Ana Karyssa Mendes Anaissi, Sâmia Demachki, Paulo Pimentel de Assumpção, Sidney Emanuel Batista dos Santos
Software Mentions: 3
Published: almost 7 years ago

10.26508/lsa.201900398

Noncoding AUG circRNAs constitute an abundant and conserved subclass of circles
Cited by: 59
Author(s): Lotte Vw Stagsted, Katrine Mandrup Nielsen, Iben Daugaard, Thomas B. Hansen
Software Mentions: 3
Published: over 5 years ago

10.3390/cells9112488

SRRM4 Expands the Repertoire of Circular RNAs by Regulating Microexon Inclusion
Cited by: 6
Author(s): Vanessa M. Conn, Marta Gabryelska, Shashikanth Marri, Brett W. Stringer, Rebecca J. Ormsby, Timothy Penn, Santosh Poonnoose, Ganessan Kichenadasse, Simon J. Conn
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13020-019-0225-1

Baduanjin exerts anti-diabetic and anti-depression effects by regulating the expression of mRNA, lncRNA, and circRNA
Cited by: 37
Author(s): Tian An, Zhong-Chen He, Xinqing Zhang, Jun Li, Ailing Chen, Fang Tan, Hongdong Chen, Bohan Lv, Juan Lian, Gao S, Guiyan Jiang
Software Mentions: 3
Published: over 5 years ago

10.1155/2019/9107806

Circ_MDM2_000139, Circ_ATF2_001418, Circ_CDC25C_002079, and Circ_BIRC6_001271 Are Involved in the Functions of XAV939 in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Haixiang Yu, Liping Xu, Zhengjia Liu, Bo Guo, Zhifeng Han, Xin Hua
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2020.00601

Circular RNA Expression Profiles in Nasopharyngeal Carcinoma by Sequence Analysis
Cited by: 17
Author(s): Jing Yang, Yongqian Gong, Qingshan Jiang, Lijun Liu, Shuyan Li, Quanjun Zhou, Fang Huang, Zhifeng Liu
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2021.670542

Characterizing Expression and Regulation of Gamma-Herpesviral Circular RNAs
Cited by: 13
Author(s): Takanobu Tagawa, Daniel K. Oh, Jerico R. Santos, Sarah E Dremel, Guruswamy Mahesh, Thomas S. Uldrick, Robert Yarchoan, Vishal N. Kopardé, Joseph M. Ziegelbauer
Software Mentions: 3
Published: about 3 years ago

10.3389/fgene.2020.00652

Exploration of Long Non-coding RNAs and Circular RNAs in Porcine Milk Exosomes
Cited by: 25
Author(s): Bin Zeng, Ting Chen, Junyi Luo, Mei-Ying Xie, Limin Wei, Qianyun Xi, Jiajie Sun, Yongliang Zhang
Software Mentions: 3
Published: about 4 years ago

10.1186/s12284-021-00455-2

Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development
Cited by: 21
Author(s): Run Zhou, Pablo Sanz-Jimenez, Xitong Zhu, Jia-Wu Feng, Lin Shen, Jia‐Ming Song, Lingling Chen
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-47077-9

Relationships of Non-coding RNA with diabetes and depression
Cited by: 22
Author(s): Tian An, Jing Zhang, Yue Ma, Juan Lian, Yanxiang Wu, Bohan Lv, Meng-Hua Ma, Meng Ji, Yuntao Zhou, Zhiyong Zhang, Qing Liu, Gao S, Guiyan Jiang
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.58478

circZNF827 nucleates a transcription inhibitory complex to balance neuronal differentiation
Cited by: 26
Author(s): Anne Kruse Hollensen, Henriette Sylvain Thomsen, Marta Lloret-Llinares, Andreas Bjerregaard Kamstrup, James C. Jensen, Majbritt Luckmann, Nanna Birkmose, Johan Palmfeldt, Torben Heick Jensen, Thomas B. Hansen, Christian Kroun Damgaard
Software Mentions: 3
Published: almost 4 years ago

10.3389/fphys.2019.00433

Increasing Upstream Chromatin Long–Range Interactions May Favor Induction of Circular RNAs in LysoPC-Activated Human Aortic Endothelial Cells
Cited by: 16
Author(s): Angus Li, Yu Sun, Charles Drummer, Yifan Lu, Daohai Yu, Yan Zhou, Xinyuan Li, Simone J. Pearson, Candice Johnson, Catherine C. Yu, William Y. Yang, Kevin Mastascusa, Xiaohua Jiang, Jianxin Sun, Thomas J. Rogers, Wenhui Hu, Hong Wang, Xiaofeng Yang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12863-017-0569-4

Identification and integrated analysis of differentially expressed lncRNAs and circRNAs reveal the potential ceRNA networks during PDLSC osteogenic differentiation
Cited by: 124
Author(s): Xiuge Gu, Mengying Li, Yongfeng Jin, Dongxu Liu, Fulan Wei
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.101541

Comprehensive analysis of circRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of atherosclerosis in rabbits
Cited by: 129
Author(s): Feng Zhang, Ruyou Zhang, Xiaoyu Zhang, Yingnan Wu, Xiaoying Li, Shuang Zhang, Wen-ying Hou, Yu Ding, Jiawei Tian, Lei Sun, Xiangdong Kong
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22105182

Canonical and Interior Circular RNAs Function as Competing Endogenous RNAs in Psoriatic Skin
Cited by: 8
Author(s): Xiaoxin Liu, Jacqueline Frost, Anne M. Bowcock, Weixiong Zhang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-07910-w

Reverse complementary matches simultaneously promote both back-splicing and exon-skipping
Cited by: 7
Author(s): Dong Cao
Software Mentions: 3
Published: about 3 years ago

10.7717/peerj.10032

The mechanism and detection of alternative splicing events in circular RNAs
Cited by: 13
Author(s): Xiaohan Li, Bing Zhang, Fuyu Li, Kequan Yu, Ya Mei Bai
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-019-3160-3

Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads
Cited by: 57
Author(s): Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-020-03944-1

PCirc: random forest-based plant circRNA identification software
Cited by: 13
Author(s): Shuwei Yin, Xiao Tian, Jingjing Zhang, Peisen Sun, Guanglin Li
Software Mentions: 2
Published: over 3 years ago

10.1093/bioinformatics/btab288

JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sites
Cited by: 9
Author(s): Jyun-Yu Jiang, Chelsea J.‐T. Ju, Junheng Hao, Muhao Chen, Wei Wang
Software Mentions: 2
Published: about 3 years ago

10.1042/BSR20181514

Differential expression and bioinformatics analysis of circRNA in osteosarcoma
Cited by: 36
Author(s): Yizhe Xi, Mitra Fowdur, Yun Liu, Hao Wu, Miao He, Jinmin Zhao
Software Mentions: 2
Published: over 5 years ago

10.1186/s12943-019-1121-0

Functions and clinical significance of circular RNAs in glioma
Cited by: 117
Author(s): Jikui Sun, Banban Li, Chang Shu, Quanfeng Ma, Jinhuan Wang
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.6949

Comprehensive transcriptional profiling of aging porcine liver
Cited by: 6
Author(s): Jianning Chen, Qin Zou, Daojun Lv, Muhammad Ali Raza, Xue Wang, Chen Yan, Xiaoyu Xi, Peilin Li, Anxiang Wen, Li Zhu, Guoqing Tang, Mingzhou Li, Xuewei Li, Yanzhi Jiang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008338

seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data
Cited by: 11
Author(s): Mohamed Chaabane, Kalina Andreeva, Jin-Hee Hwang, Tae Lim Kook, Juw Won Park, Nigel G. F. Cooper
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers12102975

circ2GO: A Database Linking Circular RNAs to Gene Function
Cited by: 11
Author(s): Yanhong Lyu, Maïwen Caudron-Herger, Sven Diederichs
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41419-021-03558-2

N6-methyladenosine modification of circCUX1 confers radioresistance of hypopharyngeal squamous cell carcinoma through caspase1 pathway
Cited by: 61
Author(s): Ping Wu, Xing Fang, Yalan Liu, Yurong Tang, Wei Wang, Xin Li, Yuhua Fan
Software Mentions: 2
Published: over 3 years ago

10.1186/s11658-021-00270-z

Circular RNA expression profile in transgenic diabetic mouse kidneys
Cited by: 4
Author(s): Xuan Xiong, Changchun Liu, Meiren Shen, Qian Yang, Qiang Zhao, Xiaoyan Li, Xiaoshi Zhong, Zhiwei Wang
Software Mentions: 2
Published: over 3 years ago

10.1093/database/baaa039

GreenCircRNA: a database for plant circRNAs that act as miRNA decoys
Cited by: 23
Author(s): Jingjing Zhang, Zhiqiang Hao, Shuwei Yin, Guanglin Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.617281

Insights Into the Role of CircRNAs: Biogenesis, Characterization, Functional, and Clinical Impact in Human Malignancies
Cited by: 45
Author(s): Sabah Nisar, Ajaz A. Bhat, Mayank Singh, Thasni Karedath, Arshi Rizwan, Sheema Hashem, Puneet Bagga, Ravinder Reddy, Farrukh Jamal, Shahab Uddin, Gyan Chand, Davide Bedognetti, Wael El-Rifai, Michael Frenneaux, Muzafar A. Macha, Ikhlak Ahmed, Mohammad Haris
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.00135

Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs
Cited by: 6
Author(s): Zitao Chen, Xiangchun Pan, Yaru Kong, Yao Jiang, Yuyi Zhong, Hao Zhang, Zhe Zhang, Xiaolong Yuan, Jiaqi Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fvets.2021.693641

Extrachromosomal Circular DNA: Category, Biogenesis, Recognition, and Functions
Cited by: 13
Author(s): Xiukai Cao, Shan Wang, Ling Ge, Weibo Zhang, Jinlin Huang, Wei Sun
Software Mentions: 2
Published: about 3 years ago

10.1534/g3.120.401331

Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (<i>Lactuca sativa</i>)
Cited by: 5
Author(s): Zhenchao Yang, Yang Zhao, Yuanyuan Xie, Qi Liu, Yanhao Mei, Yongjun Wu
Software Mentions: 2
Published: about 4 years ago

10.1186/s13073-019-0614-1

Reconstruction of full-length circular RNAs enables isoform-level quantification
Cited by: 106
Author(s): Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao
Software Mentions: 2
Published: over 5 years ago

10.1016/j.gpb.2018.08.001

CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison
Cited by: 183
Author(s): Rui Dong, Xu-Kai Ma, Guo-Wei Li, Li Yang
Software Mentions: 2
Published: about 6 years ago

10.1016/j.gpb.2019.03.004

CircAST: Full-length Assembly and Quantification of Alternatively Spliced Isoforms in Circular RNAs
Cited by: 36
Author(s): Jing Wu, Yan Li, Wang Cheng, Yiqiang Cui, Tianyi Xu, Chang Wang, Xiao Wang, Jiahao Sha, Bin Jiang, Kai Wang, Zhibin Hu, Xuejiang Guo, Xiaofeng Song
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1009294

CircRNA ARFGEF1 functions as a ceRNA to promote oncogenic KSHV-encoded viral interferon regulatory factor induction of cell invasion and angiogenesis by upregulating glutaredoxin 3
Cited by: 19
Author(s): Shuang Yao, Xuemei Jia, Fei Wang, Liuxue Sheng, Pengkun Song, Yuan Cao, Hongjuan Shi, Weifei Fan, Xiangya Ding, Shou‐Jiang Gao, Chun Liu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-52932-w

Identification and characterization of circular RNAs in Ganoderma lucidum
Cited by: 15
Author(s): Junjie Shao, Liqiang Wang, Xinyue Liu, Meng Yang, Haimei Chen, Bin Wu, Chang Liu
Software Mentions: 2
Published: almost 5 years ago

10.7150/thno.59546

Circular RNA circRHOBTB3 represses metastasis by regulating the HuR-mediated mRNA stability of PTBP1 in colorectal cancer
Cited by: 67
Author(s): Jiaxin Chen, Yizheng Wu, Xin Luo, Dongai Jin, Wei Zhou, Zhenyu Ju, Di Wang, Qingguo Meng, Wang Hui-juan, Xin Fu, Jianbin Xu, Zhangfa Song
Software Mentions: 2
Published: over 3 years ago

10.7150/ijms.48014

circRNA expression pattern and ceRNA network in the pathogenesis of aseptic loosening after total hip arthroplasty
Cited by: 4
Author(s): Shenghui Ni, Tianlong Jiang, Shimin Hao, Peng Luo, Penghao Wang, Yaser Almatari, Yu Wang, Zhe Zhang, Lei Guo
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21114162

Identification of circRNA-Associated-ceRNA Networks Involved in Milk Fat Metabolism under Heat Stress
Cited by: 29
Author(s): Dongyang Wang, Zujing Chen, Xiaona Zhuang, Junyi Luo, Ting Chen, Qianyun Xi, Yongliang Zhang, Jiajie Sun
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.600632

Analysis of Age-Related Circular RNA Expression Profiles in Mesenchymal Stem Cells of Rat Bone Marrow
Cited by: 9
Author(s): Hui Sun, Yanan Sun, Xiao Yu, Xin Gao, Huan Wang, Lin Zhang, Yingai Shi, Xu He
Software Mentions: 1
Published: about 3 years ago

10.3389/fgene.2019.00088

CircRNAs Are Here to Stay: A Perspective on the MLL Recombinome
Cited by: 16
Author(s): Anna Dal Molin, Silvia Bresolin, Enrico Gaffo, Caterina Tretti, Elena Boldrin, Lueder Hinrich Meyer, Paola Guglielmelli, Alessandro M. Vannucchi, G. te Kronnie, Stefania Bortoluzzi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12575-020-00122-8

Deep Insights in Circular RNAs: from biogenesis to therapeutics
Cited by: 53
Author(s): Peerzada Tajamul Mumtaz, Qamar Taban, Muneer Ahmad Dar, Mir Shabir, Zulfkar ul Haq, Sajad Majeed Zargar, Riaz Ahmad Shah, Syed Mudasir Ahmad
Software Mentions: 1
Published: over 4 years ago

10.3389/fcvm.2021.672600

Circular RNAs and Cardiovascular Regeneration
Cited by: 4
Author(s): Ling Tang, Pengsheng Li, Michelle Jang, Wuqiang Zhu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-019-1814-8

circHECTD1 facilitates glutaminolysis to promote gastric cancer progression by targeting miR-1256 and activating β-catenin/c-Myc signaling
Cited by: 76
Author(s): Juan Cai, Zhiqiang Chen, Jinguo Wang, Junfeng Wang, Xianjun Chen, Linhu Liang, Min Huang, Zhengrong Zhang, Xueliang Zuo
Software Mentions: 1
Published: about 5 years ago

10.7150/thno.45302

Estrogen-induced circRNA, circPGR, functions as a ceRNA to promote estrogen receptor-positive breast cancer cell growth by regulating cell cycle-related genes
Cited by: 39
Author(s): Lei Wang, Yi Jia, Lingyun Lu, Yueying Zhang, Lan Wang, Guo-Sheng Hu, Yichen Liu, Jian Ding, Hai‐feng Shen, Fangqing Zhao, Haihua Huang, Wen Li
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22041503

Circular RNAs as Novel Regulators of β-Cell Functions under Physiological and Pathological Conditions
Cited by: 15
Author(s): Flora Brozzi, Romano Regazzi
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-018-1006-x

RNA sequencing reveals the expression profiles of circRNA and indicates that circDDX17 acts as a tumor suppressor in colorectal cancer
Cited by: 171
Author(s): Xiangnan Li, Zhenjun Wang, Chun-Xiang Ye, Bi Zhao, Zhu-Lin Li, Yong Yang
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.8757

CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms
Cited by: 12
Author(s): Artem Nedoluzhko, Fedor Sharko, Golam Rbbani, Anton Teslyuk, Ioannis T. Konstantinidis, Jorge M.O. Fernandes
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-6377-7

Genomewide analysis of circular RNA in pituitaries of normal and heat-stressed sows
Cited by: 6
Author(s): Haojie Zhang, Bao-Yu Hu, Jiali Xiong, Ting Chen, Qianyun Xi, Junyi Luo, Qingyan Jiang, Jiajie Sun, Yongliang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13073-019-0663-5

Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines
Cited by: 110
Author(s): Hang Ruan, Xiang Yu, Junsuk Ko, Shengli Li, Ying Jing, Xiaoyu Zhu, Youqiong Ye, Zhao Zhang, Tingting Mills, Jing Feng, Chunjie Liu, Jing Ji, Jin Cao, Bingying Zhou, Li Wang, Yubin Zhou, Chunru Lin, An‐Yuan Guo, Xi Chen, Lixia Diao, Wenbo Li, Zhiao Chen, Xianghuo He, Gordon B. Mills, Michael R. Blackburn, Leng Han
Software Mentions: 1
Published: about 5 years ago

10.1186/s12943-019-1061-8

RNA-Seq profiling of circular RNA in human lung adenocarcinoma and squamous cell carcinoma
Cited by: 130
Author(s): Chengdi Wang, Shuangyan Tan, Wenrong Liu, Qian Lei, Wenliang Qiao, Yangping Wu, Xiaoqi Liu, Wei Cheng, Yuquan Wei, Yong Peng, Weimin Liu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12943-019-1080-5

CircPLEKHM3 acts as a tumor suppressor through regulation of the miR-9/BRCA1/DNAJB6/KLF4/AKT1 axis in ovarian cancer
Cited by: 89
Author(s): Lei Zhang, Qing Zhou, Qiongzi Qiu, Ling Hou, Mengting Wu, Jia Li, Xufan Li, Bingjian Lü, Xiaodong Cheng, Pengyuan Liu, Weiguo Lü, Yan Lu
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.203347

CircRNA circFOXK2 facilitates oncogenesis in breast cancer via IGF2BP3/miR-370 axis
Cited by: 25
Author(s): Wei Zhang, Hui Liu, Junjie Jiang, Yunyun Yang, Wenjie Wang, Zhengyan Jia
Software Mentions: 1
Published: about 3 years ago

10.3390/genes11091111

Beyond Back Splicing, a Still Poorly Explored World: Non-Canonical Circular RNAs
Cited by: 15
Author(s): Annie Robic, Christa Kühn
Software Mentions: 1
Published: almost 4 years ago

10.1093/schbul/sby018.975

S188. DYSREGULATION OF CIRCULAR RNA EXPRESSION IN SCHIZOPHRENIA OBSERVED IN POSTMORTEM DORSOLATERAL PREFRONTAL CORTEX
Cited by: 0
Author(s): Elena Mahmoudi, Chantel Fitzsimmons, Michael Geaghan, Murray J. Cairns
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.716073

circCDYL2, Overexpressed in Highly Migratory Colorectal Cancer Cells, Promotes Migration by Binding to Ezrin
Cited by: 7
Author(s): Xiaomin Li, Jianjun Wang, Huaicheng Long, Wen‐Cheng Lin, Haowei Wang, Yujia Chen, Qinzi Yuan, Xuenong Li
Software Mentions: 1
Published: about 3 years ago

Projects: pypi: CIRCexplorer2

Papers Mentioning CIRCexplorer2 79