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Papers: 10.3390/ijms21010293

https://doi.org/10.3390/ijms21010293

Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data

Cited by: 8
Author(s): Giulio Ferrero, Nicola Licheri, Lucia Coscujuela Tarrero, Carlo De Intinis, Valentina Miano, Raffaele Calogero, Francesca Cordero, Michele De Bortoli, Marco Beccuti
Published: over 5 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: Ularcirc
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)
Papers that mentioned: 2
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
Papers that mentioned: 99
Very Likely Science (100)
pypi: CIRCexplorer2
Circular RNA analysis toolkits
Papers that mentioned: 79
Very Likely Science (100)
pypi: circtools
circtools - a circular RNA toolbox
Papers that mentioned: 7
Very Likely Science (100)
pypi: docker
A Python library for the Docker Engine API.
Papers that mentioned: 39
Very Likely Science (100)
pypi: FUCHS
FUll circular RNA CHaracterization from RNA-Seq
Papers that mentioned: 10
Very Likely Science (100)