Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: FUCHS

https://packages.ecosyste.ms/registries/pypi.org/packages/FUCHS

FUll circular RNA CHaracterization from RNA-Seq
2 versions
Latest release: almost 2 years ago
15 downloads last month

Papers Mentioning FUCHS 10

Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data
Cited by: 8
Author(s): Giulio Ferrero, Nicola Licheri, Lucia Coscujuela Tarrero, Carlo De Intinis, Valentina Miano, Raffaele Calogero, Francesca Cordero, Michele De Bortoli, Marco Beccuti
Software Mentions: 8
Published: almost 5 years ago

10.3390/cells10040921

Sex-Biased lncRNA Signature in Fetal Growth Restriction (FGR)
Cited by: 2
Author(s): Aleksandra Lipka, J Jastrzebski, Łukasz Paukszto, Karol G Makowczenko, Elżbieta Łopieńska–Biernat, Marek Gowkielewicz, Ewa Lepiarczyk, Marta Wiszpolska, Mariusz Majewski, Marta Majewska
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.2934

FUCHS—towards full circular RNA characterization using RNAseq
Cited by: 43
Author(s): Franziska Metge, Lisa F. Czaja-Hasse, Richard Reinhardt, Chistoph Dieterich
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13059-020-02018-y

CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes
Cited by: 217
Author(s): Wanying Wu, Peifeng Ji, Fangqing Zhao
Software Mentions: 4
Published: over 4 years ago

10.1155/2020/9084901

FcircSEC: An R Package for Full Length circRNA Sequence Extraction and Classification
Cited by: 7
Author(s): Tofazzal Hossain, Yin Peng, Shijie Feng, Yanjie Wei
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.10032

The mechanism and detection of alternative splicing events in circular RNAs
Cited by: 13
Author(s): Xiaohan Li, Bing Zhang, Fuyu Li, Kequan Yu, Ya Mei Bai
Software Mentions: 2
Published: about 4 years ago

10.1186/s13073-019-0614-1

Reconstruction of full-length circular RNAs enables isoform-level quantification
Cited by: 106
Author(s): Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22137119

Function of Circular RNAs in Fish and Their Potential Application as Biomarkers
Cited by: 19
Author(s): Golam Rbbani, Artem Nedoluzhko, Jorge Galindo-Villegas, Jorge M.O. Fernandes
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-018-0699-2

Profiling and functional analysis of circular RNAs in acute promyelocytic leukemia and their dynamic regulation during all-trans retinoic acid treatment
Cited by: 47
Author(s): Shufen Li, Yunlin Ma, Yun Tan, Xuefei Ma, Ming Zhao, Bing Chen, Rongsheng Zhang, Chen Zhu, Kankan Wang
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.5503

A comprehensive review of circRNA: from purification and identification to disease marker potential
Cited by: 84
Author(s): Sheng Xu, Luqian Zhou, Murugavel Ponnusamy, Lixia Zhang, Yanhan Dong, Yanhui Zhang, Qi Wang, Jing Liu, Kun Wang
Software Mentions: 1
Published: over 6 years ago