Projects: pypi: FUCHS
https://packages.ecosyste.ms/registries/pypi.org/packages/FUCHS
FUll circular RNA CHaracterization from RNA-Seq
2 versions
Latest release: over 3 years ago
15 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Dieterich Lab (organization)
Section of Bioinformatics and Systems Cardiology at the University Hospital Heidelberg Academic
Section of Bioinformatics and Systems Cardiology at the University Hospital Heidelberg Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+4
Science terms in README
2 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning FUCHS 10
10.3390/ijms21010293
Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq DataCited by: 8
Author(s): Giulio Ferrero, Nicola Licheri, Lucia Coscujuela Tarrero, Carlo De Intinis, Valentina Miano, Raffaele Calogero, Francesca Cordero, Michele De Bortoli, Marco Beccuti
Software Mentions: 8
Published: over 6 years ago
10.3390/cells10040921
Sex-Biased lncRNA Signature in Fetal Growth Restriction (FGR)Cited by: 2
Author(s): Aleksandra Lipka, J Jastrzebski, Łukasz Paukszto, Karol G Makowczenko, Elżbieta Łopieńska–Biernat, Marek Gowkielewicz, Ewa Lepiarczyk, Marta Wiszpolska, Mariusz Majewski, Marta Majewska
Software Mentions: 6
Published: about 5 years ago
10.7717/peerj.2934
FUCHS—towards full circular RNA characterization using RNAseqCited by: 43
Author(s): Franziska Metge, Lisa F. Czaja-Hasse, Richard Reinhardt, Chistoph Dieterich
Software Mentions: 4
Published: over 9 years ago
10.1186/s13059-020-02018-y
CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomesCited by: 217
Author(s): Wanying Wu, Peifeng Ji, Fangqing Zhao
Software Mentions: 4
Published: about 6 years ago
10.1155/2020/9084901
FcircSEC: An R Package for Full Length circRNA Sequence Extraction and ClassificationCited by: 7
Author(s): Tofazzal Hossain, Yin Peng, Shijie Feng, Yanjie Wei
Software Mentions: 4
Published: about 6 years ago
10.7717/peerj.10032
The mechanism and detection of alternative splicing events in circular RNAsCited by: 13
Author(s): Xiaohan Li, Bing Zhang, Fuyu Li, Kequan Yu, Ya Mei Bai
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13073-019-0614-1
Reconstruction of full-length circular RNAs enables isoform-level quantificationCited by: 106
Author(s): Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao
Software Mentions: 2
Published: over 7 years ago
10.3390/ijms22137119
Function of Circular RNAs in Fish and Their Potential Application as BiomarkersCited by: 19
Author(s): Golam Rbbani, Artem Nedoluzhko, Jorge Galindo-Villegas, Jorge M.O. Fernandes
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41419-018-0699-2
Profiling and functional analysis of circular RNAs in acute promyelocytic leukemia and their dynamic regulation during all-trans retinoic acid treatmentCited by: 47
Author(s): Shufen Li, Yunlin Ma, Yun Tan, Xuefei Ma, Ming Zhao, Bing Chen, Rongsheng Zhang, Chen Zhu, Kankan Wang
Software Mentions: 2
Published: about 8 years ago
10.7717/peerj.5503
A comprehensive review of circRNA: from purification and identification to disease marker potentialCited by: 84
Author(s): Sheng Xu, Luqian Zhou, Murugavel Ponnusamy, Lixia Zhang, Yanhan Dong, Yanhui Zhang, Qi Wang, Jing Liu, Kun Wang
Software Mentions: 1
Published: almost 8 years ago