Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: CIRCexplorer
https://packages.ecosyste.ms/registries/pypi.org/packages/CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
2 versions
Latest release: over 8 years ago
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Papers Mentioning CIRCexplorer 99
10.1038/s41598-020-78469-x
Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactionsCited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Software Mentions: 23
Published: almost 4 years ago
10.3389/fgene.2020.00548
Rcirc: An R Package for circRNA Analyses and VisualizationCited by: 8
Author(s): Peisen Sun, Haoming Wang, Guanglin Li
Software Mentions: 11
Published: over 4 years ago
10.3389/fgene.2019.00981
CircCode: A Powerful Tool for Identifying circRNA Coding AbilityCited by: 49
Author(s): Peisen Sun, Guanglin Li
Software Mentions: 9
Published: about 5 years ago
10.1186/s13073-020-00812-8
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expressionCited by: 89
Author(s): Trine Line Hauge Okholm, Shashank Sathe, Samuel S. Park, Andreas Bjerregaard Kamstrup, Asta Mannstaedt Rasmussen, Archana Shankar, Zong Ming Chua, Niels Fristrup, Morten Muhlig Nielsen, Søren Vang, Lars Dyrskjøt, Stefan Aigner, Christian Kroun Damgaard, G Yeo, Jakob Skou Pedersen
Software Mentions: 8
Published: almost 4 years ago
10.3390/ijms21010293
Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq DataCited by: 8
Author(s): Giulio Ferrero, Nicola Licheri, Lucia Coscujuela Tarrero, Carlo De Intinis, Valentina Miano, Raffaele Calogero, Francesca Cordero, Michele De Bortoli, Marco Beccuti
Software Mentions: 8
Published: almost 5 years ago
10.1371/journal.pcbi.1006158
Comment on "A comprehensive overview and evaluation of circular RNA detection tools"Cited by: 14
Author(s): Chia-Ying Chen, Trees‐Juen Chuang
Software Mentions: 7
Published: over 5 years ago
10.1186/s12864-018-4670-5
Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjectsCited by: 28
Author(s): Shobana Sekar, Lori Cuyugan, Jonathan Adkins, Philipp Geiger, Winnie S. Liang
Software Mentions: 6
Published: over 6 years ago
10.1371/journal.pcbi.1005420
A comprehensive overview and evaluation of circular RNA detection toolsCited by: 285
Author(s): Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou
Software Mentions: 6
Published: over 7 years ago
10.1093/jmcb/mjz094
A combined computational pipeline to detect circular RNAs in human cancer cells under hypoxic stressCited by: 20
Author(s): Antonella Di Liddo, Camila de Oliveira Freitas Machado, Sandra E. Fischer, Stefanie Ebersberger, Andreas W. Heumüller, Julia E. Weigand, Michaela Müller-McNicoll, Kathi Zarnack
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.ppat.1008346
Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cellsCited by: 28
Author(s): Tzu‐Chun Chen, Marc Talló-Parra, Qian M. Cao, Sebastián Kadener, René Böttcher, Gemma Pérez‐Vilaró, Pakpoom Boonchuen, Kunlaya Somboonwiwat, Juana Díez, Peter Sarnow
Software Mentions: 5
Published: about 4 years ago
10.1155/2017/6218353
Circular RNAs: Biogenesis, Function, and a Role as Possible Cancer BiomarkersCited by: 105
Author(s): Luka Bolha, Metka Ravnik‐Glavač, Damjan Glavač
Software Mentions: 5
Published: almost 8 years ago
10.1186/s13059-021-02497-7
SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAsCited by: 7
Author(s): Alon Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Inés Lucía Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel, Sebastián Kadener
Software Mentions: 5
Published: about 3 years ago
10.1186/s12864-018-4926-0
CircMarker: a fast and accurate algorithm for circular RNA detectionCited by: 23
Author(s): Xin Li, Chong Chu, Jingwen Pei, Ion Măndoiu, Yufeng Wu
Software Mentions: 5
Published: over 6 years ago
10.1186/s12864-020-07200-x
iCLIP analysis of RNA substrates of the archaeal exosomeCited by: 2
Author(s): Jochen Bathke, A. Susann Gauernack, Oliver Rupp, Lennart Weber, Christian Preußer, Marcus Lechner, Oliver Roßbach, Alexander Goesmann, Elena Evguenieva‐Hackenberg, Gabriele Klug
Software Mentions: 4
Published: almost 4 years ago
10.7717/peerj.2934
FUCHS—towards full circular RNA characterization using RNAseqCited by: 43
Author(s): Franziska Metge, Lisa F. Czaja-Hasse, Richard Reinhardt, Chistoph Dieterich
Software Mentions: 4
Published: over 7 years ago
10.1155/2021/6672899
Comparative Transcriptome Analysis Reveals Relationship among mRNAs, lncRNAs, and circRNAs of Slow Transit ConstipationCited by: 2
Author(s): Shuai Yan, Yinzi Yue, Mingming Sun, Yinghui Chen, Xiaopeng Wang, Haihua Qian
Software Mentions: 4
Published: about 3 years ago
10.3389/fcell.2018.00020
Improved circRNA Identification by Combining Prediction AlgorithmsCited by: 123
Author(s): Thomas B. Hansen
Software Mentions: 4
Published: over 6 years ago
10.3389/fgene.2021.627907
Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe EpilepsyCited by: 13
Author(s): Andreia Gomes‐Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Software Mentions: 4
Published: almost 4 years ago
10.1155/2020/9084901
FcircSEC: An R Package for Full Length circRNA Sequence Extraction and ClassificationCited by: 7
Author(s): Tofazzal Hossain, Yin Peng, Shijie Feng, Yanjie Wei
Software Mentions: 4
Published: over 4 years ago
10.1038/srep38820
Acfs: accurate circRNA identification and quantification from RNA-Seq dataCited by: 67
Author(s): Xintian You, Tim Conrad
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12870-019-2087-1
Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)Cited by: 34
Author(s): Xing-Zheng Fu, Xiaoyong Zhang, Jie-Ya Qiu, Xue Zhou, Meng Yuan, Yuan He, Chun ChangPin, Li Cao, Lili Li, Peng LiangZhi
Software Mentions: 4
Published: almost 5 years ago
10.3389/fpls.2020.587185
Comprehensive Identification and Expression Profiling of Circular RNAs During Nodule Development in Phaseolus vulgarisCited by: 9
Author(s): Zhihua Wu, Wen Huang, Erdai Qin, Shuo Liu, Huan Liu, Aleel K. Grennan, Hong Liu, Rui Qin
Software Mentions: 4
Published: about 4 years ago
10.1186/s13059-016-0991-3
Tracing the expression of circular RNAs in human pre-implantation embryosCited by: 132
Author(s): Yujiao Dang, Liying Yan, Boqiang Hu, Xiaoying Fan, Yixuan Ren, Rong Li, Ying Lian, Jie Yan, Qingqing Li, Yan Zhang, Min Li, Xiaojun Ren, Jin Huang, Yuqi Wu, Ping Liu, Lu Wen, Chen Zhang, Yanyi Huang, Fuchou Tang
Software Mentions: 4
Published: over 8 years ago
10.1038/s41598-018-35086-z
RETRACTED ARTICLE: Non-coding RNAome of RPE cells under oxidative stress suggests unknown regulative aspects of Retinitis pigmentosa etiopathogenesisCited by: 16
Author(s): Luigi Donato, Concetta Scimone, Carmela Rinaldi, Rosalia D’Angelo, Antonina Sidoti
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-017-14807-w
Heterogeneous circRNA expression profiles and regulatory functions among HEK293T single cellsCited by: 5
Author(s): Chunrong Zhong, Shaojun Yu, Maozhen Han, Jiahuan Chen, Kang Ning
Software Mentions: 3
Published: about 7 years ago
10.18632/oncotarget.21694
Unique expression signatures of circular RNAs in response to DNA tumor virus SV40 infectionCited by: 19
Author(s): Jiandong Shi, Ningzhu Hu, Jianfang Li, Zong Yuan Zeng, Ling Mo, Jing Sun, Man‐Li C. Wu, Yunzhang Hu
Software Mentions: 3
Published: about 7 years ago
10.18632/aging.102576
Circular RNA SMO sponges miR-338-3p to promote the growth of glioma by enhancing the expression of SMOCited by: 22
Author(s): Xiong Zhang, Chaoyang Zhou, Luyang Wang, Ronglan Zhu, Liangchen Zhong, Dengfeng Wan, Qiangping Wang
Software Mentions: 3
Published: almost 5 years ago
10.3390/cells9010025
Depolarization-Associated CircRNA Regulate Neural Gene Expression and in Some Cases May Function as Templates for TranslationCited by: 28
Author(s): Elena Mahmoudi, Dylan Kiltschewskij, Chantel Fitzsimmons, Murray J. Cairns
Software Mentions: 3
Published: almost 5 years ago
10.18632/oncotarget.24522
Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysisCited by: 28
Author(s): Lucia Coscujuela Tarrero, Giulio Ferrero, Valentina Miano, Carlo De Intinis, Luisa Ricci, Maddalena Arigoni, Federica Riccardo, Laura Annaratone, Isabella Castellano, Raffaele Calogero, Marco Beccuti, Francesca Cordero, Michele De Bortoli
Software Mentions: 3
Published: over 6 years ago
10.1155/2020/6798590
Disease-Associated Circular RNAs: From Biology to Computational IdentificationCited by: 12
Author(s): Min Tang, Ling Kui, Guanyi Lu, Wenqiang Chen
Software Mentions: 3
Published: about 4 years ago
10.3389/fonc.2021.669270
A Comprehensive RNA Study to Identify circRNA and miRNA Biomarkers for Docetaxel Resistance in Breast CancerCited by: 11
Author(s): Peide Huang, Fengyu Li, Zongchao Mo, Chunyu Geng, Wen Fang, Chunyan Zhang, Jia Guo, Song Wu, Lin Li, Nils Brünner, Jan Stenvang
Software Mentions: 3
Published: over 3 years ago
10.1186/s12931-018-0962-1
Circular RNAs: a rising star in respiratory diseasesCited by: 60
Author(s): Jian Wang, Mengchan Zhu, Jue Pan, Cuicui Chen, Shijin Xia, Yuanlin Song
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13059-019-1701-8
Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortexCited by: 47
Author(s): Zelin Liu, Yuan Ran, Changyu Tao, Sichen Li, Jian Chen, Ence Yang
Software Mentions: 3
Published: over 5 years ago
10.3389/fcell.2020.00273
Non-coding RNAs in Nervous System Development and DiseaseCited by: 34
Author(s): Beatrice Salvatori, Silvia Biscarini, Mariangela Morlando
Software Mentions: 3
Published: over 4 years ago
10.3390/genes9110536
WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNACited by: 19
Author(s): Xiaoyong Pan, Kai Xiong, Christian Anthon, Poul Hyttel, Kristine Freude, Lars Juhl Jensen, Jan Gorodkin
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.gpb.2019.03.004
CircAST: Full-length Assembly and Quantification of Alternatively Spliced Isoforms in Circular RNAsCited by: 36
Author(s): Jing Wu, Yan Li, Wang Cheng, Yiqiang Cui, Tianyi Xu, Chang Wang, Xiao Wang, Jiahao Sha, Bin Jiang, Kai Wang, Zhibin Hu, Xuejiang Guo, Xiaofeng Song
Software Mentions: 2
Published: about 5 years ago
10.1038/hortres.2017.31
New technologies accelerate the exploration of non-coding RNAs in horticultural plantsCited by: 48
Author(s): Degao Liu, Ritesh Mewalal, Rongbin Hu, Gerald A. Tuskan, Xiaohan Yang
Software Mentions: 2
Published: over 7 years ago
10.1111/jcmm.14550
Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosisCited by: 18
Author(s): Guangping Lu, Jinjin Zhang, Xiangyong Liu, Wenbo Liu, Guohong Cao, Changjun Lv, Xiaoli Zhang, Pan Xu, Minge Li, Xiaodong Song
Software Mentions: 2
Published: about 5 years ago
10.1186/s12943-019-1121-0
Functions and clinical significance of circular RNAs in gliomaCited by: 117
Author(s): Jikui Sun, Banban Li, Chang Shu, Quanfeng Ma, Jinhuan Wang
Software Mentions: 2
Published: over 4 years ago
10.1038/srep39080
Identification and characterization of human testis derived circular RNAs and their existence in seminal plasmaCited by: 96
Author(s): Wei Dong, Huimin Li, Xingrong Qing, Donghui Huang, Honggang Li
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12920-019-0616-2
High-throughput RNA sequencing from paired lesional- and non-lesional skin reveals major alterations in the psoriasis circRNAomeCited by: 43
Author(s): Liviu Ionut Moldovan, Thomas B. Hansen, Morten T. Venø, Trine Line Hauge Okholm, Thomas Levin Andersen, Henrik Hager, Lars Iversen, Jørgen Kjems, Claus Johansen, Lasse Sommer Kristensen
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-38860-9
Circular RNAs are temporospatially regulated throughout development and ageing in the ratCited by: 60
Author(s): Elena Mahmoudi, Murray J. Cairns
Software Mentions: 2
Published: over 5 years ago
10.1186/s13287-018-0793-5
Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytesCited by: 58
Author(s): Wei Lei, Tingting Feng, Xing Fang, Yu You, Yangxin Li, Zhen-Ao Zhao, Junwei Liu, Zhenya Shen, Wenbo Deng, Shijun Hu
Software Mentions: 2
Published: over 6 years ago
10.1186/s12870-019-1712-3
Identification of cucumber circular RNAs responsive to salt stressCited by: 68
Author(s): Yong‐Guan Zhu, Jianhua Jia, Lei Yang, Yuchen Xia, Huili Zhang, Jinbu Jia, Ran Zhou, Pei-Yao Nie, Junliang Yin, Dongfang Ma, Lecheng Liu
Software Mentions: 2
Published: over 5 years ago
10.1155/2016/4503840
Profiling of the Predicted Circular RNAs in Ductal In Situ and Invasive Breast Cancer: A Pilot StudyCited by: 30
Author(s): Marco Galasso, Giorgio Costantino, Lorenzo Pasquali, Linda Minotti, Federica Baldassari, Fabio Corrà, Chiara Agnoletto, Stefano Volinia
Software Mentions: 2
Published: almost 9 years ago
10.7717/peerj.7602
Identification and characterization of circRNAs as competing endogenous RNAs for miRNA-mRNA in colorectal cancerCited by: 36
Author(s): Wenliang Yuan, Syd S. Peng, Jingyu Wang, Wei Cai, Zhen Ye, Ye Wang, Meiliang Wang, Hao Xu, Shouwen Jiang, Dan Sun, Chaoxu Dai, Linhua Jiang, Xiaobo Li
Software Mentions: 2
Published: about 5 years ago
10.3390/ijms19102897
An Efficient Algorithm for Sensitively Detecting Circular RNA from RNA-seq DataCited by: 5
Author(s): Xuanping Zhang, Yidan Wang, Zhongmeng Zhao, Jiayin Wang
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pcbi.1008338
seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing dataCited by: 11
Author(s): Mohamed Chaabane, Kalina Andreeva, Jin-Hee Hwang, Tae Lim Kook, Juw Won Park, Nigel G. F. Cooper
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms21175972
Circular RNAs in Hematopoiesis with a Focus on Acute Myeloid Leukemia and Myelodysplastic SyndromeCited by: 5
Author(s): Michaela Dostálová Merkerová, Zdeněk Krejčík, Katarína Szikszai, Dávid Kundrát
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms22137119
Function of Circular RNAs in Fish and Their Potential Application as BiomarkersCited by: 19
Author(s): Golam Rbbani, Artem Nedoluzhko, Jorge Galindo-Villegas, Jorge M.O. Fernandes
Software Mentions: 2
Published: over 3 years ago
10.18632/oncotarget.22846
Circular RNAs: clinical relevance in cancerCited by: 49
Author(s): Zhijie Xu, Yuanliang Yan, Shuangshuang Zeng, Shuang Dai, Xi Chen, Jie Wei, Zhicheng Gong
Software Mentions: 2
Published: almost 7 years ago
10.1093/bioinformatics/btab288
JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sitesCited by: 9
Author(s): Jyun-Yu Jiang, Chelsea J.‐T. Ju, Junheng Hao, Muhao Chen, Wei Wang
Software Mentions: 2
Published: over 3 years ago
10.1093/biomethods/bpaa010
ACValidator: A novel assembly-based approach for in silico verification of circular RNAsCited by: 4
Author(s): Shobana Sekar, Philipp Geiger, Jonathan Adkins, Erica E. Tassone, Geidy E. Serrano, Thomas G. Beach, Winnie S. Liang
Software Mentions: 2
Published: almost 5 years ago
10.3390/biology10090830
Comprehensive CircRNA Profiling and Selection of Key CircRNAs Reveal the Potential Regulatory Roles of CircRNAs throughout Ovarian Development and Maturation in Cynoglossus semilaevisCited by: 6
Author(s): Jing Li, Shaowen Bao, Chongnv Wang, Changwei Shao, Xuezhou Liu, Daiqiang Zhang
Software Mentions: 2
Published: about 3 years ago
10.1093/database/baaa039
GreenCircRNA: a database for plant circRNAs that act as miRNA decoysCited by: 23
Author(s): Jingjing Zhang, Zhiqiang Hao, Shuwei Yin, Guanglin Li
Software Mentions: 2
Published: almost 5 years ago
10.3389/fgene.2019.00176
Transcriptomics Analysis of Circular RNAs Differentially Expressed in Apoptotic HeLa CellsCited by: 8
Author(s): Bilge Yaylak, İpek Erdoğan, Bünyamin Akgül
Software Mentions: 2
Published: over 5 years ago
10.1155/2018/8518563
Profiling and Bioinformatic Analyses Indicate Differential circRNA and miRNA/isomiR Expression and InteractionsCited by: 7
Author(s): Li Guo, Liang Zheng, Yang Zhao, Qianyun Wang
Software Mentions: 2
Published: almost 7 years ago
10.3389/fimmu.2018.02977
Circular RNAs and Their Emerging Roles in Immune RegulationCited by: 71
Author(s): Lan Yang, Jinrong Fu, Yufeng Zhou
Software Mentions: 2
Published: almost 6 years ago
10.1155/2020/5732124
Transcriptomic Analysis of circRNAs in the Peripheral Blood of Nonarteritic Anterior Ischemic Optic NeuropathyCited by: 2
Author(s): Jinshan Suo, Xinling Xu, Haoyan Xu, Nai-Fang Hou, Jiaming Zhang, Xiao Han, Yuanna Zheng, Xinling Wang
Software Mentions: 2
Published: almost 4 years ago
10.18632/aging.202656
Determining the influence of high glucose on exosomal lncRNAs, mRNAs, circRNAs and miRNAs derived from human renal tubular epithelial cellsCited by: 12
Author(s): Sijie Zhou, Jiuyuan Fang, Mingyang Hu, Shaokang Pan, Dongwei Li, Guolan Xing, Zhangsuo Liu
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-019-6020-7
Genome-wide identification of circular RNAs in peanut (Arachis hypogaea L.)Cited by: 15
Author(s): Xingguo Zhang, Xingli Ma, Longlong Ning, Zhongfeng Li, Kunkun Zhao, Ke Li, Jialin He, Dongmei Yin
Software Mentions: 2
Published: about 5 years ago
10.1002/cam4.1514
A novel plasma circular <scp>RNA</scp> circ<scp>FARSA</scp> is a potential biomarker for non‐small cell lung cancerCited by: 160
Author(s): Dong Hang, Jing Zhou, Na Qin, Wen Zhou, Hongxia Ma, Guangfu Jin, Zhibin Hu, Juncheng Dai, Hongbing Shen
Software Mentions: 2
Published: over 6 years ago
10.1534/g3.120.401331
Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (<i>Lactuca sativa</i>)Cited by: 5
Author(s): Zhenchao Yang, Yang Zhao, Yuanyuan Xie, Qi Liu, Yanhao Mei, Yongjun Wu
Software Mentions: 2
Published: over 4 years ago
10.3390/genes8120353
Circular RNAs (circRNAs) in Health and DiseaseCited by: 201
Author(s): Syed Ehtaishamul Haque, Lorna W. Harries
Software Mentions: 1
Published: almost 7 years ago
10.18632/aging.101919
Identification of noncoding RNA expression profiles and regulatory interaction networks following traumatic spinal cord injury by sequence analysisCited by: 26
Author(s): Wenzhao Wang, Yanlin Su, Shi Tang, Hongfei Li, Wei Xie, Jianan Chen, Lin Shen, Xinda Pan, Bin Ning
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.203002
Circular RNA Plek promotes fibrogenic activation by regulating the miR-135b-5p/TGF-βR1 axis after spinal cord injuryCited by: 11
Author(s): Wenzhao Wang, Dong He, Jianan Chen, Zhengdong Zhang, Shaoyi Wang, Yunpeng Jiang, Jianlu Wei
Software Mentions: 1
Published: over 3 years ago
10.3390/antiox9040318
Transcriptome Analyses of lncRNAs in A2E-Stressed Retinal Epithelial Cells Unveil Advanced Links between Metabolic Impairments Related to Oxidative Stress and Retinitis PigmentosaCited by: 46
Author(s): Luigi Donato, Concetta Scimone, Simona Alibrandi, Carmela Rinaldi, Antonina Sidoti, Rosalia D’Angelo
Software Mentions: 1
Published: over 4 years ago
10.1186/s13075-021-02420-2
Circular RNAs in osteoarthritis: indispensable regulators and novel strategies in clinical implicationsCited by: 24
Author(s): Wenchao Zhang, Lin Qi, Ruiqi Chen, Jieyu He, Zhongyue Liu, Wanchun Wang, Chao Tu, Zhihong Li
Software Mentions: 1
Published: almost 4 years ago
10.1155/2019/9681863
Low Expression of hsa_circ_0018069 in Human Bladder Cancer and Its Clinical SignificanceCited by: 12
Author(s): Mingshan Li, Yixiang Wang, Yili Liu, Xiling Zhang, Jie Liu, Ping Wang
Software Mentions: 1
Published: over 5 years ago
10.1016/j.bdq.2019.100085
Establishing essential quality criteria for the validation of circular RNAs as biomarkersCited by: 10
Author(s): Christina Pfafenrot, Christian Preußer
Software Mentions: 1
Published: over 5 years ago
10.1042/BSR20194512
Circular RNA expression profile of lung squamous cell carcinoma: identification of potential biomarkers and therapeutic targetsCited by: 19
Author(s): Yawei Wang, Haiyan Zhang, Jian Wang, Bei Li, Xiuwen Wang
Software Mentions: 1
Published: over 4 years ago
10.20892/j.issn.2095-3941.2020.0275
Current research on circular RNAs and their potential clinical implications in breast cancerCited by: 6
Author(s): Diya Liu, Fang Lin
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12943-019-1069-0
Biogenesis, functions and clinical significance of circRNAs in gastric cancerCited by: 138
Author(s): Chan Shan, Yinfeng Zhang, Xiaodan Hao, Jinling Gao, Xinzhe Chen, Kun Wang
Software Mentions: 1
Published: about 5 years ago
10.1186/s12943-017-0630-y
Circles reshaping the RNA world: from waste to treasureCited by: 302
Author(s): Jing Liu, Tian Liu, Xiaman Wang, Aili He
Software Mentions: 1
Published: over 7 years ago
10.1186/s12943-019-1113-0
Circular RNAs in the tumour microenvironmentCited by: 55
Author(s): Zhonghua Ma, You Shuai, Xiangyu Gao, Wen Xi, Jiafu Ji
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12943-020-01163-z
CircMUC16 promotes autophagy of epithelial ovarian cancer via interaction with ATG13 and miR-199aCited by: 85
Author(s): Xiaoliang Gan, Hongtao Zhu, Xingwei Jiang, Samuel Chigbo Obiegbusi, Min Yong, Xingtao Long, Jianguo Hu
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.6267
Genome-wide analysis of circular RNAs in goat skin fibroblast cells in response to Orf virus infectionCited by: 17
Author(s): Feng Pang, Mengmeng Zhang, Xinggang Yang, Guohua Li, Shu Zhu, Xin Nie, Ruiyong Cao, Zhenxing Zhang, Haifeng Huang, Baobao Li, Chengqiang Wang, Lijun Du, Yafei Wang
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pcbi.1006916
Details in the evaluation of circular RNA detection tools: Reply to Chen and ChuangCited by: 6
Author(s): Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers12092464
Circular RNAs: A New Piece in the Colorectal Cancer PuzzleCited by: 38
Author(s): Pinelopi I Artemaki, Andreas Scorilas, Christos K. Kontos
Software Mentions: 1
Published: about 4 years ago
10.1186/s11658-019-0178-5
Current prevalence status of gastric cancer and recent studies on the roles of circular RNAs and methods used to investigate circular RNAsCited by: 30
Author(s): Fei Jiang, Xiaobing Shen
Software Mentions: 1
Published: about 5 years ago
10.1038/cr.2017.31
Extensive translation of circular RNAs driven by N6-methyladenosineCited by: 1,230
Author(s): Yun Yang, Xiaojuan Fan, Miaowei Mao, Xuehang Song, Ping Wu, Yang Zhang, Yongfeng Jin, Yi Yang, Ling Ling Chen, Yang Wang, Catherine C. L. Wong, Xinshu Xiao, Zefeng Wang
Software Mentions: 1
Published: over 7 years ago
10.12688/f1000research.9511.1
Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lensCited by: 2
Author(s): Sushant Bangru, Auinash Kalsotra
Software Mentions: 1
Published: almost 8 years ago
10.3389/fcell.2020.584051
Circular RNAs: Functions and Clinical Significance in Cardiovascular DiseaseCited by: 34
Author(s): Lei Zhang, Yuan Zhang, Yin Wang, Yanfang Zhao, Han Ding, Peifeng Li
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2021.665233
Advances in the Identification of Circular RNAs and Research Into circRNAs in Human DiseasesCited by: 32
Author(s): Shihu Jiao, Song Wu, Shan Huang, Mingyang Li, Bo Gao
Software Mentions: 1
Published: over 3 years ago
10.3389/fmolb.2020.00091
Characterization and Function of Circular RNAs in PlantsCited by: 42
Author(s): Peijing Zhang, Sida Li, Ming Chen
Software Mentions: 1
Published: over 4 years ago
10.3389/fonc.2021.703461
Machine Learning-Based Comparative Analysis of Pan-Cancer and Pan-Normal Tissues Identifies Pan-Cancer Tissue-Enriched circRNAs Related to Cancer Mutations as Potential Exosomal BiomarkersCited by: 2
Author(s): Xuezhu Wang, Yucheng Dong, Zilong Wu, Guanqun Wang, You Shi, Yongchang Zheng
Software Mentions: 1
Published: about 3 years ago
10.3389/fphys.2020.580465
Circular RNAs in Cardiac Regeneration: Cardiac Cell Proliferation, Differentiation, Survival, and ReprogrammingCited by: 11
Author(s): Julia Mester-Tonczar, Ena Hašimbegović, Andreas Spannbauer, Denise Traxler, Nina Kastner, Katrin Zlabinger, Patrick Einzinger, Noémi Pávó, Georg Goliasch, Mariann Gyöngyösi
Software Mentions: 1
Published: about 4 years ago
10.3389/fphys.2016.00355
Circular RNAs as Promising Biomarkers: A Mini-ReviewCited by: 63
Author(s): Nadiah Abu, A. Rahman A. Jamal
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2019.00379
Present Scenario of Circular RNAs (circRNAs) in PlantsCited by: 52
Author(s): Wei Zhao, Shanshan Chu, Yongqing Jiao
Software Mentions: 1
Published: over 5 years ago
10.1007/s00401-021-02306-2
Circular RNA profiling distinguishes medulloblastoma groups and shows aberrant RMST overexpression in WNT medulloblastomaCited by: 11
Author(s): Daniel Rickert, Jasmin Bartl, Daniel Picard, Flavia Bernardi, Nan Qin, Marta Lovino, Stéphanie Puget, Frank Meyer, Idriss Mahoungou Koumba, Thomas Beez, Pascale Varlet, Christelle Dufour, Ute Fischer, Arndt Borkhardt, Guido Reifenberger, Olivier Ayrault, Marc Remke
Software Mentions: 1
Published: over 3 years ago
10.1186/s13073-019-0629-7
Circular RNAs as promising biomarkers in cancer: detection, function, and beyondCited by: 53
Author(s): Shengli Li, Leng Han
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.14863
CircNr1h4 regulates the pathological process of renal injury in salt‐sensitive hypertensive mice by targeting miR‐155‐5pCited by: 25
Author(s): Chaosheng Lu, Bicheng Chen, Congcong Chen, Haiyan Li, Dan Wang, Yi Tan, Huachun Weng
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-017-05922-9
Genome-wide identification and characterization of circular RNAs by high throughput sequencing in soybeanCited by: 98
Author(s): Wei Zhao, Yihui Cheng, Chi Zhang, Qingbo You, Xinjie Shen, Wei Guo, Yongqing Jiao
Software Mentions: 1
Published: over 7 years ago
10.1186/s40035-020-00216-z
Exploring the regulatory roles of circular RNAs in Alzheimer’s diseaseCited by: 22
Author(s): Yuan Zhang, Yanfang Zhao, Ying Liu, Man Wang, Wanpeng Yu, Lei Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s13046-018-0870-8
Advances in circular RNAs and their roles in breast CancerCited by: 82
Author(s): Xuehui Wang, Lin Fang
Software Mentions: 1
Published: about 6 years ago
10.1186/s13045-021-01052-y
Regulatory mechanisms, functions, and clinical significance of CircRNAs in triple-negative breast cancerCited by: 22
Author(s): Lijuan Lyu, Shizhen Zhang, Yao Deng, Meng Wang, Xinyue Deng, Shuanying Yang, Ying Wu, Zhijun Dai
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms19113454
Circular RNAs in Muscle Function and DiseaseCited by: 60
Author(s): Simona Greco, Beatrice Cardinali, Germana Falcone, Fabio Martelli
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms21030792
Identification and Characterization of circRNAs Responsive to Methyl Jasmonate in Arabidopsis thalianaCited by: 18
Author(s): Jingjing Zhang, Ruiqi Liu, Yanfeng Zhu, Jiaxin Gong, Shuwei Yin, Peisen Sun, Hao Feng, Qi Wang, Shuaijing Zhao, Zhongyuan Wang, Guanglin Li
Software Mentions: 1
Published: almost 5 years ago
10.18632/oncotarget.19930
Regulation of microRNAs function by circular RNAs in human cancerCited by: 43
Author(s): Chao Han, Nicole A. Seebacher, Francis J. Hornicek, Quancheng Kan, Zhenfeng Duan
Software Mentions: 1
Published: over 7 years ago