Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12870-019-2087-1

https://doi.org/10.1186/s12870-019-2087-1

Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

Cited by: 34
Author(s): Xing-Zheng Fu, Xiaoyong Zhang, Jie-Ya Qiu, Xue Zhou, Meng Yuan, Yuan He, Chun ChangPin, Li Cao, Lili Li, Peng LiangZhi
Published: about 5 years ago

Software Mentions 4

bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Papers that mentioned: 697
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
Papers that mentioned: 99
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299