Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02497-7

https://doi.org/10.1186/s13059-021-02497-7

SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs

Cited by: 7
Author(s): Alon Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Inés Lucía Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel, Sebastián Kadener
Published: about 3 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: circ
A basic CLI to make mosaic vrts using ctx imagery
Papers that mentioned: 69
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
Papers that mentioned: 99
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197
pypi: find
find files and dirs
Papers that mentioned: 54