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10.1371/journal.pcbi.1006158

Comment on "A comprehensive overview and evaluation of circular RNA detection tools"
Cited by: 14
Author(s): Chia-Ying Chen, Trees‐Juen Chuang
Software Mentions: 7
Published: over 5 years ago

Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer
Cited by: 31
Author(s): Fayez Kheir, Mengmeng Zhao, Michael J. Strong, Yi Yu, Asuka Nanbo, Erik K. Flemington, Gilbert F. Morris, Krzysztof Reiss, Li Li, Zhen Lin
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pcbi.1005420

A comprehensive overview and evaluation of circular RNA detection tools
Cited by: 285
Author(s): Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-018-0507-3

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
Cited by: 64
Author(s): Marcos Parras-Moltó, Ana Rodríguez-Galet, Patricia Suárez-Rodríguez, Alberto López-Bueno
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-018-4670-5

Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects
Cited by: 28
Author(s): Shobana Sekar, Lori Cuyugan, Jonathan Adkins, Philipp Geiger, Winnie S. Liang
Software Mentions: 6
Published: over 6 years ago

10.1186/s13059-021-02497-7

SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs
Cited by: 7
Author(s): Alon Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Inés Lucía Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel, Sebastián Kadener
Software Mentions: 5
Published: about 3 years ago

10.3389/fgene.2019.01347

Emerging Roles of Heat-Induced circRNAs Related to Lactogenesis in Lactating Sows
Cited by: 11
Author(s): Jiajie Sun, Haojie Zhang, Bao-Yu Hu, Yueqin Xie, Dongyang Wang, Jinzhi Zhang, Ting Chen, Junyi Luo, Songbo Wang, Qinyan Jiang, Qianyun Xi, Zujing Chen, Yongliang Zhang
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2020.591806

Genome-Wide Identification of Circular RNAs in Response to Low-Temperature Stress in Tomato Leaves
Cited by: 11
Author(s): Xuedong Yang, Yahui Liu, Hui Zhang, Jinyu Wang, Gaurav Zinta, Shangbo Xie, Weimin Zhu, Wen-Feng Nie
Software Mentions: 5
Published: about 4 years ago

10.1093/jmcb/mjz094

A combined computational pipeline to detect circular RNAs in human cancer cells under hypoxic stress
Cited by: 20
Author(s): Antonella Di Liddo, Camila de Oliveira Freitas Machado, Sandra E. Fischer, Stefanie Ebersberger, Andreas W. Heumüller, Julia E. Weigand, Michaela Müller-McNicoll, Kathi Zarnack
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.663091

Identification of a Potentially Functional circRNA-miRNA-mRNA Regulatory Network in Melanocytes for Investigating Pathogenesis of Vitiligo
Cited by: 4
Author(s): Lili Li, Zhi Xie, Xiliang Qian, Tai Wang, Minmin Jiang, Jinglin Qin, Chen Wang, Rongqun Wu, Canling Song
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0080156

PD5: A General Purpose Library for Primer Design Software
Cited by: 6
Author(s): Michael C. Riley, Wayne Aubrey, Michael Young, Amanda Clare
Software Mentions: 5
Published: almost 11 years ago

10.3390/cells9091937

Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs
Cited by: 7
Author(s): Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Jan Podkowiński, Luiza Handschuh, Paulina Jackowiak, Marek Figlerowicz
Software Mentions: 5
Published: about 4 years ago

10.1080/22221751.2020.1738277

Competing endogenous RNA network profiling reveals novel host dependency factors required for MERS-CoV propagation
Cited by: 50
Author(s): Xi Zhang, Hin Chu, Lei Wen, Huiping Shuai, Dong Yang, Yixin Wang, Yuxin Hou, Zheng Zhu, Shuofeng Yuan, Feifei Yin, Jasper Fuk‐Woo Chan, Kwok‐Yung Yuen
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-018-4926-0

CircMarker: a fast and accurate algorithm for circular RNA detection
Cited by: 23
Author(s): Xin Li, Chong Chu, Jingwen Pei, Ion Măndoiu, Yufeng Wu
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-019-5960-2

Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT
Cited by: 19
Author(s): Matteo Schiavinato, Richard Strasser, Lukas Mach, Juliane C. Dohm, Heinz Himmelbauer
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2020.602731

CircRNA hsa_circ_0008500 Acts as a miR-1301-3p Sponge to Promote Osteoblast Mineralization by Upregulating PADI4
Cited by: 11
Author(s): Qiaoli Zhai, Yi Zhao, Linping Wang, Yan Dai, Peiqing Zhao, Xinxin Xiang, Kui Liu, Wei Du, Wenxiu Tian, Baoye Yang, Tao Li, Lianqing Wang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2021.627907

Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe Epilepsy
Cited by: 13
Author(s): Andreia Gomes‐Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2019.00603

Genome-Wide Identification of Circular RNAs Revealed the Dominant Intergenic Region Circularization Model in Apostichopus japonicus
Cited by: 15
Author(s): Xuelin Zhao, Xuemei Duan, Jianping Fu, Yina Shao, Weiwei Zhang, Ming Guo, Chenghua Li
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.15370

Genome‐Wide Analysis of circular RNAs and validation of hsa_circ_0006719 as a potential novel diagnostic biomarker in congenital scoliosis patients
Cited by: 1
Author(s): Gang Liu, Jianxiong Shen, Chong Chen, Yang Jiao, Zheng Li, Haining Tan, Youxi Lin, Tianhua Rong
Software Mentions: 4
Published: over 4 years ago

10.1111/jcmm.16324

Identification of novel dysregulated circular RNAs in early‐stage breast cancer
Cited by: 17
Author(s): Arunagiri Kuha Deva Magendhra Rao, Vittal Rangan Arvinden, Deepa P. Ramasamy, Krishna Patel, Balaiah Meenakumari, Priya Ramanathan, Shirley Sundersingh, Velusami Sridevi, Thangarajan Rajkumar, Zdenko Herceg, Harsha Gowda, Samson Mani
Software Mentions: 4
Published: over 3 years ago

10.3389/fnmol.2017.00091

Identification of the Spinal Expression Profile of Non-coding RNAs Involved in Neuropathic Pain Following Spared Nerve Injury by Sequence Analysis
Cited by: 114
Author(s): Jun Zhou, Qingming Xiong, Hongtao Chen, Cheng-xiang Yang, Yu Fan
Software Mentions: 4
Published: over 7 years ago

10.1038/srep38820

Acfs: accurate circRNA identification and quantification from RNA-Seq data
Cited by: 67
Author(s): Xintian You, Tim Conrad
Software Mentions: 4
Published: almost 8 years ago

10.18632/oncotarget.22130

Systematic analysis of the expression profile of non-coding RNAs involved in ischemia/reperfusion-induced acute kidney injury in mice using RNA sequencing
Cited by: 25
Author(s): Jun Zhou, Hongtao Chen, Yu Fan
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-020-6649-2

Trend analysis of the role of circular RNA in goat skeletal muscle development
Cited by: 17
Author(s): Yinghui Ling, Qi Zheng, Lu Zhu, Lei Xu, Menghua Sui, Yunhai Zhang, Ya Liu, Fugui Fang, Mingxing Chu, Yuehui Ma, Xiaorong Zhang
Software Mentions: 3
Published: over 4 years ago

10.3390/ani11092557

Identification of Circular RNAs in the Anterior Pituitary in Rats Treated with GnRH
Cited by: 3
Author(s): Haixiang Guo, Bao Yuan, Meng-Ting Su, Yi Zheng, Jinyu Zhang, Dong-Xu Han, Hao-Qi Wang, Yongping Huang, Hao Jiang, Jiabao Zhang
Software Mentions: 3
Published: about 3 years ago

10.1186/s12864-021-07706-y

Morphological changes and functional circRNAs screening of rabbit skeletal muscle development
Cited by: 4
Author(s): Qi Zheng, Cuiyun Zhu, Jing Jing, Yinghui Ling, Shuaiqi Qin, Jiao Wang, Lisha Zha, Ya Liu, Fugui Fang
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.102576

Circular RNA SMO sponges miR-338-3p to promote the growth of glioma by enhancing the expression of SMO
Cited by: 22
Author(s): Xiong Zhang, Chaoyang Zhou, Luyang Wang, Ronglan Zhu, Liangchen Zhong, Dengfeng Wan, Qiangping Wang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12911-020-1117-0

A machine learning framework for accurately recognizing circular RNAs for clinical decision-supporting
Cited by: 1
Author(s): Yidan Wang, Xuanping Zhang, Tao Wang, Jinchun Xing, Zhun Wu, Wei Li, Jiayin Wang
Software Mentions: 3
Published: over 4 years ago

10.26508/lsa.201900398

Noncoding AUG circRNAs constitute an abundant and conserved subclass of circles
Cited by: 59
Author(s): Lotte Vw Stagsted, Katrine Mandrup Nielsen, Iben Daugaard, Thomas B. Hansen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0202375

Genome-wide identification and functional analysis of circRNAs in Zea mays
Cited by: 28
Author(s): Baihua Tang, Zhiqiang Hao, Yanfeng Zhu, Hua Zhang, Guanglin Li
Software Mentions: 3
Published: almost 6 years ago

10.1002/2211-5463.12512

Circular <scp>RNA</scp> expression profile of spleen in a <i>Clostridium perfringens</i> type C‐induced piglet model of necrotizing enteritis
Cited by: 13
Author(s): Zunqiang Yan, Tiantuan Jiang, Pengfei Wang, Xiaoyu Huang, Qiaoli Yang, Weibo Sun, Shuangbao Gun
Software Mentions: 3
Published: about 6 years ago

10.3389/fcell.2020.00273

Non-coding RNAs in Nervous System Development and Disease
Cited by: 34
Author(s): Beatrice Salvatori, Silvia Biscarini, Mariangela Morlando
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2019.00731

Identification of Potential Immune-Related circRNA–miRNA–mRNA Regulatory Network in Intestine of Paralichthys olivaceus During Edwardsiella tarda Infection
Cited by: 36
Author(s): Yunji Xiu, Guangpeng Jiang, Shun Zhou, Jing Diao, Hongjun Liu, Baofeng Su, Chao Li
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.00431

Analyses of a Panel of Transcripts Identified From a Small Sample Size and Construction of RNA Networks in Hepatocellular Carcinoma
Cited by: 13
Author(s): Sheng Zhang, Xiaolin Wang, Ge‐Liang Xu, Shengfang Ge, Chen Liang
Software Mentions: 3
Published: over 5 years ago

10.3389/fnmol.2021.665788

CircRNA-ceRNA Network Revealing the Potential Regulatory Roles of CircRNA in Alzheimer’s Disease Involved the cGMP-PKG Signal Pathway
Cited by: 20
Author(s): Yuan Zhang, Lili Qian, Yingying Liu, Ying Liu, Wanpeng Yu, Yanfang Zhao
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12010084

Identification of Circular RNAs in Hypothalamus of Gilts during the Onset of Puberty
Cited by: 5
Author(s): Qingnan Li, Xiangchun Pan, Nian Li, Wentao Gong, Yaosheng Chen, Xiaolong Yuan
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13059-014-0571-3

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
Cited by: 780
Author(s): Yuan Gao, Jinfeng Wang, Fangqing Zhao
Software Mentions: 3
Published: almost 10 years ago

10.1186/s13059-015-0801-3

Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development
Cited by: 382
Author(s): Morten T. Venø, Thomas B. Hansen, Susanne T. Venø, Bettina Hjelm Clausen, Manuela Grebing, Bente Finsen, Ida E. Holm, Jørgen Kjems
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1007206

The Epstein Barr virus circRNAome
Cited by: 105
Author(s): Nathan Ungerleider, Monica Concha, Zhen Lin, Claire Roberts, Xia Wang, Subing Cao, Melody Baddoo, William C. Moss, Yi Yu, Michael Seddon, Terri Lehman, Scott A. Tibbetts, Rolf Renne, Yan Dong, Erik K. Flemington
Software Mentions: 3
Published: over 6 years ago

10.1186/s12931-018-0962-1

Circular RNAs: a rising star in respiratory diseases
Cited by: 60
Author(s): Jian Wang, Mengchan Zhu, Jue Pan, Cuicui Chen, Shijin Xia, Yuanlin Song
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12284-021-00455-2

Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development
Cited by: 21
Author(s): Run Zhou, Pablo Sanz-Jimenez, Xitong Zhu, Jia-Wu Feng, Lin Shen, Jia‐Ming Song, Lingling Chen
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-93781-w

Identification and characterization of a novel Epstein-Barr Virus-encoded circular RNA from LMP-2 Gene
Cited by: 9
Author(s): Ke-En Tan, Wei Lun Ng, Georgi K. Marinov, Ken Hung-On Yu, Lu Tan, Ee Shan Liau, Sook Yan Goh, Kok Siong Yeo, Kevin Y. Yip, Kwok‐Wai Lo, Alan Soo‐Beng Khoo, Lee Fah Yap, Chee-Kwee Ea, Yat-Yuen Lim
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.58478

circZNF827 nucleates a transcription inhibitory complex to balance neuronal differentiation
Cited by: 26
Author(s): Anne Kruse Hollensen, Henriette Sylvain Thomsen, Marta Lloret-Llinares, Andreas Bjerregaard Kamstrup, James C. Jensen, Majbritt Luckmann, Nanna Birkmose, Johan Palmfeldt, Torben Heick Jensen, Thomas B. Hansen, Christian Kroun Damgaard
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22105182

Canonical and Interior Circular RNAs Function as Competing Endogenous RNAs in Psoriatic Skin
Cited by: 8
Author(s): Xiaoxin Liu, Jacqueline Frost, Anne M. Bowcock, Weixiong Zhang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-07645-8

Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle
Cited by: 18
Author(s): Meng Li, Na Zhang, Wanfeng Zhang, Wei Hei, Chunbo Cai, Yang Yang, Chang Lu, Pengfei Gao, Xiaohong Guo, Guoqing Cao, Bugao Li
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.623584

Comprehensive circRNA Expression Profile and Construction of circRNAs-Related ceRNA Network in a Mouse Model of Autism
Cited by: 6
Author(s): Ji Wang, Zhijun Yang, Canming Chen, Xu Yang, Hongguang Wang, Bing Liu, Wei Zhang, Yanan Jiang
Software Mentions: 2
Published: over 3 years ago

10.3390/genes12010100

Systematic Identification and Analysis of Circular RNAs of Japanese Flounder (Paralichthys olivaceus) in Response to Vibrio anguillarum Infection
Cited by: 5
Author(s): Xianhui Ning, Li Sun
Software Mentions: 2
Published: almost 4 years ago

10.3389/fvets.2021.615405

Genome-Wide Differential Expression Profiling of Pulmonary circRNAs Associated With Immune Reaction to Pasteurella multocida in Goats
Cited by: 6
Author(s): Qiaoling Chen, Zhenxing Zhang, Si Chen, Jie Chen, Yiwen Cheng, Ang Liu, Bin Li, Zhe Chen, Yiying Zheng, Manchuriga Ga, Lijun Du, Yafei Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12967-021-03075-y

Development of a two-circular RNA panel as potential prognostic biomarker for gastric cancer
Cited by: 5
Author(s): Jing Liu, Xiaolei Zhu, Meinan Yan, Hui Li
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-020-66990-y

Expression profile and bioinformatics analysis of circular RNAs in acute ischemic stroke in a South Chinese Han population
Cited by: 30
Author(s): Sheng‐Hua Li, Lan Chen, Chen Xu, Xiang Qiu, Zhenxiu Qin, Jinggui Gao, LI Jin-pin, Jingli Liu
Software Mentions: 2
Published: over 4 years ago

10.3390/genes10060421

Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors
Cited by: 9
Author(s): Melissa Tumen-Velasquez, Nicole S. Laniohan, Cory Momany, Ellen L. Neidle
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2021.692501

Identification of Differentially Expressed Non-coding RNA Networks With Potential Immunoregulatory Roles During Salmonella Enteritidis Infection in Ducks
Cited by: 5
Author(s): Yu Zhang, Xiaoqian Dong, Li-e Hou, Zhen Cao, Guoqiang Zhu, Wanwipa Vongsangnak, Qi Xu, Guohong Chen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-43030-y

Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B
Cited by: 25
Author(s): Kelly L. Warfield, Kaitlyn Schaaf, Lisa Evans DeWald, Kevin B. Spurgers, Wei Wang, Eric Stavale, Michelle Mendenhall, Meghan H. Shilts, Timothy B. Stockwell, Dale L. Barnard, Urban Ramstedt, Suman Das
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201800148

Ribosomal stalling landscapes revealed by high-throughput inverse toeprinting of mRNA libraries
Cited by: 10
Author(s): Britta Seip, Guénaël Sacheau, Denis Dupuy, C.A. Innis
Software Mentions: 1
Published: about 6 years ago

Projects: pypi: find

Papers Mentioning find 54