Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-78469-x

https://doi.org/10.1038/s41598-020-78469-x

Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions

Cited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Published: almost 4 years ago

Software Mentions 23

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36
cran: heatmaply
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Papers that mentioned: 45
cran: htmltools
Tools for HTML
Papers that mentioned: 2
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
cran: Pareto
The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Papers that mentioned: 4
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: shinyBS
Twitter Bootstrap Components for Shiny
Papers that mentioned: 15
cran: shinycssloaders
Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14
cran: shinydashboard
Create Dashboards with 'Shiny'
Papers that mentioned: 22
cran: shinyjs
Easily Improve the User Experience of Your Shiny Apps in Seconds
Papers that mentioned: 15
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: visNetwork
Network Visualization using 'vis.js' Library
Papers that mentioned: 49
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
Papers that mentioned: 99
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: fastcluster
Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: script
Help for writing shell scripts in Python
Papers that mentioned: 575