Papers: 10.1038/s41598-020-78469-x

https://doi.org/10.1038/s41598-020-78469-x

Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions

Cited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Published: almost 6 years ago

Software Mentions 23

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
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cran: circlize
Circular Visualization
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cran: dendextend
Extending 'dendrogram' Functionality in R
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cran: DT
A Wrapper of the JavaScript Library 'DataTables'
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Very Likely Science (95)
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
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cran: heatmaply
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
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cran: htmltools
Tools for HTML
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cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
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cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
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cran: Pareto
The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Papers that mentioned: 4
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cran: plotrix
Various Plotting Functions
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cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
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cran: shinyBS
Twitter Bootstrap Components for Shiny
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cran: shinycssloaders
Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14
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cran: shinydashboard
Create Dashboards with 'Shiny'
Papers that mentioned: 22
Very Likely Science (83)
cran: shinyjs
Easily Improve the User Experience of Your Shiny Apps in Seconds
Papers that mentioned: 15
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cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
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cran: visNetwork
Network Visualization using 'vis.js' Library
Papers that mentioned: 49
Very Likely Science (100)
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)
Papers that mentioned: 99
Very Likely Science (100)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
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pypi: fastcluster
Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36
Very Likely Science (80)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
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pypi: script
Help for writing shell scripts in Python
Papers that mentioned: 575
Very Likely Science (65)