Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: shinydashboard

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/shinydashboard

Create Dashboards with 'Shiny'
10 versions
Latest release: about 3 years ago
162 dependent packages
46,717 downloads last month

Papers Mentioning shinydashboard 22

10.1038/s41598-020-78469-x

Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions
Cited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Software Mentions: 23
Published: almost 4 years ago

10.1186/s13104-019-4179-2

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data
Cited by: 75
Author(s): Wei Su, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Software Mentions: 20
Published: over 5 years ago

10.1186/s12859-019-2879-1

pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
Cited by: 146
Author(s): Fédérico Marini, Harald Binder
Software Mentions: 18
Published: over 5 years ago

10.1016/j.scitotenv.2020.140792

ESPRES: A web application for interactive analysis of multiple pressures in aquatic ecosystems
Cited by: 4
Author(s): Ángel Údias, Alberto Pistocchi, Olga Vigiak, Bruna Grizzetti, F. Bouraoui, César Alfaro
Software Mentions: 18
Published: about 4 years ago

10.1186/s12859-020-03819-5

ideal: an R/Bioconductor package for interactive differential expression analysis
Cited by: 18
Author(s): Fédérico Marini, Jan Linke, Harald Binder
Software Mentions: 17
Published: almost 4 years ago

10.1186/s12859-020-03577-4

NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization
Cited by: 38
Author(s): Ayman Yousif, Nizar Drou, Jillian Rowe, Mohammed Khalfan, Kristin C. Gunsalus
Software Mentions: 17
Published: over 4 years ago

10.3389/fgene.2021.719204

RetroScan: An Easy-to-Use Pipeline for Retrocopy Annotation and Visualization
Cited by: 2
Author(s): Zhaoyuan Wei, Jiahe Sun, Qinhui Li, Ting Yao, Haiyue Zeng, Yi Wang
Software Mentions: 16
Published: over 3 years ago

10.1186/s12874-020-01121-9

COVID19-world: a shiny application to perform comprehensive country-specific data visualization for SARS-CoV-2 epidemic
Cited by: 19
Author(s): Cristian Tebé, Joan Valls, Pau Satorra, Aurelio Tobías
Software Mentions: 13
Published: about 4 years ago

10.1002/ece3.7130

QuoVidi: An open‐source web application for the organization of large‐scale biological treasure hunts
Cited by: 8
Author(s): Guillaume Lobet, Charlotte Descamps, Lola Leveau, Alain Guillet, Jean-François Rees
Software Mentions: 12
Published: almost 4 years ago

10.3389/fmed.2020.00247

Growth Rate and Acceleration Analysis of the COVID-19 Pandemic Reveals the Effect of Public Health Measures in Real Time
Cited by: 34
Author(s): Yuri Tani Utsunomiya, Adam Taiti Harth Utsunomiya, Rafaela Beatriz Pintor Torrecilha, Silvana de Cássia Paulan, Marco Milanesi, José Fernando Garcia
Software Mentions: 10
Published: over 4 years ago

10.1080/19336896.2020.1751574

Estimation of amyloid aggregate sizes with semi-denaturing detergent agarose gel electrophoresis and its limitations
Cited by: 10
Author(s): Polina Drozdova, Yury A. Barbitoff, М. В. Белоусов, Rostislav K. Skitchenko, Tatyana Rogoza, Jeremy Y Leclercq, Andrey V. Kajava, Andrew G. Matveenko, Galina A. Zhouravleva, Stanislav A. Bondarev
Software Mentions: 10
Published: almost 5 years ago

10.1093/gbe/evab028

sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R
Cited by: 14
Author(s): Kuan-Hao Chao, Kirston Barton, Sarah Palmer, Robert Lanfear
Software Mentions: 10
Published: almost 4 years ago

10.1186/s12916-020-01826-0

Development and validation of a lifestyle-based model for colorectal cancer risk prediction: the LiFeCRC score
Cited by: 33
Author(s): Krasimira Aleksandrova, Robin Reichmann, Rudolf Kaaks, Mazda Jenab, H. Bas Bueno-de-Mesquita, Christina C. Dahm, Anne Kirstine Eriksen, Anne Tjønneland, Fanny Artaud, Marie Christine Boutron-Ruault, Gianluca Severi, Anika Hüsing, Antonia Trichopoulou, Anna Karakatsani, Eleni Peppa, Salvatore Panico, Giovanna Masala, Sara Grioni, Carlotta Sacerdote, Rosario Tumino, Sjoerd G. Elias, Anne M. May, Kristin Benjaminsen Borch, Torkjel M. Sandanger, Guri Skeie, María José Sánchez, José María Huerta, Núria Sala, Aurelio Barricarte Gurrea, J. Ramón Quiŕos, Pilar Amiano, Jonna Berntsson, Isabel Drake, Bethany Van Guelpen, Sophia Harlid, Tim Key, Elisabete Weiderpass, Elom K. Aglago, Amanda J. Cross, Konstantinos K. Tsilidis, Elio Riboli, Marc J. Gunter
Software Mentions: 9
Published: almost 4 years ago

10.3897/CompCytogen.11(2).11395

The Cerrado (Brazil) plant cytogenetics database
Cited by: 6
Author(s): Fernando Roa, Mariana Pires de Campos Telles
Software Mentions: 7
Published: over 7 years ago

10.1186/s12859-021-04012-y

CeNet Omnibus: an R/Shiny application to the construction and analysis of competing endogenous RNA network
Cited by: 4
Author(s): Wen Xiao, Lin Gao, Tuo Song, Chaoqun Jiang
Software Mentions: 7
Published: almost 4 years ago

10.3390/ijms21134727

Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies
Cited by: 16
Author(s): Maximilian Fuchs, Fabian Philipp Kreutzer, Lorenz A. Kapsner, Saskia Mitzka, Annette Just, Filippo Perbellini, Cesare M. Terracciano, Xiaoyan Ke, Robert Geffers, Christian Bogdan, Hans‐Ulrich Prokosch, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0177840

Identifying artemisinin resistance from parasite clearance half-life data with a simple Shiny web application
Cited by: 3
Author(s): Tun Stt., Yoel Lubell, Arjen M. Dondorp, Tom Fieldman, Kyaw Myo Tun, O. Celhay, Xin Hui S Chan, Sompob Saralamba, Lisa J. White
Software Mentions: 6
Published: over 7 years ago

10.5334/jors.166

Web Tool for Navigating and Plotting SomaLogic ADAT Files
Cited by: 19
Author(s): Foo Cheung, Giovanna Fantoni, Maria Conner, Brian Sellers, Yuri Kotliarov, Julián Candia, Katherine E. Stagliano, Angélique Biancotto
Software Mentions: 6
Published: about 7 years ago

10.1093/database/bax080

Edaphostat: interactive ecological analysis of soil organism occurrences and preferences from the Edaphobase data warehouse
Cited by: 0
Author(s): Jonas Hausen, Björn Scholz-Starke, Ulrich Burkhardt, Stephan Lesch, Sebastian Rick, David J. Russell, Martina Roß-Nickoll, Andreas Schäffer
Software Mentions: 5
Published: almost 8 years ago

10.3389/fvets.2020.558409

Socially vs. Privately Optimal Control of Livestock Diseases: A Case for Integration of Epidemiology and Economics
Cited by: 5
Author(s): Ângelo Mendes, Daniel T. Haydon, Emma McIntosh, Nick Hanley, Jo E.B. Halliday
Software Mentions: 5
Published: almost 4 years ago

10.5334/jors.243

A Figure One Web Tool for Visualization of Experimental Designs
Cited by: 1
Author(s): Foo Cheung
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.9277

WHONDRS-GUI: a web application for global survey of surface water metabolites
Cited by: 0
Author(s): Xinming Lin, Huiying Ren, Amy Goldman, James C. Stegen, T. D. Scheibe
Software Mentions: 2
Published: over 4 years ago